TCONS_00003779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003779
Unique NameTCONS_00003779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003779 ID=TCONS_00003779|Name=TCONS_00003779|organism=Clytia hemisphaerica|type=transcript|length=1798bp
GTTCTGTTGAAAATTATAGTTCTCAGTCGGTGATGATGGTGAACTTGTAC
CAAGATATCAAAACCTTCCAACAAGACAACCCTCACAAATCTTAGCTGAC
GCTCCTCTTCCACCAAGACCACCACGACGGCCCTCTGACCCAAATATAAC
GAATTTCTATACACCTCACCATCAAACTATTGCTAAAAGGAACAGTGTGC
CGCCAAGAGGACCACCCTCTAGACAAGGAAGCTTTGATAAAAACAGCCCT
GTTTCCCCAAGAGGTCCACCTTCAAGACAACCAAGTTTTGAGATCAACAA
CAACAGAGGAATGCCATCTAGACAAAAAAGCTTTGAACGATGTAAAAATC
CTGAGGCTGAACTGTTTAAAGTCGGTTTACAGAATCGTGTCAAATATTAC
CATCGTGGTATGAAAAGACAAGAAGCTGAACAGTTACTTGAAACAAGACC
CATTGGAACTTATTTAATTCGAGATTGTAGCAGAGatgaaaaattctttg
ttttgaGTTATAGAGATTATATTGTAGTCAAGCACCTTGAAATTACGTAT
AAGGGGACTGGTAATTACagctttgatgaaaaaaatgagTACGTGACAGC
CGAGTTTGTTTCACCAGAAGTTGGAGTAGAGCTCTTTATTGAACAAAAAC
ACCGAGCTAATCGTCAAGAGTTTCATCCCCATTCATTGACAGACATCTTC
AGAAGACCACCATCTCCGGAAAATTCTTTACCACCTTTTACCCAAAAGAA
ACTGATACCAACATCTCCTGGTCACGAGTATGAAGAAGTTAAAGATACCG
TCATCAGTTCTGGGagaagaaattcaacaaaaagtgATATATCGGCGATC
TATTTCCACATCGACAGAGCCACCACCAAAGATCCAAAGGATCCTAAGTA
TGTGAACTATCCACGCAGAGGCTCAGATCCCACCCCTTCAACAAATAACC
AAAGATATGTGAATTATCCTCCACCATATAATTCAGTGTTACAAGATTAT
GAAAGTGTGACAAGTCTAAATGGCGGCAAGGAAAGACGGCGTTCAAACTC
CGACGAGGAACATCATTACGTCAATGGTAACCAAGGTAACGAAGAGCCTC
ATTATGAGAATGGGACTAAGTACGAGGATGGGAATGGTTACACGCGGATG
GAAAACCCCTACATACGAATGGGGCGTAATGGAGCAACCACACCCAATGG
GCGTGAAATACATGGAGACACAGGTGCCGTAGAGCATGAAGAGAATGTCA
AACACGAACCTTGAAGTAAACACAATTTCATGTAATAATTGTTGTGTCAA
CGGTGGTCCTAAATAGACACAAAGTGCGACTTTCAAAACGGTAGAATCAA
TAGAAAGAAGCAATGTTTTGGTTACAACACGTCATCTTCCTTCGCTTCGA
GCGTaactcttcgggatatgcgcCCTGCTCTGATTTTGAATATTGATTTG
AATAAGAAGTAAAAGCCTGGAGCTCTATTTTTGGATGGTATTGGATAAAA
CTTTTGAGTTATATTGCATTGTTGGGTTGACACCTTTTTAATTTTCGTTT
GATAAACTATATCATCATACAAGCCTATAATCACAGGCAAGAACCTTGCA
AACTTCCCAATATCTTAAGGTCAATTGTGGACAGAATGTGACCCTCTAAT
AGTTACTAAAACCGTAGTTTAGCAAGCTAGatgactaattcagacatagt
agaaataaagctaaAAGTAATGGAGGAAACAATTTTagttatacaaacta
aatccatCGATGCTAAATCCCATatcaataatcgtattatcatataac
Run BLAST on NCBI

transcript from alignment at sc0000031:94570..100174-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003779 ID=TCONS_00003779|Name=TCONS_00003779|organism=Clytia hemisphaerica|type=transcript|length=5605bp|location=Sequence derived from alignment at sc0000031:94570..100174- (Clytia hemisphaerica)
