TCONS_00003795 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003795
Unique NameTCONS_00003795
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1954

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003795 ID=TCONS_00003795|Name=TCONS_00003795|organism=Clytia hemisphaerica|type=transcript|length=1954bp
GGGTAACatataataaataatataaaatatagaaaaatggATTTGATAAC
TCTGGTACAAGGATGTGCAATGGTCTTCACTTTTGGATTCTTCTTTTCGG
GAAGCGCAGCTGTATTGAAAGTCCACCAACAAAAATCtgttaaaaatgtc
aattttttgccaTATCTTGCTGCTACTCTGAATTGTTGTTTATGGACGAT
CTATGGTCATTTGAAGGGCGATTGGTTATTGATATTGGTCAACGCAGTGG
GATGTATATTGCAAGCGATttacattttcatcttcatgcAGAATTGTGAT
AATAAGCCATACTATCTCAAGAAGGTGTTTGTTTTACTGACAACATGTTT
GGGTGCATTATCATTCGCTTACCTGGGTACAGATCTCTTCGATGTCGTGC
GGTCGCTTGGTTTGTTCGCTAGCACTGTTACCGTTCTTATGTTCGGCTCA
CCATTATCTGTTCTAcgtGTTGTCATAGCAACGAAGAGTTCCgaacaaat
ttcttttcctttaTCTCTAATGACCGTTTGTAATTGTTTTTCCTGGCTTG
TGTATGGTTATCTTATCAAAGACAGCTATGTACAGGTACCCAATTTCTTT
GGGCTTGTTCTAGGTATTATCCAAGTCCTAACGATATACCAATATCCAAA
CAAAACAAGCCGTGTGGGTTTAACGTCTCAAGTGTAATACAATCAATTTT
TTCTTGGCCctattaaattgaaaaaattatctTGATTTTTACAAGAAGGT
TATTGAGTAACTGACGCGTTCTGTGAGGCTAACATCTCTTGGCTTTAGCA
AGGTCAACCTCctgtaaaatgaaatattgagtAATAATTATGTAATATGT
TCTGGTTGATCTTAATCACATAACGTTTGTCATTGGATTGCATCACCCAC
TTTTACATGTACAATGTGATCACCAAATGCATGTTTCTTGGATAATGCTT
CTTGTCCATGCTTTTGGATAATCTACATTTGTCTATGCGAACCAAAGCGT
TTGTTGACTTGACTGGATATCTATGTGAATTTTGCGGCGGGTgtgattgg
gcttttccagaaaaaaaaccgtataccccctgttgaggagggcCCTTCCT
CTGTggctggaattctgaattttagtaggatttaaaaagctaccccatgg
aattccagttatttttgacagatttttgtatctcaatatggaattccgcc
acatatcaaaccttaccccctttgGAACGGAAATGAACTCCTCAACAttg
ggtatacggtttttttctgaaaaagcccattttcaattgttttcacaATG
AACATTATATATATTGTTGTATCATTTTCGCTTCTCGATATTTTAGATGT
TTCTATATATTGTGATTTTTAGTTCATGATGACTTTGCATGCGGTAGTTC
ATTTTTAACTTAGGGTGACAATAATACAAATTTAGAGAATTATTTTTGAT
GTGCATTTTCCTATTTATGACTACGAACAAAACTGGTAAGATAATATAAG
GTTTTTACAAAAAACTTGATCCTAATGCTTGCTATTAGATATTTTCCTTA
GACAAGCCatattctaaaaaggtaggGTAGCGTCCGTTTTAGACCAAAAA
GGGCACTTCCTACTGTTTCTCCACAGAAAATCATAATTTGTTACAAAGAA
GGGCAGGGTCTGACGCCTAAAAGGCATGAAGAATGGTCTGTTAGATTTTG
TATGCAGTGTTTTCTGCAGTGGAGAGTTTTTTATTAGGTTTGATCCTGAC
TGGCCGAGAACGACTGTAAATCATAACTTTCTACACTTTAGCGGTCTTTA
GAGGTTACTCTTCGAGAGTGAAAATATCACTGTAATCAAGATTTCAAATT
CTAGTGCTCTAACAGTCGAGTgtatgttttttatataagaacaagctata
taaaAATACGAGGCAAAAATgtcaagaacaaattaagagcattttaagtc
TTTG
Run BLAST on NCBI

protein sequence of TCONS_00003795-protein

>TCONS_00003795-protein ID=TCONS_00003795-protein|Name=TCONS_00003795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MDLITLVQGCAMVFTFGFFFSGSAAVLKVHQQKSVKNVNFLPYLAATLNC
