TCONS_00003777 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003777
Unique NameTCONS_00003777
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003777 ID=TCONS_00003777|Name=TCONS_00003777|organism=Clytia hemisphaerica|type=transcript|length=2489bp
GTTTTTCATTTGTCTCGATCAACTGAGGACGTTCAGCACTTACCGTCCTC
AATTTTTGCAGAGTAGCAACCAAAGAGGAACACAAACATCTGCAACAATC
GACCAATCATGAGATCATTATCAATTGTTACACTCTTTGCTGTAGTGTGC
TGCACTGTAACCTTTGGAACAGTTATCCAACGCAAACGATCATCATCTAA
CAAGAGGATTATATGTTTCTACGCAAACTGGGCTCAATACAGAAAAGGGC
GTGGCAGATTTCTTCCACACCAAATTCCAGCCGACCTATGCACGCATATC
ACCTACGCTCATCTTCAAGTTGACCTCACAACTCACGAGTTGGTCAAAAG
ACAACGAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAACTTAAGAAGA
AAAATCCAGCtttgaaaattatcatttcagTCGGTGGCTGGAAACATGAA
TATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAAAGAACACGTGCTAT
TTTCATCCAATCAGTGCTCAAATGGATTCAAAAAACAGAAGTGGATGGTC
TGTCGATCGATTGGGAGTACCCTACGAAGCGAGGTACTTCCGGCCCTGGA
GATAAGCATAGGTACACATTGCTGTTAAAGGAGCTTAGAGCTGCCTTTGA
TGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGTGTCCTCAGGCCGCA
AGAAAATCGACACAGTTTACGAGCACAAGAAGTTTATCAAGTATTTAGAC
TGGGTCAATGTGATGGCATATGCTTTACATGGAGCTTGGAGAAAATTCGC
TGGTCATCACACAACAATGACTGGAGCAACCAATGTTGAAGATAGCCTAA
ACGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAATCAATCTCGGCGTT
GCAACCTATGGTCGTACGTTCACACTTAAAGATCCTACCAACTATGGTCT
AGGAGCGCCAGTCACAAACCCTGCTCACGGAAAACCAGGAAAATATACCA
GAATCAAAGGAGCTTTATCCTACTACGAGTTTTGTGATCAGCAATGGGAC
CATAAAATTCCCTCATACGACAGCAAAGCCCGAAAACCTTACGCCTCAAG
AGGTGATCAATGGATTGGCTATGAATCACCAAGAAGCATTCGATCGTCCA
TTGCCTACTTGATGCAGAAGAACAACAACCGATTGGGTGGGATCGCTATT
TGGAAATTGGGATATGATGACTTCACTGGTACTTTTTGTCATGAAGGCAA
ATTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTATGGTATAGCATAAA
AACATTGAGATGAATCTTAtattatttattcattcattgtaTTTTTGATC
GGGataattttaagcaaatttaGTGTATTTAGAGATctaattgttttatt
ttctttaatacCTAGAAAGGTTTTCCCGTCTGACTTTATCTAGTGTGTTT
CCATTGTTAATTTTCTGAGCTTGTCTTGTTCTGGTCATGCTTTTAGAAGC
TTCCGATCACGTCTGAACACATCAAATGAGTATACGAATCAATGATCGAG
TCTTTACTGGCCTTGAGAGATTTTAGGTTGATATTGTTATGTTTTTGTAG
ACTTTAGACGATCCATTAACGTGACAAGAAGAGATGAAtgtataaaatga
taaataaaatttgagtttacgaattagaaaataaagtCATTGTTGTGTAA
TGATCGACGAATTTCTTCCCTTCTTCGTCTCATCTTACAGACATTCCTTT
TGCAATTGATATGTAAAGTATTTTGATTTTGTGGTAGAATATGATTTCCA
tttgaataaaatatttgagactttaaaactatttttggtaaatttcagaa
atattatatttttatcaaaattaagaatatatTATTATTTCTATGTATTA
CGGCATATTTatgtaatttcaaaatttacagatttcaaaataagataaaa
aatgaaattgatgaaatattatttttttaaacctttttacCTAATATGTA
CCTTATCTGCACGATTTTAAACATAACTTAAACATTGGAAATAAATAAGT
GACATAAATTAAATATACAAAACTTGATTAAATATGATAAATATTTTGCC
