TCONS_00003774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003774
Unique NameTCONS_00003774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2646

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003774 ID=TCONS_00003774|Name=TCONS_00003774|organism=Clytia hemisphaerica|type=transcript|length=2646bp
CAATAGTACACCTATGTCAAAAATGGTTGTTTGGTGCAAGGTAGATCATA
TTATGTCTGTGCTAAAATCCTATAAATTTGCAAAGGAAGTTGTGATTTTC
TTTAGAGAGCTTTTTGGAAGCGGTTATAGGAGGTTTTGGAGAAGTATAGA
GTAACACCTTTATCACTGACATggtgaaacttttgaaactatTGAGGATA
AAATAAATAACATgataGAGTAGCAACCAAAGAGGAACACAAACATCTGC
AACAATCGACCAATCATGAGATCATTATCAATTGTTACACTCTTTGCTGT
AGTGTGCTGCACTGTAACCTTTGGAACAGTTATCCAACGCAAACGATCAT
CATCTAACAAGAGGATTATATGTTTCTACGCAAACTGGGCTCAATACAGA
AAAGGGCGTGGCAGATTTCTTCCACACCAAATTCCAGCCGACCTATGCAC
GCATATCACCTACGCTCATCTTCAAGTTGACCTCACAACTCACGAGTTGG
TCAAAAGACAACGAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAACTT
AAGAAGAAAAATCCAGCtttgaaaattatcatttcagTCGGTGGCTGGAA
ACATGAATATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAAAGAACAC
GTGCTATTTTCATCCAATCAGTGCTCAAATGGATTCAAAAAACAGAAGTG
GATGGTCTGTCGATCGATTGGGAGTACCCTACGAAGCGAGGTACTTCCGG
CCCTGGAGATAAGCATAGGTACACATTGCTGTTAAAGGAGCTTAGAGCTG
CCTTTGATGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGTGTCCTCA
GGCCGCAAGAAAATCGACACAGTTTACGAGCACAAGAAGTTTATCAAGTA
TTTAGACTGGGTCAATGTGATGGCATATGCTTTACATGGAGCTTGGAGAA
AATTCGCTGGTCATCACACAACAATGACTGGAGCAACCAATGTTGAAGAT
AGCCTAAACGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAATCAATCT
CGGCGTTGCAACCTATGGTCGTACGTTCACACTTAAAGATCCTACCAACT
ATGGTCTAGGAGCGCCAGTCACAAACCCTGCTCACGGAAAACCAGGAAAA
TATACCAGAATCAAAGGAGCTTTATCCTACTACGAGTTTTGTGATCAGCA
ATGGGACCATAAAATTCCCTCATACGACAGCAAAGCCCGAAAACCTTACG
CCTCAAGAGGTGATCAATGGATTGGCTATGAATCACCAAGAAGCATTCGA
TCGTCCATTGCCTACTTGATGCAGAAGAACAACAACCGATTGGGTGGGAT
CGCTATTTGGAAATTGGGATATGATGACTTCACTGGTACTTTTTGTCATG
AAGGCAAATTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTATGGTATA
GCATAAAAACATTGAGATGAATCTTAtattatttattcattcattgtaTT
TTTGATCGGGataattttaagcaaatttaGTGTATTTAGAGATctaattg
ttttattttctttaatacCTAGAAAGGTTTTCCCGTCTGACTTTATCTAG
TGTGTTTCCATTGTTAATTTTCTGAGCTTGTCTTGTTCTGGTCATGCTTT
TAGAAGCTTCCGATCACGTCTGAACACATCAAATGAGTATACGAATCAAT
GATCGAGTCTTTACTGGCCTTGAGAGATTTTAGGTTGATATTGTTATGTT
TTTGTAGACTTTAGACGATCCATTAACGTGACAAGAAGAGATGAAtgtat
aaaatgataaataaaatttgagtttacgaattagaaaataaagtCATTGT
TGTGTAATGATCGACGAATTTCTTCCCTTCTTCGTCTCATCTTACAGACA
TTCCTTTTGCAATTGATATGTAAAGTATTTTGATTTTGTGGTAGAATATG
ATTTCCAtttgaataaaatatttgagactttaaaactatttttggtaaat