CLWTIYGHLKGDWLLILVNAVGCILQAIYIFIFMQNCDNKPYYLKKVFVL
LTTCLGALSFAYLGTDLFDVVRSLGLFASTVTVLMFGSPLSVLRVVIATK
SSEQISFPLSLMTVCNCFSWLVYGYLIKDSYVQVPNFFGLVLGIIQVLTI
YQYPNKTSRVGLTSQV
Run BLAST on NCBI

transcript from alignment at sc0000031:269768..278697-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003795 ID=TCONS_00003795|Name=TCONS_00003795|organism=Clytia hemisphaerica|type=transcript|length=8930bp|location=Sequence derived from alignment at sc0000031:269768..278697- (Clytia hemisphaerica)
GGGTAACATATAATAAATAATATAAAATATAGAAAAATGGATTTGATAAC
TCTGGTACAAGGATGTGCAATGGTCTTCACTTTTGGATTCTTCTTTTCGG
GAAGGTATACATATTTTAAATTTTTCTGATTTTTATGATTTTCATAAGAC
AGTTGACGCTCTCTTATTGGACGTTCTACTATTCGATAAGCTCCTTTATT
CGAGGAAATTTAAAGTCCCCGTCAACAGAAACTCTCCTAAACGACCTTCC
CTTATTCGATAAGCTCCCTTATTTGATGAAAATTCTTCTTGAAGATCGAA
TTAGAGAGCGTCAACTTTATTATGCATTACAGTAGAAATTTCGGTGAAAA
GAAAATTTTGCTGATTTGTAGTTTTTAGGTTCCTCCGTTTTTCTTGCGAC
ATCTGCCGAAAAATTCCGGCCAAATTTAATTTATTCGTTTCATTTCAGGT
AAAAAAATTTAAATTTAACTTTATTTTGCGTTTCAGATTCTTATGATTTC
ATGATATTTTTACACCGCTCATGGTTTTAAGAGTTAGTTTATAGGTCATA
TATTCAAAAAAGAAAATACCTATGGGAGACCTTTTATATTTATGTACCAG
AACCAACTTACAGTAGAAGGTCTGTTTTACGATTTTCAAAATCTGCGTAG
GGGAAACTTTTCCCATATAGCATATAAATATCTAGAGGGTCTTTCGCGGA
GTTTATTTTTCTCATTATAGTCAACAGCCTGGTTCCGGACATTTGTGCCC
GGACATTTGTGGCGCAGGCGATAAGCATTATAATCATATCACATTTTGAA
TTGTTTCTCGTTTATTTTCAGCGCAGCTGTATTGAAAGTCCACCAACAAA
AATCTGTTAAAAATGTCAATTTTTTGCCATATCTTGCTGCTACTCTGAAG
TGAGTTTTGGTATAATACTTTTTTTTTGTTTCTTGTCCCATTCTGTGTTT
CCCTCATAGATTTATAAAGCCCGAAGGGCTAGATGTCATGTTTTAAGCTC
TTCCATGCAAAAAAGGTGAATATCACAAAAAAAATATTGCTTTTGTTTTC
GAAAACCCGCGAAGTATCTTATTGGTCAAGCGCTGAAATTCTATTGTTAT
TATCACATGACCTAGGTAAGATTTCCTACCTAACCTTGGCACACTTTTCA
GCGAAAGCACGACATCTAACCCTTCGAGCTTTATATAAATCTATGGTTTC
CTTTGATTTGGCCGTCATCTAGTTCTTCACGAGAAACCTTTGCATATTTT
ACTACAGTAGACACTCTGTTTTTCGAAATCACATCTTCAGAATTCGAAAA
TCTCGTTTCCTACAATGGATCACGCTTAGCGAGTTTAGGTCTGCTGTTTT
TACTGTAACGGAGAAGGTTAGCTTTTGTTTTGTCTAGGTCAGAGGACAGA
GACGGCGGTAATTCAACACTTTAACCGTCCTTGATTTTGCAAGTCAAAAT
TTAGGGCTGTCCCAAATCGTAACCGTCTAAATGTTATGTTCGCTCCGTTG
TCTTAAAAAAGGGAGATACATAAGCCCGCTAATAATAAGCCCGCTAATAA
TAGGGAAAAGGAAGAAACATGTGATTCTTAGGGAACATCGAATAAATTGA
AATTTCAATTTTTATACAATAATTTATATACAATATACAGACAGATTATA
GATAGGTTTCAAGATGTCTTTCGATTTTTTTGTTTCTACTAGTTGTTGTT
TATGGACGATCTATGGTCATTTGAAGGGCGATTGGTTATTGATATTGGTC
AACGCAGTGGGATGTATATTGCAAGCGATTTACATTTTCATCTTCATGCA
GAATTGTGATAATAAGGTAAGGTATCTTTTGGGTCAGTCTGGGGGTTTTT
ATAAGACACAAATACTCTGAATTTTACAGAACAGCAAGAAAAGCATTTAC
TTACTCACCTCAAAATTTATTTAAACAAAACACTTTGGTTTGGCAAAAAT
AAGGAAGAACTACACAGGAAGAAATCTTTAGCCGACGTTGTAAAAACTCC