GAATTTTTGTAACAAACGGTCGTTTCTTTCAATCCATTGACACACTAACT
TTTTGAGTGCAGTGAAAAAGACTAGGGAAATTGtcatctttttttattct
tttcaaatttttcgctttcaaaatttattttaaagcaCTAACATAATTAA
ATATATTCTTAAATTCCATCTGAAACTATAATAAATACATGGAGATACCT
CCAATGTTGAAAAGAATTGGTatatttatcatatttttctgtttaattgt
ctccaaaaagggactggatctagtggtatTGATTTGCTACAACCTCAAGC
CATTGGATGGAGACAGTCAAATTTTACACTGGGCCACGTATCAGCACCAT
CCAGTCTACCACAAAGCTTTAAGTGGCCCGTGGGCTAGG
Run BLAST on NCBI

protein sequence of TCONS_00003777-protein

>TCONS_00003777-protein ID=TCONS_00003777-protein|Name=TCONS_00003777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
MRSLSIVTLFAVVCCTVTFGTVIQRKRSSSNKRIICFYANWAQYRKGRGR
FLPHQIPADLCTHITYAHLQVDLTTHELVKRQRNDEFLLKELVKLKKKNP
ALKIIISVGGWKHEYKPRFSKMVQNERTRAIFIQSVLKWIQKTEVDGLSI
DWEYPTKRGTSGPGDKHRYTLLLKELRAAFDEEERPLTLSASVSSGRKKI
DTVYEHKKFIKYLDWVNVMAYALHGAWRKFAGHHTTMTGATNVEDSLNAW
QEKGIPDEKINLGVATYGRTFTLKDPTNYGLGAPVTNPAHGKPGKYTRIK
GALSYYEFCDQQWDHKIPSYDSKARKPYASRGDQWIGYESPRSIRSSIAY
LMQKNNNRLGGIAIWKLGYDDFTGTFCHEGKFPLVNAARQGVYGIA
Run BLAST on NCBI

transcript from alignment at sc0000031:72193..77837-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003777 ID=TCONS_00003777|Name=TCONS_00003777|organism=Clytia hemisphaerica|type=transcript|length=5645bp|location=Sequence derived from alignment at sc0000031:72193..77837- (Clytia hemisphaerica)
GTTTTTCATTTGTCTCGATCAACTGAGGACGTTCAGCACTTACCGTCCTC
AATTTTTGCAGGTCAGAATTGCGGGCTATTCCAAATCACTTTAGTTACCC
CGCTGTCCTAAAAAGTAACAAATAACACATTTTTCTCCGGGTTTTTTTTT
TCATTCGTCTCGATCAACTCAGGACGTTCAGCACTTACCGTCCTCAATTT
TTGCAGGTTAGAATTGCGGGTTATTCCAAATCACTTTAGTTACCACGCTG
TCCTAAAAAGTATCAAATGAAATTTTTTTCACCAAGAACAGCTTCTTTTG
TTAATTTCCTCCTTGAAATTTTTGCATTCCCAACAGGTGTATAGTAGCAA
TAGTACACCTATGTCAAAAATGGTTGTTTGGTGCAAGGTAGATCATATTA
TGTCTGTGCTAAAATCCTATAAATTTGCAAAGGAAGTTGTGATTTTCTTT
AGAGAGCTTTTTGGAAGCGGTTATAGGAGGTTTTGGAGAAGTATAGAGTA
ACACCTTTATCACTGACATGGTGAAACTTTTGAAACTATTGAGGATAAAA
TAAATAACATGTAATTATTTAGGGTCTTTCTTTAAAGGAGTTTTGCAATG
TCACAAGGCGCTGACAAAGTACTATCGGAATGAAGTAATTGCTAGTTCCG
CGACAAGTAACCACGACAAGTAGAGTCTGTTACAAAGTACATGACGGATG
GACAAATTGACTTTTCATACAAACACCCCTTTTTAACAGTCCCGGTGGAA
ATTTTTTTCTCAGTGGGGATAGAAATTCCTATTGAAATCCCAATGACTCT
AGTAATTCTATTGCCAAATTTTTAGATGGGATGGGGTTTGCGGTGGGTCT
GTGACGCAGGCGTGTATACAATTATTTCAGGTGTTTTATCAACTATGGGA
GCAAATAGGTTTGTCATAACAAGCAGAAAAATGACACTAATTCTGAACCT
CTTTTTTTTTAAAGGATAGAGTAGCAACCAAAGAGGAACACAAACATCTG
CAACAATCGACCAATCATGAGATCATTATCAATTGTTACACTCTTTGCTG
TAGTGTGCTGCACTGTAACCTTTGGAACAGTTATCCAACGCAAACGATCA
TCATCTAACAAGAGGATTATATGTTTCTACGCAAACTGGGCTCAATACAG
AAAAGGGCGTGGCAGGTGAGAAAGATTATTAGTTATGCTTCAGCAAAAAG