ttcagaaatattatatttttatcaaaattaagaatatatTATTATTTCTA
TGTATTACGGCATATTTatgtaatttcaaaatttacagatttcaaaataa
gataaaaaatgaaattgatgaaatattatttttttaaacctttttacCTA
ATATGTACCTTATCTGCACGATTTTAAACATAACTTAAACATTGGAAATA
AATAAGTGACATAAATTAAATATACAAAACTTGATTAAATATGATAAATA
TTTTGCCGAATTTTTGTAACAAACGGTCGTTTCTTTCAATCCATTGACAC
ACTAACTTTTTGAGTGCAGTGAAAAAGACTAGGGAAATTGtcatcttttt
ttattcttttcaaatttttcgctttcaaaatttattttaaagcaCTAACA
TAATTAAATATATTCTTAAATTCCATCTGAAACTATAATAAATACATGGA
GATACCTCCAATGTTGAAAAGAATTGGTatatttatcatatttttctgtt
taattgtctccaaaaagggactggatctagtggtatTGATTTGCTACAAC
CTCAAGCCATTGGATGGAGACAGTCAAATTTTACACTGGGCCACGTATCA
GCACCATCCAGTCTACCACAAAGCTTTAAGTGGCCCGTGGGCTAGG
Run BLAST on NCBI

transcript from alignment at sc0000031:72193..77490-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003774 ID=TCONS_00003774|Name=TCONS_00003774|organism=Clytia hemisphaerica|type=transcript|length=5298bp|location=Sequence derived from alignment at sc0000031:72193..77490- (Clytia hemisphaerica)
CAATAGTACACCTATGTCAAAAATGGTTGTTTGGTGCAAGGTAGATCATA
TTATGTCTGTGCTAAAATCCTATAAATTTGCAAAGGAAGTTGTGATTTTC
TTTAGAGAGCTTTTTGGAAGCGGTTATAGGAGGTTTTGGAGAAGTATAGA
GTAACACCTTTATCACTGACATGGTGAAACTTTTGAAACTATTGAGGATA
AAATAAATAACATGTAATTATTTAGGGTCTTTCTTTAAAGGAGTTTTGCA
ATGTCACAAGGCGCTGACAAAGTACTATCGGAATGAAGTAATTGCTAGTT
CCGCGACAAGTAACCACGACAAGTAGAGTCTGTTACAAAGTACATGACGG
ATGGACAAATTGACTTTTCATACAAACACCCCTTTTTAACAGTCCCGGTG
GAAATTTTTTTCTCAGTGGGGATAGAAATTCCTATTGAAATCCCAATGAC
TCTAGTAATTCTATTGCCAAATTTTTAGATGGGATGGGGTTTGCGGTGGG
TCTGTGACGCAGGCGTGTATACAATTATTTCAGGTGTTTTATCAACTATG
GGAGCAAATAGGTTTGTCATAACAAGCAGAAAAATGACACTAATTCTGAA
CCTCTTTTTTTTTAAAGGATAGAGTAGCAACCAAAGAGGAACACAAACAT
CTGCAACAATCGACCAATCATGAGATCATTATCAATTGTTACACTCTTTG
CTGTAGTGTGCTGCACTGTAACCTTTGGAACAGTTATCCAACGCAAACGA
TCATCATCTAACAAGAGGATTATATGTTTCTACGCAAACTGGGCTCAATA
CAGAAAAGGGCGTGGCAGGTGAGAAAGATTATTAGTTATGCTTCAGCAAA
AAGTACTCACACCTTTTCAAGGTCGTTCTCAAATTCAAACTTTACCTTTG
ACATTACAAAAAGCATAATTTGTAAACATCAAAGAAACTGAAAAAAAACT
TCACCGTTATTCTCCGCGAAAATTTACGGTGATAAGCTGCAATCTATTGG
AAAAATTTCAACATTTTATCATAGGTCCAATTTTTAAGCTCTCACGATCT
TGGCTCTCACATGCGATAGTTTCCAGATAGAGTGTCTCCGAGTGACCTCC
ATTATTTCCAATATTAGTGTCTTGCATATCTTGCTTAGCAATAAAGCCCG
TTATCGTTAAAGTGCAGGCCCCTTTTTGAATTTTTGACTGGATTCAAACA
GTCGATGATTCTTGCTCGACTGCAATTCCGTAATATTCACGGAAAATTAG
AGAAAATATATGAAAAGCAACGCCCTCTAAAGAAAAACGAGGTATATGAT
ATCCCTGGTAAAAATTCTTGATAAGATCTGAAAAGATCGTTAAAGATCTT
TAAAGATCTTTAACAAGTAAGAATCTTAAGAGATCTTTGTAAGATCTTAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAATAGGGTATATAGGGTAGAATTATTATTCTACAAAATATGTAGA
