TCONS_00003710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003710
Unique NameTCONS_00003710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003710 ID=TCONS_00003710|Name=TCONS_00003710|organism=Clytia hemisphaerica|type=transcript|length=818bp
CAAAGAAGTACTATAGATTTCAAAGGATTATGTTCAACTGTTTTAATGAC
TTTAGTTGATGCCGGGCATGCACTTAGGGTCTCGATCAgtgcttgtaaat
taaaatcaaTAGAGAATATATATAACACACTGTTGTTTTCATCAGAAACC
ACCAGTGAAGATTGACCTTTTTTTACCATACTTACAACGTTATCAGCTGA
GTATTGGCGATTAAAAGAGCTAAACGGCACACCATCGGTAACCTGGAGAG
AAGTGAAATCATACACACATACAAACGATTTTCATTAAGCTGATGATTGT
CATCCATGCGGGcggcatgaaacttaaagttctaaacaataaatcaaagt
ctctttcgtttaatttgaacaagatcTGATATCATCGATCACTCTCGGGA
CATATTtagaactttaagtttcatgccaCCCGCATGGATGACAATCATCA
GCTTAATGAAAATCGTTTGTATGTGTGTATGATTTCACTTCTCTCCAGGT
TACCGATGGTGTGCCGTTTAGATACAAGAAAACCTTTTTAtttgtattta
atttttgcgattttgacACCTCGTGTGGATTAACGTTGGGAGGAGTTTCA
AAAAACCTGTTCCTTACAAGACAACAACATCAAACTAAGAATTCTGGTCT
TTCAACCAAAAAATTACCCattcttttcaaaattctcTTTCCCATAGACA
TATGGCATACCGAAAttcaaaactaatcaatgaacattgaaacaatgaaa
cacataaaacgtaactggacaaaataaaaaaatatacaatgaaagCATGT
CTATTGGTAGAAATTATC
Run BLAST on NCBI

transcript from alignment at sc0000030:742488..743305

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003710 ID=TCONS_00003710|Name=TCONS_00003710|organism=Clytia hemisphaerica|type=transcript|length=818bp|location=Sequence derived from alignment at sc0000030:742488..743305 (Clytia hemisphaerica)
GATAATTTCTACCAATAGACATGctttcattgtatatttttttattttgt
ccagttacgttttatgtgtttcattgtttcaatgttcattgattagtttt
gaaTTTCGGTATGCCATATGTCTATGGGAAAgagaattttgaaaagaatG
GGTAATTTTTTGGTTGAAAGACCAGAATTCTTAGTTTGATGTTGTTGTCT
TGTAAGGAACAGGTTTTTTGAAACTCCTCCCAACGTTAATCCACACGAGG
TgtcaaaatcgcaaaaattaaatacaaaTAAAAAGGTTTTCTTGTATCTA
AACGGCACACCATCGGTAACCTGGAGAGAAGTGAAATCATACACACATAC
AAACGATTTTCATTAAGCTGATGATTGTCATCCATGCGGGtggcatgaaa
cttaaagttctaAATATGTCCCGAGAGTGATCGATGATATCAgatcttgt
tcaaattaaacgaaagagactttgatttattgtttagaactttaagtttc
atgccgCCCGCATGGATGACAATCATCAGCTTAATGAAAATCGTTTGTAT
GTGTGTATGATTTCACTTCTCTCCAGGTTACCGATGGTGTGCCGTTTAGC
TCTTTTAATCGCCAATACTCAGCTGATAACGTTGTAAGTATGGTAAAAAA
AGGTCAATCTTCACTGGTGGTTTCTGATGAAAACAACAGTGTGTTATATA
TATTCTCTAttgattttaatttacaagcacTGATCGAGACCCTAAGTGCA
TGCCCGGCATCAACTAAAGTCATTAAAACAGTTGAACATAATCCTTTGAA
ATCTATAGTACTTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002070XLOC_002070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003710-exon-sc0000030-1491911889:742488..743305TCONS_00003710-exon-sc0000030-1491911889:742488..743305Clytia hemisphaericaexon
TCONS_00003710-exon-sc0000030-1510915933:742488..743305TCONS_00003710-exon-sc0000030-1510915933:742488..743305Clytia hemisphaericaexon
TCONS_00003710-exon-sc0000030-1575043694:742488..743305TCONS_00003710-exon-sc0000030-1575043694:742488..743305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:742488..743305 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144981	0	0.0713151	0.284418	0	0	0.0748969	0	0	0	0.354125	0.155192	0.0388569	0	0.0330978	0.0356161	0	0	0	0	0.056325	0	0.13404	0.0607262	0.376167	0.896074	0	0.0856233	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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