TACTCACACCTTTTCAAGGTCGTTCTCAAATTCAAACTTTACCTTTGACA
TTACAAAAAGCATAATTTGTAAACATCAAAGAAACTGAAAAAAAACTTCA
CCGTTATTCTCCGCGAAAATTTACGGTGATAAGCTGCAATCTATTGGAAA
AATTTCAACATTTTATCATAGGTCCAATTTTTAAGCTCTCACGATCTTGG
CTCTCACATGCGATAGTTTCCAGATAGAGTGTCTCCGAGTGACCTCCATT
ATTTCCAATATTAGTGTCTTGCATATCTTGCTTAGCAATAAAGCCCGTTA
TCGTTAAAGTGCAGGCCCCTTTTTGAATTTTTGACTGGATTCAAACAGTC
GATGATTCTTGCTCGACTGCAATTCCGTAATATTCACGGAAAATTAGAGA
AAATATATGAAAAGCAACGCCCTCTAAAGAAAAACGAGGTATATGATATC
CCTGGTAAAAATTCTTGATAAGATCTGAAAAGATCGTTAAAGATCTTTAA
AGATCTTTAACAAGTAAGAATCTTAAGAGATCTTTGTAAGATCTTANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAATAGGGTATATAGGGTAGAATTATTATTCTACAAAATATGTAGATTT
CATATTTCTACAGACATCTGTAGAATTACGGCAAATTAGTAGATTGCTAC
ACAACCGAGTCTATATTGTATACACCACAATGAGTAATTTAGTGCTGACA
AGTAAGGCCGAAGAATACAATGAGGTGGAGTATAATACCGGATAAATAAC
GATCTAGACAGTTAGCCTAACTCGTCAGTTAGACTGATTTGAAGTTAAAA
AATCTCATGTGTATCTGTTTTGAGATCTTGTAATTGTCAAANTAAAATTT
AGGTTTCTTATTAAGTTCTTAAGAAGAATCTTATGAAATCTTATGAAATC
TTGCAACCATAAAATAGTTTAAGATTCTTAGCGTTTCTTTTCAAGTTCTT
ATAAAGAGACTTTCCAAATCTTAATTGACAAATATGCAAAGAAACTTTAA
GATTCTTAGCGTTTCGGGAGCGTTTCTTATCAAGTTCTTATAAAGAGACT
TTCCAAATCTTAATTGACAAATATGCAAAGAAACTTTAAGATTCTTAGTG
TTTCTTATAAAGTTCGGGTTAAGANTGGCAGGTGAGAAAGATCTTAGATT
CCTGATTATTAGTTATGTTCTCACACCTTTTCAAGGTCTTGTTCAAATTC
AAACGATGCCTTTGACACTACAAAAGGCATAATTTGTAAACATTAAAGAA
ATTGAAAAAAACTTCACCGTTACTCTCCGCGAAAATTTACGGTGATAAGC
TGCAATCTATTGGAAAAATTTCAACATTTTATCATAGGTCCAATTTTTAA
GGTCTCACAATCTTGGCTCTCACATGCGATAGTTTTCTGATAGTGTCTCC
GAGTGACCCTCAATTATTTCCAATATTAGGGCCTTGTATATCTTGCTTAG
CAATAAAGCCCCATTTCGCTAAACTGCAGTACCCTTTTTGAATTTTTGAC
TGGATTCAAACAGTCGATGATTCTTGCTCGACTACAATTCCGTAATATTC
ACGGAAAATTAGAGAAAACATATGAAAAGGAACGCCCTCTAAAGAAAAAC
GAGGTATGTGATATATTCTCAGACTATGGAAGACACTTATTCTGTGTTTT
AGATTTCTTCCACACCAAATTCCAGCCGACCTATGCACGCATATCACCTA
CGCTCATCTTCAAGTTGACCTCACAACTCACGAGTTGGTCAAAAGACAAC
GAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAACTTAAGAAGAAAAAT
CCAGCTTTGAAAATTATCATTTCAGTCGGTGAGTTCTTCTTCAGAGCTTT
GTTTTGGTGACCCAATGAAGATCTTCTAAAAGTCTTAAGAGCATAAGACT
TCCGTAGCCAACAAAATACTAAGAACAAGTATTATCTTAAGGCATTATGT
CCATAAAAACACTCACAAAATGGTAAAGTTAAGGACATTTTAAGAACAAT
TGAGAAATCTGAAGAATTCAAAACGACTTACCTCATCGTTGTTTTCAAAA
TCAGACGCGACCTTTCACCAAAAAAACATTACTCCTTCAGTACTGTGAGA
AAACTGAAATTCAAGGATTGTGTCAGCTTCAAACGCAATTTTCTCGGCGG
TCAATCTTTGATCAGTGGTCAATTAAGGATCGATATTCGATCTTCCTCTT
TTCGACATTTTGACGCACCACCCACCCAGTAAACCAAGTACCCCTGGCTC
TTAAGTTATTTTTTATAACATTTTTATTTACGATTTCAGGTGGCTGGAAA
CATGAATATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAAAGAACACG
TGCTATTTTCATCCAATCAGTGCTCAAATGGATTCAAAAAACAGAAGTGG
ATGGTCTGTCGATCGATTGGGAGTACCCTACGAAGCGAGGTACTTCCGGC
CCTGGAGATAAGCATAGGTACACATTGCTGTTAAAGGAGCTTAGAGCTGC
CTTTGATGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGTGTCCTCAG
GCCGCAAGAAAATCGACACAGTTTACGAGCACAAGAAGTTTATCAAGTAT
TTAGACTGGGTCAATGTGATGGCATATGCTTTACATGGAGCTTGGAGAAA
ATTCGCTGGTCATCACACAACAATGACTGGAGCAACCAATGTTGAAGATA
GCCTAAACGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAATCAATCTC
GGCGTTGCAACCTATGGTCGTACGTTCACACTTAAAGATCCTACCAACTA
TGGTCTAGGAGCGCCAGTCACAAACCCTGCTCACGGAAAACCAGGAAAAT
ATACCAGAATCAAAGGAGCTTTATCCTACTACGAGTTTTGTGATCAGCAA
TGGGACCATAAAATTCCCTCATACGACAGCAAAGCCCGAAAACCTTACGC
CTCAAGAGGTGATCAATGGATTGGCTATGAATCACCAAGAAGCATTCGAT
CGTCCATTGCCTACTTGATGCAGAAGAACAACAACCGATTGGGTGGGATC
GCTATTTGGAAATTGGGATATGATGACTTCACTGGTACTTTTTGTCATGA
AGGCAAATTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTATGGTATAG
CATAAAAACATTGAGATGAATCTTATATTATTTATTCATTCATTGTATTT
TTGATCGGGATAATTTTAAGCAAATTTAGTGTATTTAGAGATCTAATTGT
TTTATTTTCTTTAATACCTAGAAAGGTTTTCCCGTCTGACTTTATCTAGT
GTGTTTCCATTGTTAATTTTCTGAGCTTGTCTTGTTCTGGTCATGCTTTT
AGAAGCTTCCGATCACGTCTGAACACATCAAATGAGTATACGAATCAATG
ATCGAGTCTTTACTGGCCTTGAGAGATTTTAGGTTGATATTGTTATGTTT
TTGTAGACTTTAGACGATCCATTAACGTGACAAGAAGAGATGAATGTATA
AAATGATAAATAAAATTTGAGTTTACGAATTAGAAAATAAAGTCATTGTT
GTGTAATGATCGACGAATTTCTTCCCTTCTTCGTCTCATCTTACAGACAT
TCCTTTTGCAATTGATATGTAAAGTATTTTGATTTTGTGGTAGAATATGA
TTTCCATTTGAATAAAATATTTGAGACTTTAAAACTATTTTTGGTAAATT
TCAGAAATATTATATTTTTATCAAAATTAAGAATATATTATTATTTCTAT
GTATTACGGCATATTTATGTAATTTCAAAATTTACAGATTTCAAAATAAG
ATAAAAAATGAAATTGATGAAATATTATTTTTTTAAACCTTTTTACCTAA
TATGTACCTTATCTGCACGATTTTAAACATAACTTAAACATTGGAAATAA
ATAAGTGACATAAATTAAATATACAAAACTTGATTAAATATGATAAATAT
TTTGCCGAATTTTTGTAACAAACGGTCGTTTCTTTCAATCCATTGACACA
CTAACTTTTTGAGTGCAGTGAAAAAGACTAGGGAAATTGTCATCTTTTTT
TATTCTTTTCAAATTTTTCGCTTTCAAAATTTATTTTAAAGCACTAACAT
AATTAAATATATTCTTAAATTCCATCTGAAACTATAATAAATACATGGAG
ATACCTCCAATGTTGAAAAGAATTGGTATATTTATCATATTTTTCTGTTT
AATTGTCTCCAAAAAGGGACTGGATCTAGTGGTATTGATTTGCTACAACC
TCAAGCCATTGGATGGAGACAGTCAAATTTTACACTGGGCCACGTATCAG
CACCATCCAGTCTACCACAAAGCTTTAAGTGGCCCGTGGGCTAGG

Coding sequence (CDS) from alignment at sc0000031:72193..77837-

>TCONS_00003777 ID=TCONS_00003777|Name=TCONS_00003777|organism=Clytia hemisphaerica|type=CDS|length=3573bp|location=Sequence derived from alignment at sc0000031:72193..77837- (Clytia hemisphaerica)
GTGGCTGGAAACATGAATATAAGCCACGTTTCTCCAAAATGGTCCAAAAT
GAAAGAACACGTGCTATTTTCATCCAATCAGTGCTCAAATGGATTCAAAA
AACAGAAGTGGATGGTCTGTCGATCGATTGGGAGTACCCTACGAAGCGAG
