|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003732 ID=TCONS_00003732|Name=TCONS_00003732|organism=Clytia hemisphaerica|type=transcript|length=2906bp
TTAGCTCCTGATCTACCAAATGTCGTTCTTTCATCAAATAGCACCTCAAA
AGCCTCCTGTTATGATCCTTGTCCAACCTACTGATCTCGTTGGACGGGCT
CCACAAGCCATCATCGCGCATTCCGCACCTACCTCTATCCAACCTCGCAT
CTCCCCACCGAAAGCCGTATCTCCCATAGGGGTAAACAACTGTTCAACCT
CGAAAAAATATTCTTCGTCCACCTCCCCCTCGCCAGCATCAGCAACCACC
AAGAGGGAGCTAGCATCCTCCCCTCCAGCAGGCATCACAAATCACAGTGC
TCCTACCCCTTGTATGGTAGCAGGTGGTCTTGGAAGTGGTGTTTTCCTAC
ATTTCGACAAAAAATTATCCGATTGTGTCAAACAGTATCCTTGTCTGTAT
GACAGTAAGACTGTTGGGTATAAAGATAAAAAGACAGCAATGAAAGCTTG
GGAACTGGTTGCCAAAGAAGTCGAAGTCGAGAATGgtgAGCACGCACAGA
AATTGTATTTCAATCTGAAAAAGCGATTCCACAAACGCAGAAATTTTCTC
AAACGTCTACAAAGGTCTGGTACCAATAATCACATATTGCTAAAAAAAGC
NAAGATAAAAAGACAGCAATGAAAGCTTGGGAACTGGTTGCCAAAGAAGT
CGAAGTCGAGAATGgtgAGCACGCACAGAAATTGTATTTCAATCTGAAAA
AGCGATTCCACAAACGCAGAAATTTTCTCAAACGTCTACAAAGGTCTGGT
ACCAATAATCACATATTGCTAAAAAAAGCGCGAAGTGACGTCAGCGTATA
TGCGTTTCTTGATTGGTTGATTCCCTTCACACAAGTCAGACAGCCACGTG
TACCTATCAAGCCTGAAGAGGCGAACTTACTAGAGGCTAAATATCTAGCT
TCTGTTGAAAGTGAAGAATTTTTAGATGAAAGACCATCTTTTGTTGATCT
ACATTACAATAATTCAGCTTCTAGTGAGAGTTTTGAGCATGAAGGTGGCT
TATATGTTAAACAGGAAGCCCCGGATGATGAGGAAGCAATGTATCTTGGA
GATGAAGAGATCATTACAGTTCGTCCATCAAGTCCAATGAATTCAGCACC
AACTCCTCCGTCAAGTTTTGGTAACCATGGTAATCATAAACAGGAGGAAG
ATCTACACTCCGATGAGAACCATAATGTCCCTGAGAAGAGAATTTTGAAA
ACATCCATTGAAAACACTATTACAGCCAACAACCTAAATCACGATGAGTT
CACCAGAAAACGTACCAGAGATTCCAGTTTCACAGATCCTGCTCCATCCT
TGACTACAACTCACCCAGAGAATTTAACCAATAGTCACCACAGACACACA
CAAGAGCATATTAATAGCAAAAGATCAAAATTTACTCTAGAAAATCATGC
AGCCGATTCGAAATATTCCGACTTAGAAAATGAAGATAATCTTTTTGGTC
AAATGGTTGGAGCAGAACTTAAAGGGTTGCCTTACAAAGAAAGATGTATt
gctaaattgaaaattcaaaacatcttaTTTGATATGCAAATGACTGCATT
GAATAAAAGGAACGGTAAATCAGACAGAAGAGAAAGTCACACTATTTGAA
TTGGAGAAGAAATGCGGAGAAATCttgaattattgaaagtttaaaaagaa
gGCCTCCTATCCAGTGGTATGAGCGATTGCGTGATTGGAATCTTTTCAGG
CCGTGATGGAGTGATCAATGAAGTAAGTCCGGAGAGCTATAAGCGAATCt
tgacctttctcaagcaagaaaaagtgaagccttcaAATATGCGTGGATTG
AATCAGCGATTTCATCGTTTTCGGGtggtatttttttcgaaatttagcgg
taaattttagttttaatctggcatttgtgtaaaaactaggcGGTTTCGCG
GGTCACGGGTCTANtgtttttgaaagtttaaaaagaagGCCTCCTATCTA
GTGGTATGAGCGATTGCGTGATTGGAATCTTTTCAGGCCGTGATGGAGTG
ATCAATGAAGTAAGTCCGGAGAGCTATAAGCGAATCttgacctttctcaa
gcaagaaaaagtgaagccttcaAATATGCGTGGATTGAATCAGCGATTTC
ATCGTTTTCGGGtggtatttttttcgaaatttagcggtaaattttagttt
taatctggcatttgtgtaaaaactaggcGGTTTCGCGGGTCACGGGTCTA
CCATTACCAAGGAGATttgcttctagcccttcgggcttatacttcattag