AGATCATCTGTATCTTTTGCTCAACGCTCAACTCTCTTGAATAATTTGAT
TTTCCAGGTACCACAAATTTTACTCCCTCTAAAACCATAACCCCTAAAAA
GAAACAAAACTGCTCAACTACGTGCGTCGCGTTACGTCAGGGTTCGAAAT
AACGGTCGGACATCGGACATTGTCCGACCCAAATAGCTTCATGTCCGACC
CAAAAATCATAATTTTCAAGCTGAAGCAACCCTGATCGGACATTTTATCC
GACCCACTTGAAATCGTTATCGTTATCGTTACGTTCACTAGCACGTTCAA
ATCACCATGATTCGTTTTGATAATGTATTGATTTCGCAAGGTCAACATTT
TCAACAGGCTTCGATTTAAATATCGTTGACCTGGCTTCAACCTAACTTTC
TCTCTGGGACCAAAAAAACCGTCCCAGTAAGGCAAACATTAAATTCATAG
AAAATAGAATTAATTAACTACTGTAAAAGTATAAATCTTTGTAAAAATGG
TCTTTCACCGTTTTATGGACATTTCATATGCTTCTTATTTTTCTCCTACC
AAAAAGAGATTTGTCGTACACCTCATCAAAAAATTACACTCGTGGTTGTG
TATGATACCACCCCTCGAGCGTTTCCTTTTGACTATAACAGTCGGCCAAT
CAAAACCATGTGCGAAAGCCCAATTAACACATACAATACCACCCTGTAGA
AGAATTTCATACGGATCGGCACCACTACTTCTTTGTGCACCTCCTTGTAA
AAGAACTTCGTACGGACCGACGCTCAATACACGCTGAGCCCATTCGTCAT
CTTTATTTTTGTCATAAACTGAATATTTTTTACTTAAAATACCCTCGATA
ACTAATATTCCACCAGTCGTCAGCTCTCTAGCTTTGTCCAATGCTTGGAC
TACTGTACTGCAATAAATTGGGTGGCACCCACGTGGAAAGTTGGGCGGTG
GCGTTGTCAATGCATCAGCATAGGGGAATTTTTTTTCATTTGCGATTTTT
TGGGCTTCTAAGACAATTTCTTTGCTATTTCTTAAGTTTAGTGTGAGATT
TATTGTTGTATATGCACTTATGTTTATAAACTGTTGGCGGATGGAAGCAG
CTGAGGCAATCCAAATTACTTCAATTGAAGCGGGGAGCTCAATTTCTTCC
TCGATAGGCCATTCGTCCAAGAAAAGTGCTTTGATTCCTCTTGAAAGTAC
TTGTCGTACTCGCAAACTTTCTTCCTATATTGAAAATAAAATACCGTATT
ACTTCGAAAATTTTTAGATTTTTAGGAGGGGTGTTTATTCGAGGGAGCGT
TTAAAAGAAGGAGGCGTTTATTGAATAATTTAGAACCGAGTATAAACTGG
AAACTTATTTTGCCTTTTCATCATGATTTAGTACAAATATGTCAATTTTA
GGGATATAGAAACAGGTCAAAACCAGATCGAGTTCTCAAACATAGAGTTT
ACAAAAATCATGGCGAGAATCCAAATTCAGTATGACTTACTGTTGATGCT
ATTATTCCAATGCCGTGTTTTTGTAAGTCGTACTTCAGTCGTCTTTCCAG
TAAGCCTGCTAGTTGTGGCCCATTATTTTTATGAACCGCATACATAATGT
TTCCCTGAAACTTCGGGTCATTGCTCAGTAACAGAGCTTTTTGTTGGAGA
AGAAAACTTTTGCCTGTACCGTAACCACCCTTTATTATGACTTTTCGGTA
TCGAGGCTCGTCGCTAATAAGCGCTGGTAGTTGTTCCTTGGAATGGAACA
GAATGGTATGACTGGTACATACTGAATCGATAGCTTCACTGATGTATTCT
ACCCAATTTGTGGTTGTGATTGGTGCTATTTGACCCTTCTTTGACACGTG
TATAGCGAACACAATCAATCTTAAGACGTTTTTGAGTTGATATATTGGAG
GTAATAATGGTGTAATTTCGAAATGGTAAATAGGAAAGTGCCTAAAGATG
GACTCTAACCATGATTGCAAATCAGTTTTAGTGCTGATATAGTGTAAGCT
TTCAAACATAAGTTCCTCCACGCCGACACATATTACAGGGAAAAACGTCC
AACCTTCACCGAACTGATCACCCAGTCTTTCTTCGAATAAACTGTGGTAT
TTTTCTAGTTGGTCAAATGCCTTATCAGTGAGTTGTCGTTTCATTTCAAT
CCCGATGACGAGTTTCCTGGACCAAGAGAAAATGACAAGATCAAACTCTT
GGTGCATCTTCTTTTTGACGTTGGTTAGAAAACAGACTGATTGAAGAATC
ACTGTATCGTTCAGGATGCTTTCTCTATTCATGGATTCAAGTCGGTCGAA
AATTTTATGCTCGATCTCTTCGCCTCGTTCGGGAAGCTTTAATTCAAAAA
ACCATCTCATGTTTGAATCTTCAGGTGGGTTTTGTTGAATCAGCTCTTCA
ACTTCTCGATTTAGATACGATCTACCATTTTTGTTTTTGTTTTGTAATTT
CTGAAGACAAGTCTGAAGCTTAGTTTCGAGCTCAGATCCTGGTGATTCTT