GTACTTCCGGCCCTGGAGATAAGCATAGGTACACATTGCTGTTAAAGGAG
CTTAGAGCTGCCTTTGATGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTC
TGTGTCCTCAGGCCGCAAGAAAATCGACACAGTTTACGAGCACAAGAAGT
TTATCAAGTATTTAGACTGGGTCAATGTGATGGCATATGCTTTACATGGA
GCTTGGAGAAAATTCGCTGGTCATCACACAACAATGACTGGAGCAACCAA
TGTTGAAGATAGCCTAAACGCTTGGCAAGAAAAAGGAATCCCAGATGAGA
AAATCAATCTCGGCGTTGCAACCTATGGTCGTACGTTCACACTTAAAGAT
CCTACCAACTATGGTCTAGGAGCGCCAGTCACAAACCCTGCTCACGGAAA
ACCAGGAAAATATACCAGAATCAAAGGAGCTTTATCCTACTACGAGTTTT
GTGATCAGCAATGGGACCATAAAATTCCCTCATACGACAGCAAAGCCCGA
AAACCTTACGCCTCAAGAGGTGATCAATGGATTGGCTATGAATCACCAAG
AAGCATTCGATCGTCCATTGCCTACTTGATGCAGAAGAACAACAACCGAT
TGGGTGGGATCGCTATTTGGAAATTGGGATATGATGACTTCACTGGTACT
TTTTGTCATGAAGGCAAATTTCCACTCGTCAATGCAGCCCGGCAAGGAGT
TTATGGTATAGCATAAATTTCTTCCACACCAAATTCCAGCCGACCTATGC
ACGCATATCACCTACGCTCATCTTCAAGTTGACCTCACAACTCACGAGTT
GGTCAAAAGACAACGAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAAC
TTAAGAAGAAAAATCCAGCTTTGAAAATTATCATTTCAGTCGATGAGATC
ATTATCAATTGTTACACTCTTTGCTGTAGTGTGCTGCACTGTAACCTTTG
GAACAGTTATCCAACGCAAACGATCATCATCTAACAAGAGGATTATATGT
TTCTACGCAAACTGGGCTCAATACAGAAAAGGGCGTGGCAGGTGGCTGGA
AACATGAATATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAAAGAACA
CGTGCTATTTTCATCCAATCAGTGCTCAAATGGATTCAAAAAACAGAAGT
GGATGGTCTGTCGATCGATTGGGAGTACCCTACGAAGCGAGGTACTTCCG
GCCCTGGAGATAAGCATAGGTACACATTGCTGTTAAAGGAGCTTAGAGCT
GCCTTTGATGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGTGTCCTC
AGGCCGCAAGAAAATCGACACAGTTTACGAGCACAAGAAGTTTATCAAGT
ATTTAGACTGGGTCAATGTGATGGCATATGCTTTACATGGAGCTTGGAGA
AAATTCGCTGGTCATCACACAACAATGACTGGAGCAACCAATGTTGAAGA
TAGCCTAAACGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAATCAATC
TCGGCGTTGCAACCTATGGTCGTACGTTCACACTTAAAGATCCTACCAAC
TATGGTCTAGGAGCGCCAGTCACAAACCCTGCTCACGGAAAACCAGGAAA
ATATACCAGAATCAAAGGAGCTTTATCCTACTACGAGTTTTGTGATCAGC
AATGGGACCATAAAATTCCCTCATACGACAGCAAAGCCCGAAAACCTTAC
GCCTCAAGAGGTGATCAATGGATTGGCTATGAATCACCAAGAAGCATTCG
ATCGTCCATTGCCTACTTGATGCAGAAGAACAACAACCGATTGGGTGGGA
TCGCTATTTGGAAATTGGGATATGATGACTTCACTGGTACTTTTTGTCAT
GAAGGCAAATTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTATGGTAT
AGCATAAATTTCTTCCACACCAAATTCCAGCCGACCTATGCACGCATATC
ACCTACGCTCATCTTCAAGTTGACCTCACAACTCACGAGTTGGTCAAAAG
ACAACGAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAACTTAAGAAGA
AAAATCCAGCTTTGAAAATTATCATTTCAGTCGATGAGATCATTATCAAT
TGTTACACTCTTTGCTGTAGTGTGCTGCACTGTAACCTTTGGAACAGTTA
TCCAACGCAAACGATCATCATCTAACAAGAGGATTATATGTTTCTACGCA
AACTGGGCTCAATACAGAAAAGGGCGTGGCAGGTGGCTGGAAACATGAAT
ATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAAAGAACACGTGCTATT
TTCATCCAATCAGTGCTCAAATGGATTCAAAAAACAGAAGTGGATGGTCT
GTCGATCGATTGGGAGTACCCTACGAAGCGAGGTACTTCCGGCCCTGGAG
ATAAGCATAGGTACACATTGCTGTTAAAGGAGCTTAGAGCTGCCTTTGAT
GAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGTGTCCTCAGGCCGCAA
GAAAATCGACACAGTTTACGAGCACAAGAAGTTTATCAAGTATTTAGACT
GGGTCAATGTGATGGCATATGCTTTACATGGAGCTTGGAGAAAATTCGCT
GGTCATCACACAACAATGACTGGAGCAACCAATGTTGAAGATAGCCTAAA
CGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAATCAATCTCGGCGTTG
CAACCTATGGTCGTACGTTCACACTTAAAGATCCTACCAACTATGGTCTA
GGAGCGCCAGTCACAAACCCTGCTCACGGAAAACCAGGAAAATATACCAG
AATCAAAGGAGCTTTATCCTACTACGAGTTTTGTGATCAGCAATGGGACC
ATAAAATTCCCTCATACGACAGCAAAGCCCGAAAACCTTACGCCTCAAGA
GGTGATCAATGGATTGGCTATGAATCACCAAGAAGCATTCGATCGTCCAT
TGCCTACTTGATGCAGAAGAACAACAACCGATTGGGTGGGATCGCTATTT
GGAAATTGGGATATGATGACTTCACTGGTACTTTTTGTCATGAAGGCAAA
TTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTATGGTATAGCATAAAT
TTCTTCCACACCAAATTCCAGCCGACCTATGCACGCATATCACCTACGCT
CATCTTCAAGTTGACCTCACAACTCACGAGTTGGTCAAAAGACAACGAAA
TGACGAATTTCTGTTGAAAGAGTTGGTTAAACTTAAGAAGAAAAATCCAG
CTTTGAAAATTATCATTTCAGTCGATGAGATCATTATCAATTGTTACACT
CTTTGCTGTAGTGTGCTGCACTGTAACCTTTGGAACAGTTATCCAACGCA
AACGATCATCATCTAACAAGAGGATTATATGTTTCTACGCAAACTGGGCT
CAATACAGAAAAGGGCGTGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002105XLOC_002105Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003777-proteinTCONS_00003777-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003777-exon-sc0000031-1575043694:77777..77837TCONS_00003777-exon-sc0000031-1575043694:77777..77837Clytia hemisphaericaexon
TCONS_00003777-exon-sc0000031-1575043694:76673..76868TCONS_00003777-exon-sc0000031-1575043694:76673..76868Clytia hemisphaericaexon
TCONS_00003777-exon-sc0000031-1575043694:74710..74885TCONS_00003777-exon-sc0000031-1575043694:74710..74885Clytia hemisphaericaexon
TCONS_00003777-exon-sc0000031-1575043694:72193..74248TCONS_00003777-exon-sc0000031-1575043694:72193..74248Clytia hemisphaericaexon
TCONS_00003777-exon-sc0000031-1510915933:77777..77837TCONS_00003777-exon-sc0000031-1510915933:77777..77837Clytia hemisphaericaexon
TCONS_00003777-exon-sc0000031-1510915933:76673..76868TCONS_00003777-exon-sc0000031-1510915933:76673..76868Clytia hemisphaericaexon
TCONS_00003777-exon-sc0000031-1510915933:74710..74885TCONS_00003777-exon-sc0000031-1510915933:74710..74885Clytia hemisphaericaexon
TCONS_00003777-exon-sc0000031-1510915933:72193..74248TCONS_00003777-exon-sc0000031-1510915933:72193..74248Clytia hemisphaericaexon