GTGTGATCAAATCATAGACTAAAAGTGAAAATGTATTGGGTTGTAGGTTT
TTGAGTATACTTGCTGGACAAGATTTGCTGGGTATTAGACCAGCAGGTAA
CAGATTTACGGTAACGGATGATATATgtattttgtaaacaaaaggAAGCC
GTATATATTTAGTgacaaaaattgtatttttgtctGGTAACATTAATTTA
ACAGGGTATAATGGCTTTATTGAGCTGAGAACAAGGAAACCTTTCAAATA
ACTTTGATTAAGGGGGAATTAGGTGATCACATTGAAAAACTAcagcatta
tttttcttttaatgatAATGCCATCTAAACAATATTTTACAACACAGCTG
TTACTTAGAGGCAAACTTATTAATCCCGTTTGTACTGGCCGAGGGAAAat
aatgtatgtggagtaatttgttattcaatggACCGTCGTGTTTGACTAAA
GATAAATAGAGTCTGAAGCTTTACTATTAAGGAAAAAATGATTTACAAGA
GTCAGACTTCAATTTAATACACTCAgatttatctttccaatggagaaaac
tttttgattaggaaaattgtttttttgcaaaGGCGCATTTTTTATTTAGG
TTTTGTACATATCAAGAGGAAAAGTAAGAGGTATTTTTTAAACACTAACC
CAAGGG Run BLAST on NCBI protein sequence of TCONS_00003732-protein >TCONS_00003732-protein ID=TCONS_00003732-protein|Name=TCONS_00003732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MKAWELVAKEVEVENGEHAQKLYFNLKKRFHKRRNFLKRLQRSGTNNHIL
LKKARSDVSVYAFLDWLIPFTQVRQPRVPIKPEEANLLEAKYLASVESEE
FLDERPSFVDLHYNNSASSESFEHEGGLYVKQEAPDDEEAMYLGDEEIIT
VRPSSPMNSAPTPPSSFGNHGNHKQEEDLHSDENHNVPEKRILKTSIENT
ITANNLNHDEFTRKRTRDSSFTDPAPSLTTTHPENLTNSHHRHTQEHINS
KRSKFTLENHAADSKYSDLENEDNLFGQMVGAELKGLPYKERCIAKLKIQ
NILFDMQMTALNKRNGKSDRRESHTI Run BLAST on NCBI transcript from alignment at sc0000031:342608..346536+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003732 ID=TCONS_00003732|Name=TCONS_00003732|organism=Clytia hemisphaerica|type=transcript|length=3929bp|location=Sequence derived from alignment at sc0000031:342608..346536+ (Clytia hemisphaerica)
TTAGCTCCTGATCTACCAAATGTCGTTCTTTCATCAAATGTAggttattt
ggaaaattttggttATCAGTTGCACTTGCTCTACCGGGTGACCaatcaaa
accatttttaaactttgtttAAGAAGTTTTTTGTGAATCACCtttttata
caccttttcgaccgtagccgccaattgccgcgcgggcattttttgtccgt
tttaccaccctaaaaccgtcccagcctttttttcgcacctaaagacaata
ggaattatattatgctgatataagcttCTTTCTGAACAATCTTGCTCTAC
ATACGTGTCAACCCattgtgaaaaagcttgtaaattacaAGTGAtgtaag
caaacaatatcactttcatttaaaaaaaaacctttagaCAAAGAATGCAG
TGAGATTACgtaatattatttttctttacacTTTAGAGCACCTCAAAAGC
CTCCTGTTATGATCCTTGTCCAACCTACTGATCTCGTTGGACGGGCTCCA
CAAGCCATCATCGCGCATTCCGCACCTACCTCTATCCAACCTCGCATCTC
CCCACCGAAAGCCGTATCTCCCATAGGGGTAAACAACTGTTCAACCTCGA
AAAAATATTCTTCGTCCACCTCCCCCTCGCCAGCATCAGCAACCACCAAG
AGGGAGCTAGCATCCTCCCCTCCAGCAGGCATCACAAATCACAGTGCTCC
TACCCCTTGTATGGTAGCAGGTGGTCTTGGAAGTGGTGTTTTCCTACATT
TCGACAAAAAATTATCCGATTGTGTCAAACAGTATCCTTGTCTGTATGAC
AGTAAGACTGTTGGGTATAAAGATAAAAAGACAGCAATGAAAGCTTGGGA
ACTGGTTGCCAAAGAAGTCGAAGTCGAGAATGGTGAGCACACATTGTTTC