TTGCCAACTCAGAAATACAGTTCTGAATGAAAACATCCGTCTTTGAAATT
GTCGAAAAATTTATTTTCTTTAATCTCAATTTTTTGGCATGTATAGACAT
AATTTTTGCATTCAGTACCCATTGGTTGAAAGCTTTGGCGTTTATATCTT
TAATATTATCCTTTGAAAGTTTTTCCAACTGAAGAAATTGCTGCAACTCT
GCCGTGAACCAATTTTCTTTCGACTCCTTAAGCATATTATCCAGTGTTTC
GAGAATCAGCTTTTCAATGTCATAATCTAGAAGTGGCAGAGATGATTTTT
TGGTGTATTGATTGGATCGGAAAACTGGTGGTATAAACACTGGCTCGTGC
CGTGATTGGTTGAAAATTGACGATTTTCCATACTCTCGTTCAAGCAAGTA
GTCGGCAGCTTGAATTGGATCGGTGAATGTTTGGCCATTACCAAGGTTGA
ATTGTTTAGCTTGCTGCTTCAAAGTTTTTGATGAATCCCTCGAAACCTGT
TGATGCAATGATTTTTGTACTGTACATTTTGTATAATCAATATCTCTTGG
TTTTAATGTTAACAATTTCTGTCTAAGATCGCAAGTCATCCTTTTTGCAA
CAAGATTTCTTCTCAACTTGAATCTTGATAGTGTTTTTTTTCAATTCGGA
TAGTTTTCATATCATTAAAACTATGGTAATATAATGTTTTATTCATCATT
TTTTAGGTTTTCATTACATTGTTTCAGTTCGTGGTTTGTTTTCATATGTC
TATACCCTTTGATGAATTTTTTATATACAATCAATATACACTTATTTTTT
ATAAGCATGTCCAGGCATAAATCTCGAAAAAATTTAAGTGGGCCTCAGTT
TGCGAAATTTCAAAATTTGAATTTAAGATTTGCTAAAATACTCTATGAAA
ATCGAAGTTAGAGCCCCAAAAATATTTCTTTATTTTCCATGGACCAAGCT
CTATCCACCTTCTTTGATTGGAGCTTTTAGAAAAAGGTGGTACCCTAATG
GTAGCACGACTGGATGATGGTCAATTTGTAATTCAATCAAATTTTCCGCT
TAAAATTTTTTAAACATCGTTGAGGAGCGCTACCATTAGGGTTACCACTT
TCAAAATCTCTGGTTGAAGACTTTGCTTGGTCGGGATCGAGAAACTGTGA
CAGGCTATATAAAGGTCAGTTAGGGGAACTGGTGTTTTAATCTCATATTC
TCGCATTAAAAGAAAAAGCTTTAAGTCTATTTTTTGGAAAATTGAGTTAT
GACCATACTGATGCTTTACGCCTCATTTTTATCGATTTTTTGACTTTTAA
AAATCCATCAAAAACCAACCTAAAGTGGTCTAATTTTAAGCTAAAAAAAA
GCCTAAAAAGTCTAACGTGGAAGTAATTTTGGACTTTTCAGCCATACTAT
CTCAAGAAGGTGTTTGTTTTACTGACAACATGTTTGGGTGCATTATCATT
CGCTTACCTGGGTACAGATCTCTTCGATGTCGTGCGGTCGCTTGGTTTGT
TCGCTAGCACTGTTACCGTTCTTATGTTCGGCTCACCATTATCTGTTCTA
GTAAGTATCTGCAATACCTTATCGGCCAAAACTTAGTCGGCCCAAGTGAC
CAAATTTTGGCTTGGTGACTAAAATTAGGGCAGACTAAAAATTTGGCCCG
AATAAAATTTGGGCCGACTAAAAATTTGGAAATGGCCAAACCTTAGTTAT
TAGTCGGCCCTTTGTGACTAAATTTTGACGAGGTGACTAAAATTAGGGCC
GACTAAAAATTTGGAAATGGCCAAAACTTAGTTATTAGTCGGCCTTTAGT
GACTAAATTTTGACGAGGTGACTAAAATTAGGGCCGACTAAGTTTTGGCC
GATAGGTTACATAACAATGGGACTGGGTTCGAGTTAAAATATTATCTTGT
TCTTGGATCTATGAGCACGCTATGATGGTATTATTCCAGACTTTAGATGC
CCTTTCATCTTCTGATAAACTTATATAAGAGGATAACTCTTTGGCGAAGA
AATTGAGAAAAATCTTTTGATTAAAATTGTCCTATATATGTTAAATGTGG
TCCAATAAAATTAGTAATAGGAGCATTTAGAATTTCCACCAATATGGAAG
CAAACGTTCGATTTGCGTAAGGGATTGTCTTACAGATACGAACATTCGCT
TCCATAATGGCGGAAATTACGTTACTTAAACGAAAGAGAGAGAGAGTTCT
CTGCACCTGAATTTAAATCGTCACTTTATCACTTTCGTTTTCAGCGTGTT
GTCATAGCAACGAAGAGTTCCGAACAAATTTCTTTTCCTTTATCTCTAAT
GACCGTTTGTAATTGTTTTTCCTGGCTTGTGTATGGTTATCTTATCAAAG
ACAGCTATGTACAGGTTTGTGTGGTGTTCTTTTTATGAAAATCTTCGTGT
TTGGACCAGCGAATAATTCTCAATTTGAATAGTGACTGGTTCCCTTAAAT
GGGCACGTTCTAAGCCCATTTCTAAAGTAACGGTATTTTACCCTTGATTA