GTTCTGTTGAAAATTATAGTTCTCAGGTATGCTGCGCTGGTAATCACTCT
ACTTCTGCTCTTCAGTTTATAGAGTCTTGCGACCTGAGTCTGGACCGACA
ACTATCTGTGACAAACATATTCCAAGATCCGAAAAAAGGAAAATATTCAT
TCGACTTGTTCAACAACAAAACAAAAATGTCATTTCGAACTTACGACAAA
ATGATCATGTACCGTTGGATCTACGTTTTCCATGATTTAATCGCTCAAGG
AAAAAGTGCAGATGAATTGCCCAATTTGGTGAACAATAAAATTCCAAGCT
GTATATTTTATATAGGTAGGGATAATTTGAAAAATTGAAGAAAGTGATTA
ATCATTAAGAATGTAATGTGTGCGTAATGACCCAAAGTTCTAATTGTAAA
GGTTTTCTGAAAAATAGATCTTAATGCAGACAAAGGCAAAGCTAGAGTCA
AGCATAAATTAACAACAAACTCTTTGTTCATCGAGGCATAGCGGCGTATC
TTAAAATTTCTTCTATTTATATATAGTCGGTGATGATGGTGAACTTGTAC
CAAGATATCAAAACCTTCCAACAAGACAACCCTCACAAATCTTAGCTGAC
GGTGAGACTTGTAAATATCCTTAGCTCTGACACAACATTATTGTAGACGC
TGCTTATGGTTTTTATAACGTTGTATCTCCTCATGGGTATGCCATAGGTA
ATTTATAGCGAATTCAGATTATTAATCATATCATACTTGAGTGATACTTT
TTACCCCAGGGAAGGAAAGCTGAAATAAAGCCAAATTTGAAACCAGAACA
TTTGGAGTGGGAGGGCAAAACATTTAGAAAAGATTGCCGCTCGCTACGTT
TAAGTGATGAAGAAAACTGTATCTTCTAAACATCATAAAAAACCTTTGAT
TAGATAAAAACACACTAATGACATATCATCAAGTGTATATCTAATCAAAA
TTAACATTTTATCCACAGCTCCTCTTCCACCAAGACCACCACGACGGCCC
TCTGACCCAAATATAACGAATTTCTATACACCTCACCATCAAACTATTGC
TAAAAGGAACAGTGTGCCGCCAAGAGGACCACCCTCTAGACAAGGAAGCT
TTGATAAAAACAGCCCTGTTTCCCCAAGAGGTCCACCTTCAAGACAACCA
AGTTTTGAGATCAACAACAACAGAGGAATGCCATCTAGACAAAAAAGCTT
TGAACGATGTAAAAATCCTGAGGCTGAACTGTTTAAAGTCGGTTTACAGA
ATCGTGTCAAATATTACCATCGTGGTATGAAAAGACAAGAAGCTGAACAG
TTACTTGAAACAAGACCCATTGGAACTTATTTAATTCGAGATTGTAGCAG
AGATGAAAAATTCTTTGTTTTGAGTTATAGAGATTATATTGTAGTCAAGC
ACCTTGAAATTACGTATAAGGGGACTGGTAATTACAGCTTTGATGAAAAA
AATGAGGTATTATTTCCAATTCTTTTGTGCTTTTGGAGAATGTGGTCTTT
TTGAAACTTGGATACACAGATATAAAACTTTTGATACTACATATATCTCT
CCTGTGCAATGATCTCTCTTATAGTCTAGGGCTTATTATAAGTATGTCTT
GTCTTGTTTTAATTTAGTCTTTTGTTCAAATTTTGTTCAAATTTTGATCT
CCTACTGTAAACGCATTACAATAAAGCCTCATAATCTTTCTTGTTGGTAC
TTCACCATGGCAACCATACATTTGAAATGAGGCTAAATAACATTACAGTA
GTAGAAAGCAAACGATTATTGTACAATTTCTTTCTGCTGTTTTTTTCTCT
CAGTACGTGACAGCCGAGTTTGTTTCACCAGAAGTTGGAGTAGAGCTCTT
TATTGAACAAAAACACCGAGCTAATCGTCAAGAGTTTCATCCCCATTCAT
TGACAGGTAAATATCCTATTAAAGAGACGGCTCAAATCAACTGGAATAAG
AACTTGTAATTTCTTTTCCGAGATCAAGCTGTTCTTTCTTTTCGTGATTT
CAGGCTCGAATTCGTTCACGTTTTTAACCCACTTACTTAATTCACTTTTT
GGCTTGAAGAGGTCTAAAATACAGTATTTTCTTGGCAATTTTCGATTCCT
GAGGCTGATATTATTCTTAAATTATTTTCAGGTTTTGGGCAAATTTACCT
CTTTCCAGAATAATCGGAGAAATGTCAAGCAGGAAATGATTATGCAATAC
TTTCCTTGACTTTTCTTTCCTATAGGTGCCTCTTGAGTTATTTCAATAAT
TGTCTAAGTATACCAGGTAGGGACCTCGACAAAAACTATATCTGTGTGGC
AAAAGCTCAATTTTCGTTTTGCTTCTTTTTCATAGACATCTTCAGAAGAC
CACCATCTCCGGAAAATTCTTTACCACCTTTTACCCAAAAGAAACTGATA