TATAACAGCCTCAAAGTGAAATTTAGTCAAAACCTGAAAGTAAATTAAGC
TGGTGGCACTGACCTTGAcagccgacggggacgtgctgctgaagtttaaa
aaataaacCCTATACACATCTTAAAAATTTAGTACATTTGGGAcgctgtc
agatatcttcagagcttaaaaaagggaccctgaccagcggcacgtctcTT
TAACCGATTTTGTCAAAGCGTCCCCTCGGTCTGAGCCTCAGacttgaaag
tttcaaaaaatcgattgtaagtttcactttcactttcatttttaggtgAG
CACGCACAGAAATTGTATTTCAATCTGAAAAAGCGATTCCACAAACGCAG
AAATTTTCTCAAACGTCTACAAAGGTCTGGTACCAATAATCACATATTGC
TAAAAAAAGCNAAGATAAAAAGACAGCAATGAAAGCTTGGGAACTGGTTG
CCAAAGAAGTCGAAGTCGAGAATGGTGAGCACACATTGTTTCTATAACAG
CCTCAAAGTGAAATTTAGTCAAAACCTGAAAGCAAATTAAGCCGGTGGCA
CTGACCTTGAcagccgacggggacgtgctgctgaagtttaaaaaataaac
CCTATACACATCTTAAAaatttagtaaatttgggacgctgtcagatatct
tcagagcttaaaaaagggaccctgaccagcggcacgtctcTTTAACCAAT
TTTGTCAAAGTGTCCCCTCGGTCTGAGCCTCAGacttgaaagtttcaaaa
aatcgattgtaagtttcactttcactttcatttttaggtgAGCACGCACA
GAAATTGTATTTCAATCTGAAAAAGCGATTCCACAAACGCAGAAATTTTC
TCAAACGTCTACAAAGGTCTGGTACCAATAATCACATATTGCTAAAAAAA
GCGCGAAGTGACGTCAGCGTATATGCGTTTCTTGATTGGTTGATTCCCTT
CACACAAGTCAGACAGCCACGTGTACCTATCAAGCCTGAAGAGGCGAACT
TACTAGAGGCTAAATATCTAGCTTCTGTTGAAAGTGAAGAATTTTTAGAT
GAAAGACCATCTTTTGTTGATCTACATTACAATAATTCAGCTTCTAGTGA
GAGTTTTGAGCATGAAGGTGGCTTATATGTTAAACAGGAAGCCCCGGATG
ATGAGGAAGCAATGTATCTTGGAGATGAAGAGATCATTACAGTTCGTCCA
TCAAGTCCAATGAATTCAGCACCAACTCCTCCGTCAAGTTTTGGTAACCA
TGGTAATCATAAACAGGAGGAAGATCTACACTCCGATGAGAACCATAATG
TCCCTGAGAAGAGAATTTTGAAAACATCCATTGAAAACACTATTACAGCC
AACAACCTAAATCACGATGAGTTCACCAGAAAACGTACCAGAGATTCCAG
TTTCACAGATCCTGCTCCATCCTTGACTACAACTCACCCAGAGAATTTAA
CCAATAGTCACCACAGACACACACAAGAGCATATTAATAGCAAAAGATCA
AAATTTACTCTAGAAAATCATGCAGCCGATTCGAAATATTCCGACTTAGA
AAATGAAGATAATCTTTTTGGTCAAATGGTTGGAGCAGAACTTAAAGGGT
TGCCTTACAAAGAAAGATGTATtgctaaattgaaaattcaaaacatctta
TTTGATATGCAAATGACTGCATTGAATAAAAGGAACGGTAAATCAGACAG
AAGAGAAAGTCACACTATTTGAATTGGAGAAGAAATGCGGAGAAATCttg
aattattgaaagtttaaaaagaagGCCTCCTATCCAGTGGTATGAGCGAT
TGCGTGATTGGAATCTTTTCAGGCCGTGATGGAGTGATCAATGAAGTAAG
TCCGGAGAGCTATAAGCGAATCttgacctttctcaagcaagaaaaagtga
agccttcaAATATGCGTGGATTGAATCAGCGATTTCATCGTTTTCGGGtg
gtatttttttcgaaatttagcggtaaattttagttttaatctggcatttg
tgtaaaaactaggcGGTTTCGCGGGTCACGGGTCTANtgtttttgaaagt
ttaaaaagaagGCCTCCTATCTAGTGGTATGAGCGATTGCGTGATTGGAA
TCTTTTCAGGCCGTGATGGAGTGATCAATGAAGTAAGTCCGGAGAGCTAT
AAGCGAATCttgacctttctcaagcaagaaaaagtgaagccttcaAATAT
GCGTGGATTGAATCAGCGATTTCATCGTTTTCGGGtggtatttttttcga
aatttagcggtaaattttagttttaatctggcatttgtgtaaaaactagg
cGGTTTCGCGGGTCACGGGTCTACCATTACCAAGGAGATttgcttctagc
ccttcgggcttatacttcattagGTGTGATCAAATCATAGACTAAAAGTG