TTTCATATTTCTACAGACATCTGTAGAATTACGGCAAATTAGTAGATTGC
TACACAACCGAGTCTATATTGTATACACCACAATGAGTAATTTAGTGCTG
ACAAGTAAGGCCGAAGAATACAATGAGGTGGAGTATAATACCGGATAAAT
AACGATCTAGACAGTTAGCCTAACTCGTCAGTTAGACTGATTTGAAGTTA
AAAAATCTCATGTGTATCTGTTTTGAGATCTTGTAATTGTCAAANTAAAA
TTTAGGTTTCTTATTAAGTTCTTAAGAAGAATCTTATGAAATCTTATGAA
ATCTTGCAACCATAAAATAGTTTAAGATTCTTAGCGTTTCTTTTCAAGTT
CTTATAAAGAGACTTTCCAAATCTTAATTGACAAATATGCAAAGAAACTT
TAAGATTCTTAGCGTTTCGGGAGCGTTTCTTATCAAGTTCTTATAAAGAG
ACTTTCCAAATCTTAATTGACAAATATGCAAAGAAACTTTAAGATTCTTA
GTGTTTCTTATAAAGTTCGGGTTAAGANTGGCAGGTGAGAAAGATCTTAG
ATTCCTGATTATTAGTTATGTTCTCACACCTTTTCAAGGTCTTGTTCAAA
TTCAAACGATGCCTTTGACACTACAAAAGGCATAATTTGTAAACATTAAA
GAAATTGAAAAAAACTTCACCGTTACTCTCCGCGAAAATTTACGGTGATA
AGCTGCAATCTATTGGAAAAATTTCAACATTTTATCATAGGTCCAATTTT
TAAGGTCTCACAATCTTGGCTCTCACATGCGATAGTTTTCTGATAGTGTC
TCCGAGTGACCCTCAATTATTTCCAATATTAGGGCCTTGTATATCTTGCT
TAGCAATAAAGCCCCATTTCGCTAAACTGCAGTACCCTTTTTGAATTTTT
GACTGGATTCAAACAGTCGATGATTCTTGCTCGACTACAATTCCGTAATA
TTCACGGAAAATTAGAGAAAACATATGAAAAGGAACGCCCTCTAAAGAAA
AACGAGGTATGTGATATATTCTCAGACTATGGAAGACACTTATTCTGTGT
TTTAGATTTCTTCCACACCAAATTCCAGCCGACCTATGCACGCATATCAC
CTACGCTCATCTTCAAGTTGACCTCACAACTCACGAGTTGGTCAAAAGAC
AACGAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAACTTAAGAAGAAA
AATCCAGCTTTGAAAATTATCATTTCAGTCGGTGAGTTCTTCTTCAGAGC
TTTGTTTTGGTGACCCAATGAAGATCTTCTAAAAGTCTTAAGAGCATAAG
ACTTCCGTAGCCAACAAAATACTAAGAACAAGTATTATCTTAAGGCATTA
TGTCCATAAAAACACTCACAAAATGGTAAAGTTAAGGACATTTTAAGAAC
AATTGAGAAATCTGAAGAATTCAAAACGACTTACCTCATCGTTGTTTTCA
AAATCAGACGCGACCTTTCACCAAAAAAACATTACTCCTTCAGTACTGTG
AGAAAACTGAAATTCAAGGATTGTGTCAGCTTCAAACGCAATTTTCTCGG
CGGTCAATCTTTGATCAGTGGTCAATTAAGGATCGATATTCGATCTTCCT
CTTTTCGACATTTTGACGCACCACCCACCCAGTAAACCAAGTACCCCTGG
CTCTTAAGTTATTTTTTATAACATTTTTATTTACGATTTCAGGTGGCTGG
AAACATGAATATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAAAGAAC
ACGTGCTATTTTCATCCAATCAGTGCTCAAATGGATTCAAAAAACAGAAG
TGGATGGTCTGTCGATCGATTGGGAGTACCCTACGAAGCGAGGTACTTCC
GGCCCTGGAGATAAGCATAGGTACACATTGCTGTTAAAGGAGCTTAGAGC
TGCCTTTGATGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGTGTCCT
CAGGCCGCAAGAAAATCGACACAGTTTACGAGCACAAGAAGTTTATCAAG
TATTTAGACTGGGTCAATGTGATGGCATATGCTTTACATGGAGCTTGGAG
AAAATTCGCTGGTCATCACACAACAATGACTGGAGCAACCAATGTTGAAG
ATAGCCTAAACGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAATCAAT
CTCGGCGTTGCAACCTATGGTCGTACGTTCACACTTAAAGATCCTACCAA
CTATGGTCTAGGAGCGCCAGTCACAAACCCTGCTCACGGAAAACCAGGAA
AATATACCAGAATCAAAGGAGCTTTATCCTACTACGAGTTTTGTGATCAG