AGTTTCCCTTAATTTCGACGTGATGTCATGTGTTTTAAGGTCTGTTTCCA
TCGATCGCGCGACCGTGCACGCCAGGGCAAAATTTCCTAAAATAACCTAT
CGACGTCACAAATTCAATTTTCTTGTACTCAAAAAGTGTACGCTCTTGTA
CGCTTTTGTGCTCTTTTCTACGCTGAAAATTTTCAAATTTTTTGAGCGTA
CAGGAGCGCACATCTCAATTGATAATTTTTCAACCAATCAAGAAAGAGAA
AAACTGCTGAGTAAACAAAAAAATGTAAACATACAGATTGTGTATGTTTT
TGATGGAAATCAAACATTGATCGCGCGGAGTGTGCGGCCAAATCTATTTT
AAGAATTTTGGCCTAGCGTGCACGCTCGCGTGATCGATGGAAACAGGCCT
TTAATAGATAATTAATTACGCTTTTATATCGTTTGGGATGTTCGGAGGTT
TCACATTATGTACGTAATGTTATGCACCCCCTTTTCTGGGATTGTTGTAA
CTTCTTTTAACAAATCTATCTTCTCATTTTGCTTACTTTTTTATTTTCCC
TTCTTTTCTAGGTACCCAATTTCTTTGGGCTTGTTCTAGGTATTATCCAA
GTCCTAACGATATACCAATATCCAAACAAAACAAGCCGTGTGGGTTTAAC
GTCTCAAGTGTAATACAATCAATTTTTTCTTGGCCCTATTAAATTGAAAA
AATTATCTTGATTTTTACAAGAAGGTTATTGAGTAACTGACGCGTTCTGT
GAGGCTAACATCTCTTGGCTTTAGCAAGGTCAACCTCCTGTAAAATGAAA
TATTGAGTAATAATTATGTAATATGTTCTGGTTGATCTTAATCACATAAC
GTTTGTCATTGGATTGCATCACCCACTTTTACATGTACAATGTGATCACC
AAATGCATGTTTCTTGGATAATGCTTCTTGTCCATGCTTTTGGATAATCT
ACATTTGTCTATGCGAACCAAAGCGTTTGTTGACTTGACTGGATATCTAT
GTGAATTTTGCGGCGGGTGTGATTGGGCTTTTCCAGAAAAAAAACCGTAT
ACCCCCTGTTGAGGAGGGCCCTTCCTCTGTGGCTGGAATTCTGAATTTTA
GTAGGATTTAAAAAGCTACCCCATGGAATTCCAGTTATTTTTGACAGATT
TTTGTATCTCAATATGGAATTCCGCCACATATCAAACCTTACCCCCTTTG
GAACGGAAATGAACTCCTCAACATTGGGTATACGGTTTTTTTCTGAAAAA
GCCCATTTTCAATTGTTTTCACAATGAACATTATATATATTGTTGTATCA
TTTTCGCTTCTCGATATTTTAGATGTTTCTATATATTGTGATTTTTAGTT
CATGATGACTTTGCATGCGGTAGTTCATTTTTAACTTAGGGTGACAATAA
TACAAATTTAGAGAATTATTTTTGATGTGCATTTTCCTATTTATGACTAC
GAACAAAACTGGTAAGATAATATAAGGTTTTTACAAAAAACTTGATCCTA
ATGCTTGCTATTAGATATTTTCCTTAGACAAGCCATATTCTAAAAAGGTA
GGGTAGCGTCCGTTTTAGACCAAAAAGGGCACTTCCTACTGTTTCTCCAC
AGAAAATCATAATTTGTTACAAAGAAGGGCAGGGTCTGACGCCTAAAAGG
CATGAAGAATGGTCTGTTAGATTTTGTATGCAGTGTTTTCTGCAGTGGAG
AGTTTTTTATTAGGTTTGATCCTGACTGGCCGAGAACGACTGTAAATCAT
AACTTTCTACACTTTAGCGGTCTTTAGAGGTTACTCTTCGAGAGTGAAAA
TATCACTGTAATCAAGATTTCAAATTCTAGTGCTCTAACAGTCGAGTGTA
TGTTTTTTATATAAGAACAAGCTATATAAAAATACGAGGCAAAAATGTCA
AGAACAAATTAAGAGCATTTTAAGTCTTTG

Coding sequence (CDS) from alignment at sc0000031:269768..278697-

>TCONS_00003795 ID=TCONS_00003795|Name=TCONS_00003795|organism=Clytia hemisphaerica|type=CDS|length=3906bp|location=Sequence derived from alignment at sc0000031:269768..278697- (Clytia hemisphaerica)
GTACCCAATTTCTTTGGGCTTGTTCTAGGTATTATCCAAGTCCTAACGAT
ATACCAATATCCAAACAAAACAAGCCGTGTGGGTTTAACGTCTCAAGTGT
AACGTGTTGTCATAGCAACGAAGAGTTCCGAACAAATTTCTTTTCCTTTA
TCTCTAATGACCGTTTGTAATTGTTTTTCCTGGCTTGTGTATGGTTATCT
TATCAAAGACAGCTATGTACAGCCATACTATCTCAAGAAGGTGTTTGTTT
TACTGACAACATGTTTGGGTGCATTATCATTCGCTTACCTGGGTACAGAT
CTCTTCGATGTCGTGCGGTCGCTTGGTTTGTTCGCTAGCACTGTTACCGT