AAAATGTATTGGGTTGTAGGTTTTTGAGTATACTTGCTGGACAAGATTTG
CTGGGTATTAGACCAGCAGGTAACAGATTTACGGTAACGGATGATATATg
tattttgtaaacaaaaggAAGCCGTATATATTTAGTgacaaaaattgtat
ttttgtctGGTAACATTAATTTAACAGGGTATAATGGCTTTATTGAGCTG
AGAACAAGGAAACCTTTCAAATAACTTTGATTAAGGGGGAATTAGGTGAT
CACATTGAAAAACTAcagcattatttttcttttaatgatAATGCCATCTA
AACAATATTTTACAACACAGCTGTTACTTAGAGGCAAACTTATTAATCCC
GTTTGTACTGGCCGAGGGAAAataatgtatgtggagtaatttgttattca
atggACCGTCGTGTTTGACTAAAGATAAATAGAGTCTGAAGCTTTACTAT
TAAGGAAAAAATGATTTACAAGAGTCAGACTTCAATTTAATACACTCAga
tttatctttccaatggagaaaactttttgattaggaaaattgtttttttg
caaaGGCGCATTTTTTATTTAGGTTTTGTACATATCAAGAGGAAAAGTAA
GAGGTATTTTTTAAACACTAACCCAAGGG Coding sequence (CDS) from alignment at sc0000031:342608..346536+ >TCONS_00003732 ID=TCONS_00003732|Name=TCONS_00003732|organism=Clytia hemisphaerica|type=CDS|length=1962bp|location=Sequence derived from alignment at sc0000031:342608..346536+ (Clytia hemisphaerica)
ATGAAAGCTTGGGAACTGGTTGCCAAAGAAGTCGAAGTCGAGAATGgtgA
GCACGCACAGAAATTGTATTTCAATCTGAAAAAGCGATTCCACAAACGCA
GAAATTTTCTCAAACGTCTACAAAGGTCTGGTACCAATAATCACATATTG
CTAAAAAAAGCGCGAAGTGACGTCAGCGTATATGCGTTTCTTGATTGGTT
GATTCCCTTCACACAAGTCAGACAGCCACGTGTACCTATCAAGCCTGAAG
AGGCGAACTTACTAGAGGCTAAATATCTAGCTTCTGTTGAAAGTGAAGAA
TTTTTAGATGAAAGACCATCTTTTGTTGATCTACATTACAATAATTCAGC
TTCTAGTGAGAGTTTTGAGCATGAAGGTGGCTTATATGTTAAACAGGAAG
CCCCGGATGATGAGGAAGCAATGTATCTTGGAGATGAAGAGATCATTACA
GTTCGTCCATCAAGTCCAATGAATTCAGCACCAACTCCTCCGTCAAGTTT
TGGTAACCATGGTAATCATAAACAGGAGGAAGATCTACACTCCGATGAGA
ACCATAATGTCCCTGAGAAGAGAATTTTGAAAACATCCATTGAAAACACT
ATTACAGCCAACAACCTAAATCACGATGAGTTCACCAGAAAACGTACCAG
AGATTCCAGTTTCACAGATCCTGCTCCATCCTTGACTACAACTCACCCAG
AGAATTTAACCAATAGTCACCACAGACACACACAAGAGCATATTAATAGC
AAAAGATCAAAATTTACTCTAGAAAATCATGCAGCCGATTCGAAATATTC
CGACTTAGAAAATGAAGATAATCTTTTTGGTCAAATGGTTGGAGCAGAAC
TTAAAGGGTTGCCTTACAAAGAAAGATGTATtgctaaattgaaaattcaa
aacatcttaTTTGATATGCAAATGACTGCATTGAATAAAAGGAACGGTAA
ATCAGACAGAAGAGAAAGTCACACTATTTGAATGAAAGCTTGGGAACTGG
TTGCCAAAGAAGTCGAAGTCGAGAATGgtgAGCACGCACAGAAATTGTAT
TTCAATCTGAAAAAGCGATTCCACAAACGCAGAAATTTTCTCAAACGTCT
ACAAAGGTCTGGTACCAATAATCACATATTGCTAAAAAAAGCGCGAAGTG
ACGTCAGCGTATATGCGTTTCTTGATTGGTTGATTCCCTTCACACAAGTC
AGACAGCCACGTGTACCTATCAAGCCTGAAGAGGCGAACTTACTAGAGGC
TAAATATCTAGCTTCTGTTGAAAGTGAAGAATTTTTAGATGAAAGACCAT
CTTTTGTTGATCTACATTACAATAATTCAGCTTCTAGTGAGAGTTTTGAG
CATGAAGGTGGCTTATATGTTAAACAGGAAGCCCCGGATGATGAGGAAGC
AATGTATCTTGGAGATGAAGAGATCATTACAGTTCGTCCATCAAGTCCAA
TGAATTCAGCACCAACTCCTCCGTCAAGTTTTGGTAACCATGGTAATCAT