TCONS_00003777-exon-sc0000031-1491911889:77777..77837TCONS_00003777-exon-sc0000031-1491911889:77777..77837Clytia hemisphaericaexon
TCONS_00003777-exon-sc0000031-1491911889:76673..76868TCONS_00003777-exon-sc0000031-1491911889:76673..76868Clytia hemisphaericaexon
TCONS_00003777-exon-sc0000031-1491911889:74710..74885TCONS_00003777-exon-sc0000031-1491911889:74710..74885Clytia hemisphaericaexon
TCONS_00003777-exon-sc0000031-1491911889:72193..74248TCONS_00003777-exon-sc0000031-1491911889:72193..74248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:72193..77837 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	2.7512e-08	4.28349e-08	1.55144e-08	1.94507e-09	0	0	9.59914e-09	0	0.938406	0.28087	0.62792	0	1.83002	1.20068e-08	0.52518	0	0	4.7994e-08	6.89271e-10	5.09312e-05	0.000665313	6.4646e-08	0	4.45902e-07	3.97916e-06
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011583Chitinase_II
IPR001223Glyco_hydro18_cat
IPR017853Glycoside_hydrolase_SF
IPR029070Chitinase_insertion
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0008061 chitin binding
Blast
[Close]
BLAST of TCONS_00003777 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.480e-82
Identity = 144/375 (38.40%), Postives = 218/375 (58.13%), Query Frame = 1 
Query:  196 SNKRIICFYANWAQYRKGRGRFLPHQIPADLCTHITYAHLQVDLTTHELVKRQRNDEFXXXXXXXXXXXNPALKIIISVGGWKHEYKPRFSKMVQNERTRAIFIQSVLKWIQKTEVDGLSIDWEYPTKRGTSGPGDKHRYTLLLKELRAAFDEEERP-----LTLSASVSSGRKKIDTVYEHKKFIKYLDWVNVMAYALHGAWRKFAGHHTTM------TGAT---NVEDSLNAWQEKGIPDEKINLGVATYGRTFTLKDPTNYGLGAPVTNPAHGKPGKYTRIKGALSYYEFCDQQWDHKIPSYDSKARKPYASRGDQWIGYESPRSIRSSIAYLMQKNNNRLGGIAIWKLGYDDFTGTFCHEGKFPLVNAARQ 1278
            S  +++C++ NWAQYR+G  RFLP  +   LCTH+ YA     +T H+L   + NDE L +E   LKK NP LK ++++GGW    + +F+ MV     R  F+ S +++++K   DGL +DWEYP  +G+    DK R+T L+++L  AF +E +      L LSA+V +G+  +D  YE  K  + LD+VN+MAY  HG+W K  GH++ +      +GA    NV+ ++  W +KG P  K+ LG+ TYGR+FTL   ++  +GAP T    G PG +T+  G L+YYE C   W           + PY  R +QW+G++   S ++ ++YL QK    LGG  +W L  DDF G  C++G++PL+   RQ
Sbjct:   20 SAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAV-DKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPAT--GSGTPGPFTKEGGMLAYYEVCS--WKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKG---LGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 383
The following BLAST results are available for this feature:
BLAST of TCONS_00003777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHIT19.480e-8238.40Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV... [more]
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