CCAACATCTCCTGGTCACGAGTATGAAGAAGTTAAAGATACCGTCATCAG
TTCTGGGAGAAGAAATTCAACAAAAAGTGGTAAGAGTACAGAATATAGCT
TTTAGCATATTCATTCATTTTAGCATATTCTTAGGCTAACACGCCAGCCA
AAGTTCGAAATTATGTCAGACAAACTTTTAGCATGTTTCTAGAGTAGGGC
GTTAATCGAAATTCGAAATGATGTCAAATAAAAGTGATCGTATGAACTAT
GAGTTAGGTAATCGTTGAAGCTAAATTTGTAAGGTTGCAAATTGTTTTAA
AAATGTCTGAAACAATCTTCATAAAATTTCTTGTAATTGGTGAGCAGCAG
TAAACTTGGAGGATGGAACCAAAAAGAATTATCACTTAAGTGTATTTTTG
TGTAAGAACGACAGGTCATTGTTGTTATTCGTGTTAATTAATTACTCCTT
TCTCATTTAGATATATCGGCGATCTATTTCCACATCGACAGAGCCACCAC
CAAAGATCCAAAGGATCCTAAGTATGTGAACTATCCACGCAGAGGCTCAG
GTATGTTTTATTTGCAGTAGTTTAATCCGGGAGTTTAATGTTTCAACTTA
TAAAATGGAGTCTGGTAATGTCCAAGAAATTGTACCTTTTTGAAAGATCG
AAGATTTATGTAAGGCTTACAAATATCAAGTCACCTTCTAAAGGCTCACA
ACAATCACAAAAAACGTTAATTTTCCCTCTAAAAGGTCACCAAACAAACT
TTCGGGATATTCTAAAGCTTTTCCAAAAATGTTTCTCACAACACTTTCAA
CAATTTCAAACCCGAATTCATTTTTCCAGCACCAGATCCCACCCCTTCAA
CAAATAACCAAAGATATGTGAATTATCCTCCACCATATAATTCAGTGTTA
CAAGATTATGAAAGTGTGACAAGTCTAAATGGCGGTAAGTGAGATTAAAT
TGATAAAAATCATTGTGTGTCTAGCTCATTGATCTATATTTATACTAGAA
ATACGAATAAATATAGTGAATATGAAATAAGCTAAACCAAACCTCCAAGA
TTGAACACCCACAGCTCCAAGAATAGAAATTATACCATGATTCTACCATG
AGTTATTTGAGTTTATGATAATATTCCACTCATCATTATCTTTTTAAACA
GAGACGAAAATTTTCAATTCAAATTTAATGAGAGGTTATGTTTGCATTTC
TTAGTACTGGAATATTATTTGAAAATACTTCTTAATTTTCTTATTATTGA
CATTTCAGGCAAGGAAAGACGGCGTTCAAACTCCGACGAGGAACATCATT
ACGTCAATGGTAACCAAGGTAACGAAGAGCCTCATTATGAGAATGGGACT
AAGTACGAGGATGGGAATGGTTACACGCGGATGGAAAACCCCTACATACG
AATGGGGCGTAATGGAGCAACCACACCCAATGGGCGTGAAAGTAAGTAAT
TTTCTCCCCGCTACTTTTTTTTTGGAACACTTAATGCAATTCTTTTCCAT
TGAATCTTAAATGGTAAAAAATAAAGTCAATTTCCCAGTTGGGCTTTAAT
TGTACAATTGTAGGCTATTTCCCCCTCCGGTGAGTGTGCTCTCTAGTGCA
CACTCAAAGTGAGCATGGTACTCTCGGGTGAAACAAGGCATGTCCCAAAT
ATATTTTGCGTGACGCGCACCGCTTCCAATTATTCCTTAACGTTCATATA
TAGCTCAAAAGAATCATATCAACGATTGGATTTCAAAAAGTGCTGGGTCA
AAAATTTGCATTAAGCCAATCTCAAGATATCGGTCAAAAATTGATTTTGA
CGTTATAAAATACATCGAAAAAACACGTCATAAGTAAGATTCAAATGACC
TCATTATTGAAAAACAGCGATAACTTCAATTTTATTAATGCAATCAACAC
CAAGTTTTGACAGGAGTTGTAAATTAATGATTCTAAAATATTTGTTCAAA
AATTTTCAGAAAATTTGAATGACGTCATTTGTTGTCGGGAAAAATTAAAA
TATGTCAAAAAATGCTGACGTCATCATGAATTTTAAAATTTTTTTCATGA
AATATTTTAGAATCGTTAATTTACATCTTCAGTCAAAATTTTACTTGATT
GTAGTAAGTTAATCGAAATTATCGCCTTTTTTCAATAATAACGTCATTTA
AATTGTCTTTTTGACGTGTTTTTTCGATGTATTTTATAACGTCAAAATCA
GTTTTTGGCCGATATCTTGAGATTGGCTTGATGTAAATTTTTAACCCAGC
ACTTTTCGAAATTCCCGTGTTGATACGATTCTTTTGAGCTATATATGAAA
GTTAATGAATAATGAGAAGCGGTGTGCGTCACGCAAAATATATTTGGGAC
