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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003725 ID=TCONS_00003725|Name=TCONS_00003725|organism=Clytia hemisphaerica|type=transcript|length=5267bpRun BLAST on NCBI transcript from alignment at sc0000031:211151..222429+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003725 ID=TCONS_00003725|Name=TCONS_00003725|organism=Clytia hemisphaerica|type=transcript|length=11279bp|location=Sequence derived from alignment at sc0000031:211151..222429+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003725 vs. Swiss-Prot (Human)
Match: PAPP2 (Pappalysin-2 OS=Homo sapiens GN=PAPPA2 PE=1 SV=4) HSP 1 Score: 251.521 bits (641), Expect = 3.510e-147 Identity = 186/565 (32.92%), Postives = 280/565 (49.56%), Query Frame = 1
Query: 517 VAYFYGHE---IIRYSNL-DLNFDRFTISFWIYAEGGQQNNAPIVRIYNHCSF-VELSALSFGIRTIE----LETIVYFXXXXXXXXXXXXXXXXXPIKIQTWVHIAGSYDGHKLVLYVNQAKVAASYEQKGIFTSNVYPKCTTLDVGGDSENHLHY-RGAVDHILIVNEAL--NHRTISRKPFVNLKKL--FVLRENFESKYNNGYHTVHGHSPGL-IKREVKSEEQVEVKLEIPKCGHAICDNSEVIQNYVTHPNTYMSL---KKIRYRVVLITQDDRRKCRLTTNDIQKRHKYLVSVFNRENIHLHLDIVKFRNSNLCNKTVLISCYRPCPDDTVHCQQSIPVDPVGCDR-------KCTPDKLNNGHCDIECNNPDGNNDWDQGDCCNPKVTDVTSTCYDPKSPYRAFIEERELKKHLNLSNKEALVIY-PVSLPANFLGKSTYPWTEDIYGVNGGITMNYKSFLPSSDGKENVND-IIHELGHALGLWHVHRGVSE-VSCTNECIEDSPSMITGDLCSDTTPTPINYKCEDRVLHHRQCNGKNESMVYQNTPYKNYMGYV 2127
+ YF G ++R L ++ + FT+ W+ EGGQ N A I ++++CS V + GIR+ + + +F++ T + + + S S + TW H+A +YDG + LYV+ +VA+S +Q G S C +L +GGDS HY RG + ++ + AL +H S + ++ VL +FE P L + + + E ++ L+ P CG +CDN E+I Y N Y L K IRY+VV I D+ ++ I+ +H+ L F+R NI L + + NS L ++ VL++C P HC G D +C +G C +ECNN ND+D GDCC+P+V DV TC+DP SP RA++ +ELK+ L L++ L IY S+ + G +T+PW +D GGI ++ P+ G D +IHE+GH LGL+HV +GVSE SC + C E PSM TGDLC+DT PTP + C + C + P+ NYM Y
Sbjct: 262 ILYFSGRRERLLLRPEVLAEIPREAFTVEAWVKPEGGQNNPAIIAGVFDNCSHTVSDKGWALGIRSGKDKGKRDARFFFSLCTDRVKKATILISHSRYQPGTWTHVAATYDGRHMALYVDGTQVASSLDQSGPLNSPFMASCRSLLLGGDSSEDGHYFRGHLGTLVFWSTALPQSHFQHSSQHSSGEEEATDLVLTASFEPVNTEWVPFRDEKYPRLEVLQGFEPEPEILSPLQPPLCGQTVCDNVELISQY----NGYWPLRGEKVIRYQVVNICDDEGLNPIVSEEQIRLQHEALNEAFSRYNISWQLSVHQVHNSTLRHRVVLVNC-EPSKIGNDHCDPECEHPLTGYDGGDCRLQGRCYSWNRRDGLCHVECNN--MLNDFDDGDCCDPQVADVRKTCFDPDSPKRAYMSVKELKEALQLNSTHFLNIYFASSVREDLAGAATWPWDKDAVTHLGGIVLS-----PAYYGMPGHTDTMIHEVGHVLGLYHVFKGVSERESCNDPCKETVPSMETGDLCADTAPTPKSELCREPEPTSDTCGFTR----FPGAPFTNYMSYT 810 HSP 2 Score: 231.491 bits (589), Expect = 3.510e-147 Identity = 191/716 (26.68%), Postives = 309/716 (43.16%), Query Frame = 3
