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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003797 ID=TCONS_00003797|Name=TCONS_00003797|organism=Clytia hemisphaerica|type=transcript|length=2712bpRun BLAST on NCBI protein sequence of TCONS_00003797-protein >TCONS_00003797-protein ID=TCONS_00003797-protein|Name=TCONS_00003797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=610bp MYGSYIMDKGGQTKRQKISSEMDTKTEAHADSIDVQSPLMGQKVESEKSGRun BLAST on NCBI transcript from alignment at sc0000031:279573..328220- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003797 ID=TCONS_00003797|Name=TCONS_00003797|organism=Clytia hemisphaerica|type=transcript|length=48648bp|location=Sequence derived from alignment at sc0000031:279573..328220- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000031:279573..328220- >TCONS_00003797 ID=TCONS_00003797|Name=TCONS_00003797|organism=Clytia hemisphaerica|type=CDS|length=27495bp|location=Sequence derived from alignment at sc0000031:279573..328220- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003797 vs. Swiss-Prot (Human)
Match: S23A2 (Solute carrier family 23 member 2 OS=Homo sapiens GN=SLC23A2 PE=1 SV=1) HSP 1 Score: 491.5 bits (1264), Expect = 1.341e-161 Identity = 277/583 (47.51%), Postives = 377/583 (64.67%), Query Frame = 1
Query: 325 MGQKVESEKSGAKQSKDELLYRIDKDPSWPLAMLLGFQHYLTMFGATVGLPFALAGALCLGNNSTIVGELISTLFFCSGLVTLLQSTFGVRLPIVQGGTYTFLAPTFAIMGARTTSCFXXXXXXXXXXXXXSIPDPEEWKSRITEIQGAIMVSSLFQIVIGFSGIMGFVLRYIGPLTICPTIALVGLPLFGVAGNFAGTSWGVTFVTMFCITLFSQVLKEVRLPNPF--------GDPIPVFKLFPVLLAIIVSWALSAILTAAGIAESDK------ARTDYRIDVLRESDWFRVPYPGQWGTPTVNVAAVFGMLAGVLASMLESIGDYYACAKLSGAPPPPKHALNRGLGFEGLGCLITGAWGTGNGTTSYSENISAIGITRVGSLRVIRCGAMIMIVLSIIGKFGALFATVPDPVXXXXXXXXXXXXTAVGLSSLQYVDLSSMRNLFVLGTSLFFGMVIPAWIGENGKSIDTGSSAVDQIIKVLLSTNMFVGGVTGFFLDNLLPGTKEERGIIKWKRSFDGDGNSTGTTASIHVYDPPF-IGSLFKHRVCKYIPFLPYYG-------NKSDVTMDNIEDAK 2007
+ + ++S S Q D ++Y I+ P W L + LG QHYLT F T+ +PF LA A+C+G + +LI T+FFC G+ TLLQ+TFG RLP+ Q + FLAP AI+ C T V+ + W RI EIQGAI++SSL ++VIG G+ G +L+YIGPLTI PT+AL+GL F AG AG WG+ +T+F + LFSQ + V+ P P + +FK+FP++LAI+VSW L I T + D ARTD R VL + WF+VPYP QWG PTV+ A V GML+ V+AS++ESIGDYYACA+LS APPPP HA+NRG+ EGL C++ G +GTGNG+TS S NI +GIT+VGS RVI+CGA +M+ L +IGKF ALFA++PDPV+G +F +FGMITAVGLS+LQ++DL+S RNLFVLG S+FFG+V+P+++ +N + TG + +DQ++ VLL+T MFVGG F LDN +PGT EERGI KWK+ G G + + Y+ PF + + K+R Y+P P + KSD + + ED++
Sbjct: 72 LAETLDSTGSLDPQRSD-MIYTIEDVPPWYLCIFLGLQHYLTCFSGTIAVPFLLADAMCVGYDQWATSQLIGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILSLDKWKC-NTTDVSVANGTAELLHTEHIWYPRIREIQGAIIMSSLIEVVIGLLGLPGALLKYIGPLTITPTVALIGLSGFQAAGERAGKHWGIAMLTIFLVLLFSQYARNVKFPLPIYKSKKGWTAYKLQLFKMFPIILAILVSWLLCFIFTVTDVFPPDSTKYGFYARTDARQGVLLVAPWFKVPYPFQWGLPTVSAAGVIGMLSAVVASIIESIGDYYACARLSCAPPPPIHAINRGIFVEGLSCVLDGIFGTGNGSTSSSPNIGVLGITKVGSRRVIQCGAALMLALGMIGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQN--PLVTGITGIDQVLNVLLTTAMFVGGCVAFILDNTIPGTPEERGIRKWKK---GVGKGNKSLDGMESYNLPFGMNIIKKYRCFSYLPISPTFVGYTWKGLRKSDNSRSSDEDSQ 647 The following BLAST results are available for this feature:
BLAST of TCONS_00003797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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