CAATGGGACCATAAAATTCCCTCATACGACAGCAAAGCCCGAAAACCTTA
CGCCTCAAGAGGTGATCAATGGATTGGCTATGAATCACCAAGAAGCATTC
GATCGTCCATTGCCTACTTGATGCAGAAGAACAACAACCGATTGGGTGGG
ATCGCTATTTGGAAATTGGGATATGATGACTTCACTGGTACTTTTTGTCA
TGAAGGCAAATTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTATGGTA
TAGCATAAAAACATTGAGATGAATCTTATATTATTTATTCATTCATTGTA
TTTTTGATCGGGATAATTTTAAGCAAATTTAGTGTATTTAGAGATCTAAT
TGTTTTATTTTCTTTAATACCTAGAAAGGTTTTCCCGTCTGACTTTATCT
AGTGTGTTTCCATTGTTAATTTTCTGAGCTTGTCTTGTTCTGGTCATGCT
TTTAGAAGCTTCCGATCACGTCTGAACACATCAAATGAGTATACGAATCA
ATGATCGAGTCTTTACTGGCCTTGAGAGATTTTAGGTTGATATTGTTATG
TTTTTGTAGACTTTAGACGATCCATTAACGTGACAAGAAGAGATGAATGT
ATAAAATGATAAATAAAATTTGAGTTTACGAATTAGAAAATAAAGTCATT
GTTGTGTAATGATCGACGAATTTCTTCCCTTCTTCGTCTCATCTTACAGA
CATTCCTTTTGCAATTGATATGTAAAGTATTTTGATTTTGTGGTAGAATA
TGATTTCCATTTGAATAAAATATTTGAGACTTTAAAACTATTTTTGGTAA
ATTTCAGAAATATTATATTTTTATCAAAATTAAGAATATATTATTATTTC
TATGTATTACGGCATATTTATGTAATTTCAAAATTTACAGATTTCAAAAT
AAGATAAAAAATGAAATTGATGAAATATTATTTTTTTAAACCTTTTTACC
TAATATGTACCTTATCTGCACGATTTTAAACATAACTTAAACATTGGAAA
TAAATAAGTGACATAAATTAAATATACAAAACTTGATTAAATATGATAAA
TATTTTGCCGAATTTTTGTAACAAACGGTCGTTTCTTTCAATCCATTGAC
ACACTAACTTTTTGAGTGCAGTGAAAAAGACTAGGGAAATTGTCATCTTT
TTTTATTCTTTTCAAATTTTTCGCTTTCAAAATTTATTTTAAAGCACTAA
CATAATTAAATATATTCTTAAATTCCATCTGAAACTATAATAAATACATG
GAGATACCTCCAATGTTGAAAAGAATTGGTATATTTATCATATTTTTCTG
TTTAATTGTCTCCAAAAAGGGACTGGATCTAGTGGTATTGATTTGCTACA
ACCTCAAGCCATTGGATGGAGACAGTCAAATTTTACACTGGGCCACGTAT
CAGCACCATCCAGTCTACCACAAAGCTTTAAGTGGCCCGTGGGCTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002105XLOC_002105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003774-exon-sc0000031-1575043694:77278..77490TCONS_00003774-exon-sc0000031-1575043694:77278..77490Clytia hemisphaericaexon
TCONS_00003774-exon-sc0000031-1575043694:76673..76873TCONS_00003774-exon-sc0000031-1575043694:76673..76873Clytia hemisphaericaexon
TCONS_00003774-exon-sc0000031-1575043694:74710..74885TCONS_00003774-exon-sc0000031-1575043694:74710..74885Clytia hemisphaericaexon
TCONS_00003774-exon-sc0000031-1575043694:72193..74248TCONS_00003774-exon-sc0000031-1575043694:72193..74248Clytia hemisphaericaexon
TCONS_00003774-exon-sc0000031-1510915933:77278..77490TCONS_00003774-exon-sc0000031-1510915933:77278..77490Clytia hemisphaericaexon
TCONS_00003774-exon-sc0000031-1510915933:76673..76873TCONS_00003774-exon-sc0000031-1510915933:76673..76873Clytia hemisphaericaexon
TCONS_00003774-exon-sc0000031-1510915933:74710..74885TCONS_00003774-exon-sc0000031-1510915933:74710..74885Clytia hemisphaericaexon