Query: 2901 TRVEPNTLYTYRIQAXXXXXXXXXXXXXTFRQSDGFCGNGIIEKHRGEECDDSNLRDGDGCDVECRIEAVFNCKLEPSLCYRYDRDGVCEEEERKLETRDCGLYTPNGYIDQWAIDIKGKPLQSSNEFCPEHIITGTPPTDLKCVDGIAEVD---PKIGWRPCNGFNPET-----------FEIFEDYWIEAHFETSVHPVAVIVHISSDGRFDPFSPNETLSIRLRDDQGKLEVINSRVDISCKSNPIYVKVDNNS----IKSKIVRIDFATSNLAISGIAMRYLKPKI---CPRNQIYDKITKTCQPRTEEILP------CPELTLPNANTT-CSNDG---QSCSVKCHVGFK---------RANQNPSL--CDHGTWRNAIGCSIIDCGQP---VIENSKSACGH-TTFGSDCSFICDPGTSQHGFINKITCQSNGHWSKQHSFCVKFCAESPLKEKMETYKEQLPGCLLMEGSKNGMGARCRLQCKRGYRASQKLNDRYQPNIINALCNQNGRWSYDNDCDKITCPLSGYQKMLYSCTDDNRYGSMCSTNCSGTKAENKIECLNTGEWSGSLDVCKS-NKQC-PKLEDTNGVKFSSCHDTRVGSSCQPTCDLRKD-------------LVNQKSPTRIKSAGDQNELLYCMPHTRWSRSATDFRCEEKCYIGGIGDSFCDCQNNRAHCDFDGGDCCKTPV--RFLIPEFGTC 4859
V P +Y Y++ A +G + SPPL +CG+G + + GEECDD +L GDGC C +E FNC EPSLCY Y+ DG+CE ERK DCG+YTP GY+DQWA + + CP ++TG P + L C ++ P GW PC ET + ++ W++ F A+ + +++DG T+++ L D +G + + +SC+ NP+ + V ++ + V ++F++ + IS +A+R +I P N I + + Q ++ P CP L L +A+ C++ G C++ C GF R Q L C G W + C +DCG P ++ + +C T F CS C P G +TC +G WS +C C P+ + LP CL + +G C+ +CK GY ++ + + ++ C + G W + + P + +Y CT+ S C NC+ + + I C G W+ +C++ +C P + N V++ +G+ C P C + L + P +++S + C +W C + C D +CD NNRA+C +DGGDCC + + + +IP C
Sbjct: 1079 VEVTPGQMYQYQVLAEAGGELGEASPPLNHIHGAPYCGDGKVSERLGEECDDGDLVSGDGCSKVCELEEGFNCVGEPSLCYMYEGDGICEPFERKTSIVDCGIYTPKGYLDQWA--TRAYSSHEDKKKCPVSLVTGEPHS-LICTSYHPDLPNHRPLTGWFPCVASENETQDDRSEQPEGSLKKEDEVWLKVCFNRPGEARAIFIFLTTDGLVPGEHQQPTVTLYLTDVRGSNHSLGT-YGLSCQHNPLIINVTHHQNVLFHHTTSVLLNFSSPRVGISAVALR-TSSRIGLSAPSNCISEDEGQNHQGQSCIHRPCGKQDSCPSLLLDHADVVNCTSIGPGLMKCAITCQRGFALQASSGQYIRPMQKEILLTCSSGHWDQNVSCLPVDCGVPDPSLVNYANFSCSEGTKFLKRCSISCVPPAKLQGLSPWLTCLEDGLWSLPEVYCKLECDAPPI---ILNANLLLPHCL---QDNHDVGTICKYECKPGYYVAESAEGKVRNKLLKIQCLEGGIWEQGSCIPVVCEPPPPVFEGMYECTNGFSLDSQCVLNCNQEREKLPILCTKEGLWTQEFKLCENLQGECPPPPSELNSVEYKCEQGYGIGAVCSPLCVIPPSDPVMLPENITADTLEHWMEPVKVQS-------IVCTGRRQWHPDPVLVHCIQSCEPFQ-ADGWCDTINNRAYCHYDGGDCCSSTLSSKKVIPFAADC 1775 HSP 3 Score: 60.8474 bits (146), Expect = 3.510e-147 Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 3
Query: 2130 SCASEFTKQQRARMHCYLDSHYQRWQINSVPPSTIPLKPSLVSYKNKAVTIAWHPPVGSGKQHQR 2324
+C FT Q ARMHCYLD YQ+W S P+ IP+ P ++ NK++TI W PP+ SG + R
Sbjct: 813 NCTDNFTPNQVARMHCYLDLVYQQW-TESRKPTPIPIPPMVIGQTNKSLTIHWLPPI-SGVVYDR 875 HSP 4 Score: 43.5134 bits (101), Expect = 3.510e-147 Identity = 36/167 (21.56%), Postives = 66/167 (39.52%), Query Frame = 2
Query: 2405 SNSLYSLNKIIGPPDAKTTCSRDGNTWFRQHPGINDY--------------LDVWFSKAVVPTGLNIWIN---YDASDSIEDLQVIHTDGSKTSLGPISTNCRTPFTTLVKITKPTKHLRLHLTKDIHRKPSIDAIMLISRKTFDEKKCRNCEKLQLRYRVYRQPQF 2854
S+ ++ + +GPPD C W P ++ Y L++ F V L +W+ ++S + D +++ + LGP+ T C P T + + ++++ + IDA +L S+ C C +RY+V R P F
Sbjct: 905 SSGYWTPEEAVGPPDVDQPCEPSLQAW---SPEVHLYHMNMTVPCPTEGCSLELLFQHPVQADTLTLWVTSFFMESSQVLFDTEILLENKESVHLGPLDTFCDIPLTIKLHVDGKVSGVKVY---TFDERIEIDAALLTSQP--HSPLCSGCRP--VRYQVLRDPPF 1061 The following BLAST results are available for this feature:
BLAST of TCONS_00003725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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