ATGCCTTGTTTCACCCAAGCTACTCGATTAGCTCAATTATTTGATAATTT
GAAAGTCACGGTCAACAAGAAACACTTATAAACGACGCCCTACCATTCGA
TACGCTTTTTTACGATGAAAATCTGATCCCCTTTGACTATCGAATTGGAG
AGCGTCAGCTGAGAAAAAGGCAAAGTCAGTGGTTGCAATTTGCTTGGCTA
AGCCAAGATATACGGACATGAATATTTTGACACGCTTTGATAATTATATT
TCATTTTCTTTCTAGTACATGGAGACACAGGTGCCGTAGAGCATGAAGAG
AATGTCAAACACGAACCTTGAAGTAAACACAATTTCATGTAATAATTGTT
GTGTCAACGGTGGTCCTAAATAGACACAAAGTGCGACTTTCAAAACGGTA
GAATCAATAGAAAGAAGCAATGTTTTGGTTACAACACGTCATCTTCCTTC
GCTTCGAGCGTAACTCTTCGGGATATGCGCCCTGCTCTGATTTTGAATAT
TGATTTGAATAAGAAGTAAAAGCCTGGAGCTCTATTTTTGGATGGTATTG
GATAAAACTTTTGAGTTATATTGCATTGTTGGGTTGACACCTTTTTAATT
TTCGTTTGATAAACTATATCATCATACAAGCCTATAATCACAGGCAAGAA
CCTTGCAAACTTCCCAATATCTTAAGGTCAATTGTGGACAGAATGTGACC
CTCTAATAGTTACTAAAACCGTAGTTTAGCAAGCTAGATGACTAATTCAG
ACATAGTAGAAATAAAGCTAAAAGTAATGGAGGAAACAATTTTAGTTATA
CAAACTAAATCCATCGATGCTAAATCCCATATCAATAATCGTATTATCAT
ATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002106XLOC_002106Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003779-exon-sc0000031-1575043694:100149..100174TCONS_00003779-exon-sc0000031-1575043694:100149..100174Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1575043694:99574..99648TCONS_00003779-exon-sc0000031-1575043694:99574..99648Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1575043694:98719..99206TCONS_00003779-exon-sc0000031-1575043694:98719..99206Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1575043694:98269..98371TCONS_00003779-exon-sc0000031-1575043694:98269..98371Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1575043694:97696..97839TCONS_00003779-exon-sc0000031-1575043694:97696..97839Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1575043694:97225..97314TCONS_00003779-exon-sc0000031-1575043694:97225..97314Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1575043694:96841..96939TCONS_00003779-exon-sc0000031-1575043694:96841..96939Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1575043694:96334..96516TCONS_00003779-exon-sc0000031-1575043694:96334..96516Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1575043694:94570..95159TCONS_00003779-exon-sc0000031-1575043694:94570..95159Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1510915933:100149..100174TCONS_00003779-exon-sc0000031-1510915933:100149..100174Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1510915933:99574..99648TCONS_00003779-exon-sc0000031-1510915933:99574..99648Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1510915