TCONS_00003774-exon-sc0000031-1510915933:72193..74248TCONS_00003774-exon-sc0000031-1510915933:72193..74248Clytia hemisphaericaexon
TCONS_00003774-exon-sc0000031-1491911889:77278..77490TCONS_00003774-exon-sc0000031-1491911889:77278..77490Clytia hemisphaericaexon
TCONS_00003774-exon-sc0000031-1491911889:76673..76873TCONS_00003774-exon-sc0000031-1491911889:76673..76873Clytia hemisphaericaexon
TCONS_00003774-exon-sc0000031-1491911889:74710..74885TCONS_00003774-exon-sc0000031-1491911889:74710..74885Clytia hemisphaericaexon
TCONS_00003774-exon-sc0000031-1491911889:72193..74248TCONS_00003774-exon-sc0000031-1491911889:72193..74248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:72193..77490 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.9753	0.781309	0	0.00306363	0.0295161	0.0761549	18.7403	16.1264	0.198912	1.02774	11.1161	16.9933	65.4268	52.1488	0	0	0.21636	0.0191473
Blast
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BLAST of TCONS_00003774 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 2.072e-81
Identity = 144/375 (38.40%), Postives = 218/375 (58.13%), Query Frame = 2 
Query:  353 SNKRIICFYANWAQYRKGRGRFLPHQIPADLCTHITYAHLQVDLTTHELVKRQRNDEFXXXXXXXXXXXNPALKIIISVGGWKHEYKPRFSKMVQNERTRAIFIQSVLKWIQKTEVDGLSIDWEYPTKRGTSGPGDKHRYTLLLKELRAAFDEEERP-----LTLSASVSSGRKKIDTVYEHKKFIKYLDWVNVMAYALHGAWRKFAGHHTTM------TGAT---NVEDSLNAWQEKGIPDEKINLGVATYGRTFTLKDPTNYGLGAPVTNPAHGKPGKYTRIKGALSYYEFCDQQWDHKIPSYDSKARKPYASRGDQWIGYESPRSIRSSIAYLMQKNNNRLGGIAIWKLGYDDFTGTFCHEGKFPLVNAARQ 1435
            S  +++C++ NWAQYR+G  RFLP  +   LCTH+ YA     +T H+L   + NDE L +E   LKK NP LK ++++GGW    + +F+ MV     R  F+ S +++++K   DGL +DWEYP  +G+    DK R+T L+++L  AF +E +      L LSA+V +G+  +D  YE  K  + LD+VN+MAY  HG+W K  GH++ +      +GA    NV+ ++  W +KG P  K+ LG+ TYGR+FTL   ++  +GAP T    G PG +T+  G L+YYE C   W           + PY  R +QW+G++   S ++ ++YL QK    LGG  +W L  DDF G  C++G++PL+   RQ
Sbjct:   20 SAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAV-DKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPAT--GSGTPGPFTKEGGMLAYYEVCS--WKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKG---LGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 383
The following BLAST results are available for this feature:
BLAST of TCONS_00003774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHIT12.072e-8138.40Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV... [more]
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