TCTTATGTTCGGCTCACCATTATCTGTTCTATTGTTGTTTATGGACGATC
TATGGTCATTTGAAGGGCGATTGGTTATTGATATTGGTCAACGCAGTGGG
ATGTATATTGCAAGCGATTTACATTTTCATCTTCATGCAGAATTGTGATA
ATAAGCGCAGCTGTATTGAAAGTCCACCAACAAAAATCTGTTAAAAATGT
CAATTTTTTGCCATATCTTGCTGCTACTCTGAAATGGATTTGATAACTCT
GGTACAAGGATGTGCAATGGTCTTCACTTTTGGATTCTTCTTTTCGGGAA
GGTACCCAATTTCTTTGGGCTTGTTCTAGGTATTATCCAAGTCCTAACGA
TATACCAATATCCAAACAAAACAAGCCGTGTGGGTTTAACGTCTCAAGTG
TAACGTGTTGTCATAGCAACGAAGAGTTCCGAACAAATTTCTTTTCCTTT
ATCTCTAATGACCGTTTGTAATTGTTTTTCCTGGCTTGTGTATGGTTATC
TTATCAAAGACAGCTATGTACAGCCATACTATCTCAAGAAGGTGTTTGTT
TTACTGACAACATGTTTGGGTGCATTATCATTCGCTTACCTGGGTACAGA
TCTCTTCGATGTCGTGCGGTCGCTTGGTTTGTTCGCTAGCACTGTTACCG
TTCTTATGTTCGGCTCACCATTATCTGTTCTATTGTTGTTTATGGACGAT
CTATGGTCATTTGAAGGGCGATTGGTTATTGATATTGGTCAACGCAGTGG
GATGTATATTGCAAGCGATTTACATTTTCATCTTCATGCAGAATTGTGAT
AATAAGCGCAGCTGTATTGAAAGTCCACCAACAAAAATCTGTTAAAAATG
TCAATTTTTTGCCATATCTTGCTGCTACTCTGAAATGGATTTGATAACTC
TGGTACAAGGATGTGCAATGGTCTTCACTTTTGGATTCTTCTTTTCGGGA
AGGTACCCAATTTCTTTGGGCTTGTTCTAGGTATTATCCAAGTCCTAACG
ATATACCAATATCCAAACAAAACAAGCCGTGTGGGTTTAACGTCTCAAGT
GTAACGTGTTGTCATAGCAACGAAGAGTTCCGAACAAATTTCTTTTCCTT
TATCTCTAATGACCGTTTGTAATTGTTTTTCCTGGCTTGTGTATGGTTAT
CTTATCAAAGACAGCTATGTACAGCCATACTATCTCAAGAAGGTGTTTGT
TTTACTGACAACATGTTTGGGTGCATTATCATTCGCTTACCTGGGTACAG
ATCTCTTCGATGTCGTGCGGTCGCTTGGTTTGTTCGCTAGCACTGTTACC
GTTCTTATGTTCGGCTCACCATTATCTGTTCTATTGTTGTTTATGGACGA
TCTATGGTCATTTGAAGGGCGATTGGTTATTGATATTGGTCAACGCAGTG
GGATGTATATTGCAAGCGATTTACATTTTCATCTTCATGCAGAATTGTGA
TAATAAGCGCAGCTGTATTGAAAGTCCACCAACAAAAATCTGTTAAAAAT
GTCAATTTTTTGCCATATCTTGCTGCTACTCTGAAATGGATTTGATAACT
CTGGTACAAGGATGTGCAATGGTCTTCACTTTTGGATTCTTCTTTTCGGG
AAGGTACCCAATTTCTTTGGGCTTGTTCTAGGTATTATCCAAGTCCTAAC
GATATACCAATATCCAAACAAAACAAGCCGTGTGGGTTTAACGTCTCAAG
TGTAACGTGTTGTCATAGCAACGAAGAGTTCCGAACAAATTTCTTTTCCT
TTATCTCTAATGACCGTTTGTAATTGTTTTTCCTGGCTTGTGTATGGTTA
TCTTATCAAAGACAGCTATGTACAGCCATACTATCTCAAGAAGGTGTTTG
TTTTACTGACAACATGTTTGGGTGCATTATCATTCGCTTACCTGGGTACA
GATCTCTTCGATGTCGTGCGGTCGCTTGGTTTGTTCGCTAGCACTGTTAC
CGTTCTTATGTTCGGCTCACCATTATCTGTTCTATTGTTGTTTATGGACG
ATCTATGGTCATTTGAAGGGCGATTGGTTATTGATATTGGTCAACGCAGT
GGGATGTATATTGCAAGCGATTTACATTTTCATCTTCATGCAGAATTGTG
ATAATAAGCGCAGCTGTATTGAAAGTCCACCAACAAAAATCTGTTAAAAA
TGTCAATTTTTTGCCATATCTTGCTGCTACTCTGAAATGGATTTGATAAC
TCTGGTACAAGGATGTGCAATGGTCTTCACTTTTGGATTCTTCTTTTCGG
GAAGGTACCCAATTTCTTTGGGCTTGTTCTAGGTATTATCCAAGTCCTAA
CGATATACCAATATCCAAACAAAACAAGCCGTGTGGGTTTAACGTCTCAA
GTGTAACGTGTTGTCATAGCAACGAAGAGTTCCGAACAAATTTCTTTTCC
TTTATCTCTAATGACCGTTTGTAATTGTTTTTCCTGGCTTGTGTATGGTT
ATCTTATCAAAGACAGCTATGTACAGCCATACTATCTCAAGAAGGTGTTT