AAACAGGAGGAAGATCTACACTCCGATGAGAACCATAATGTCCCTGAGAA
GAGAATTTTGAAAACATCCATTGAAAACACTATTACAGCCAACAACCTAA
ATCACGATGAGTTCACCAGAAAACGTACCAGAGATTCCAGTTTCACAGAT
CCTGCTCCATCCTTGACTACAACTCACCCAGAGAATTTAACCAATAGTCA
CCACAGACACACACAAGAGCATATTAATAGCAAAAGATCAAAATTTACTC
TAGAAAATCATGCAGCCGATTCGAAATATTCCGACTTAGAAAATGAAGAT
AATCTTTTTGGTCAAATGGTTGGAGCAGAACTTAAAGGGTTGCCTTACAA
AGAAAGATGTATtgctaaattgaaaattcaaaacatcttaTTTGATATGC
AAATGACTGCATTGAATAAAAGGAACGGTAAATCAGACAGAAGAGAAAGT
CACACTATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003732-exon-sc0000031-1491911889:342608..342646 | TCONS_00003732-exon-sc0000031-1491911889:342608..342646 | Clytia hemisphaerica | exon |
| TCONS_00003732-exon-sc0000031-1510915933:342608..342646 | TCONS_00003732-exon-sc0000031-1510915933:342608..342646 | Clytia hemisphaerica | exon |
| TCONS_00003732-exon-sc0000031-1575043694:342608..342646 | TCONS_00003732-exon-sc0000031-1575043694:342608..342646 | Clytia hemisphaerica | exon |
| TCONS_00003732-exon-sc0000031-1491911889:343044..343489 | TCONS_00003732-exon-sc0000031-1491911889:343044..343489 | Clytia hemisphaerica | exon |
| TCONS_00003732-exon-sc0000031-1510915933:343044..343489 | TCONS_00003732-exon-sc0000031-1510915933:343044..343489 | Clytia hemisphaerica | exon |
| TCONS_00003732-exon-sc0000031-1575043694:343044..343489 | TCONS_00003732-exon-sc0000031-1575043694:343044..343489 | Clytia hemisphaerica | exon |
| TCONS_00003732-exon-sc0000031-1491911889:343803..343981 | TCONS_00003732-exon-sc0000031-1491911889:343803..343981 | Clytia hemisphaerica | exon |
| TCONS_00003732-exon-sc0000031-1510915933:343803..343981 | TCONS_00003732-exon-sc0000031-1510915933:343803..343981 | Clytia hemisphaerica | exon |
| TCONS_00003732-exon-sc0000031-1575043694:343803..343981 | TCONS_00003732-exon-sc0000031-1575043694:343803..343981 | Clytia hemisphaerica | exon |
| TCONS_00003732-exon-sc0000031-1491911889:344295..346536 | TCONS_00003732-exon-sc0000031-1491911889:344295..346536 | Clytia hemisphaerica | exon |
| TCONS_00003732-exon-sc0000031-1510915933:344295..346536 | TCONS_00003732-exon-sc0000031-1510915933:344295..346536 | Clytia hemisphaerica | exon |
| TCONS_00003732-exon-sc0000031-1575043694:344295..346536 | TCONS_00003732-exon-sc0000031-1575043694:344295..346536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:342608..346536 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004210 | BESS_motif |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
|