933:98719..99206TCONS_00003779-exon-sc0000031-1510915933:98719..99206Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1510915933:98269..98371TCONS_00003779-exon-sc0000031-1510915933:98269..98371Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1510915933:97696..97839TCONS_00003779-exon-sc0000031-1510915933:97696..97839Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1510915933:97225..97314TCONS_00003779-exon-sc0000031-1510915933:97225..97314Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1510915933:96841..96939TCONS_00003779-exon-sc0000031-1510915933:96841..96939Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1510915933:96334..96516TCONS_00003779-exon-sc0000031-1510915933:96334..96516Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1510915933:94570..95159TCONS_00003779-exon-sc0000031-1510915933:94570..95159Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1491911889:100149..100174TCONS_00003779-exon-sc0000031-1491911889:100149..100174Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1491911889:99574..99648TCONS_00003779-exon-sc0000031-1491911889:99574..99648Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1491911889:98719..99206TCONS_00003779-exon-sc0000031-1491911889:98719..99206Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1491911889:98269..98371TCONS_00003779-exon-sc0000031-1491911889:98269..98371Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1491911889:97696..97839TCONS_00003779-exon-sc0000031-1491911889:97696..97839Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1491911889:97225..97314TCONS_00003779-exon-sc0000031-1491911889:97225..97314Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1491911889:96841..96939TCONS_00003779-exon-sc0000031-1491911889:96841..96939Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1491911889:96334..96516TCONS_00003779-exon-sc0000031-1491911889:96334..96516Clytia hemisphaericaexon
TCONS_00003779-exon-sc0000031-1491911889:94570..95159TCONS_00003779-exon-sc0000031-1491911889:94570..95159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:94570..100174 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0202385	0	0	0	0.0301093	0	0	0.0537465	0.0188146	0.0233049	0	0.0446091	0.261656	0	0.149518	0.664904	0.207545	0.626606	0.345162	0.665127	0.15111	0.0947649	0.175607	0.372383	0.374576	0.154142	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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