GTTTTACTGACAACATGTTTGGGTGCATTATCATTCGCTTACCTGGGTAC
AGATCTCTTCGATGTCGTGCGGTCGCTTGGTTTGTTCGCTAGCACTGTTA
CCGTTCTTATGTTCGGCTCACCATTATCTGTTCTATTGTTGTTTATGGAC
GATCTATGGTCATTTGAAGGGCGATTGGTTATTGATATTGGTCAACGCAG
TGGGATGTATATTGCAAGCGATTTACATTTTCATCTTCATGCAGAATTGT
GATAATAAGCGCAGCTGTATTGAAAGTCCACCAACAAAAATCTGTTAAAA
ATGTCAATTTTTTGCCATATCTTGCTGCTACTCTGAAATGGATTTGATAA
CTCTGGTACAAGGATGTGCAATGGTCTTCACTTTTGGATTCTTCTTTTCG
GGAAGGTACCCAATTTCTTTGGGCTTGTTCTAGGTATTATCCAAGTCCTA
ACGATATACCAATATCCAAACAAAACAAGCCGTGTGGGTTTAACGTCTCA
AGTGTAACGTGTTGTCATAGCAACGAAGAGTTCCGAACAAATTTCTTTTC
CTTTATCTCTAATGACCGTTTGTAATTGTTTTTCCTGGCTTGTGTATGGT
TATCTTATCAAAGACAGCTATGTACAGCCATACTATCTCAAGAAGGTGTT
TGTTTTACTGACAACATGTTTGGGTGCATTATCATTCGCTTACCTGGGTA
CAGATCTCTTCGATGTCGTGCGGTCGCTTGGTTTGTTCGCTAGCACTGTT
ACCGTTCTTATGTTCGGCTCACCATTATCTGTTCTATTGTTGTTTATGGA
CGATCTATGGTCATTTGAAGGGCGATTGGTTATTGATATTGGTCAACGCA
GTGGGATGTATATTGCAAGCGATTTACATTTTCATCTTCATGCAGAATTG
TGATAATAAGCGCAGCTGTATTGAAAGTCCACCAACAAAAATCTGTTAAA
AATGTCAATTTTTTGCCATATCTTGCTGCTACTCTGAAATGGATTTGATA
ACTCTGGTACAAGGATGTGCAATGGTCTTCACTTTTGGATTCTTCTTTTC
GGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002112XLOC_002112Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003795-proteinTCONS_00003795-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003795-exon-sc0000031-1575043694:278594..278697TCONS_00003795-exon-sc0000031-1575043694:278594..278697Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1575043694:277799..277876TCONS_00003795-exon-sc0000031-1575043694:277799..277876Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1575043694:276882..277005TCONS_00003795-exon-sc0000031-1575043694:276882..277005Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1575043694:272648..272806TCONS_00003795-exon-sc0000031-1575043694:272648..272806Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1575043694:271834..271953TCONS_00003795-exon-sc0000031-1575043694:271834..271953Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1575043694:269768..271136TCONS_00003795-exon-sc0000031-1575043694:269768..271136Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1510915933:278594..278697TCONS_00003795-exon-sc0000031-1510915933:278594..278697Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1510915933:277799..277876TCONS_00003795-exon-sc0000031-1510915933:277799..277876Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1510915933:276882..277005TCONS_00003795-exon-sc0000031-1510915933:276882..277005Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1510915933:272648..272806TCONS_00003795-exon-sc0000031-1510915933:272648..272806Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1510915933:271834..271953TCONS_00003795-exon-sc0000031-1510915933:271834..271953Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1510915933:269768..271136TCONS_00003795-exon-sc0000031-1510915933:269768..271136Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1491911889:278594..278697TCONS_00003795-exon-sc0000031-1491911889:278594..278697Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1491911889:277799..277876TCONS_00003795-exon-sc0000031-1491911889:277799..277876Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1491911889:276882..277005TCONS_00003795-exon-sc0000031-1491911889:276882..277005Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1491911889:272648..272806TCONS_00003795-exon-sc0000031-1491911889:272648..272806Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1491911889:271834..271953TCONS_00003795-exon-sc0000031-1491911889:271834..271953Clytia hemisphaericaexon
TCONS_00003795-exon-sc0000031-1491911889:269768..271136TCONS_00003795-exon-sc0000031-1491911889:269768..271136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:269768..278697 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000626878	3.30133e-06	3.44655e-05	2.85969e-09	6.06665	5.5876	9.09641	2.4777	1.07778e-09	1.36884e-09	1.50719e-07	2.30373e-07	0	0	2.85645e-06	5.92609e-05	2.24202e-08	0	2.09027e-08	4.22713e-06	0	0.18426	2.88945e-08	2.58951e-06	1.60145	0.607295	1.0467e-05	0	3.62134e-07	0.000199389
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004316SWEET_sugar_transpr
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00003795 vs. Swiss-Prot (Human)
Match: SWET1 (Sugar transporter SWEET1 OS=Homo sapiens GN=SLC50A1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.185e-29
Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 1 
Query:  118 KVHQQKSVKNVNFLPYLAATLNCCLWTIYGHLKGDWLLILVNAVGCILQAIYIFIFMQNCDNKPY-YLKKVFVLLTTCLGALSFAYLGTDLFDVVRSLGLFASTVTVLMFGSPLSVLRVVIATKSSEQISFPLSLMTVCNCFSWLVYGYLIKDSYVQVPNFFGLVLGIIQVLTIYQYPNKTSR 663
             +   +SV NV FLP+L   +N   W  YG LKGD +LI+VN VG  LQ +YI  ++  C  K    L+   +L    LG   F  L  +    ++ LGLF S  T+ M+ SPL+ L  VI TKS++ +S+PL++ T+    SW +YG+ ++D Y+ V NF G+V   I+    ++YP +  R
Sbjct:   32 HMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDR 214
The following BLAST results are available for this feature:
BLAST of TCONS_00003795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SWET13.185e-2937.70Sugar transporter SWEET1 OS=Homo sapiens GN=SLC50A... [more]
back to top