TCONS_00003685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003685
Unique NameTCONS_00003685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003685 ID=TCONS_00003685|Name=TCONS_00003685|organism=Clytia hemisphaerica|type=transcript|length=530bp
GGATTATTGAGTTTTCTCGGGGTGGCAATAATTGCAGACCCTCAATTATT
TTTCTCTGACCAAACCTCGCTAAAGGGACCAAGTAATACAAGTTTGACTC
CAATCAATACAACGTCTTCAGTCTTGAATGGGACTAATATCGACGAAGCG
GCGCCCTACAGCAAAATTGTCGCCGTTGGGTTTGCTCTTATGGGTGCAAT
GTTGTTAAGTTTATATATGGTGATATTAAAATATAATACAAGTGATANCA
TGGGTGCAATGTTGTTAAGTTTATATATGGTGATATTAAAATATAATACA
AGTGATAAAGTCGATTTTAGAGTTGCCGTGTTTTACCCAAGTATTTGCGG
ACTCTGGTTACCGCCTTTTGTTCAGGCGGTCGAGCGGCGCCCCTTTGGAT
TTAACCAACTAACATATGACTTTTGGCTTATAATGATTGCAGGCGCCGTA
TCATATTTTATCGCCATGTTCCTAATGGCGTACGCCCTGTATATGGCGGA
AGCAGGTCCAGCCGCCTTAGTTCGTAATGC
Run BLAST on NCBI

protein sequence of TCONS_00003685-protein

>TCONS_00003685-protein ID=TCONS_00003685-protein|Name=TCONS_00003685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
GLLSFLGVAIIADPQLFFSDQTSLKGPSNTSLTPINTTSSVLNGTNIDEA
APYSKIVAVGFALMGAMLLSLYMVILKYNTSDXMGAMLLSLYMVILKYNT
SDKVDFRVAVFYPSICGLWLPPFVQAVERRPFGFNQLTYDFWLIMIAGAV
SYFIAMFLMAYALYMAEAGPAALVRN
Run BLAST on NCBI

transcript from alignment at sc0000030:248744..249273

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003685 ID=TCONS_00003685|Name=TCONS_00003685|organism=Clytia hemisphaerica|type=transcript|length=530bp|location=Sequence derived from alignment at sc0000030:248744..249273 (Clytia hemisphaerica)
GCATTACGAACTAAGGCGGCTGGACCTGCTTCCGCCATATACAGGGCGTA
CGCCATTAGGAACATGGCGATAAAATATGATACGGCGCCTGCAATCATTA
TAAGCCAAAAGTCATATGTTAGTTGGTTAAATCCAAAGGGGCGCCGCTCG
ACCGCCTGAACAAAAGGCGGTAACCAGAGTCCGCAAATACTTGGGTAAAA
CACGGCAACTCTAAAATCGACTTTATCACTTGTATTATATTTTAATATCA
CCATATATAAACTTAACAACATTGCACCCATGNTATCACTTGTATTATAT
TTTAATATCACCATATATAAACTTAACAACATTGCACCCATAAGAGCAAA
CCCAACGGCGACAATTTTGCTGTAGGGCGCCGCTTCGTCGATATTAGTCC
CATTCAAGACTGAAGACGTTGTATTGATTGGAGTCAAACTTGTATTACTT
GGTCCCTTTAGCGAGGTTTGGTCAGAGAAAAATAATTGAGGGTCTGCAAT
TATTGCCACCCCGAGAAAACTCAATAATCC

Coding sequence (CDS) from alignment at sc0000030:248744..249273

>TCONS_00003685 ID=TCONS_00003685|Name=TCONS_00003685|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000030:248744..249273 (Clytia hemisphaerica)
ATTACGAACTAAGGCGGCTGGACCTGCTTCCGCCATATACAGGGCGTACG
CCATTAGGAACATGGCGATAAAATATGATACGGCGCCTGCAATCATTATA
AGCCAAAAGTCATATGTTAGTTGGTTAAATCCAAAGGGGCGCCGCTCGAC
CGCCTGAACAAAAGGCGGTAACCAGAGTCCGCAAATACTTGGGTAAAACA
CGGCAACTCTAAAATCGACTTTATCACTTGTATTATATTTTAATATCACC
ATATATAAACTTAACAACATTGCACCCATGNTATCACTTGTATTATATTT
TAATATCACCATATATAAACTTAACAACATTGCACCCATAAGAGCAAACC
CAACGGCGACAATTTTGCTGTAGGGCGCCGCTTCGTCGATATTAGTCCCA
TTCAAGACTGAAGACGTTGTATTGATTGGAGTCAAACTTGTATTACTTGG
TCCCTTTAGCGAGGTTTGGTCAGAGAAAAATAATTGAGGGTCTGCAATTA
TTGCCACCCCGAGAAAACTCAATAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002045XLOC_002045Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003685-exon-sc0000030-1491911889:248744..249273TCONS_00003685-exon-sc0000030-1491911889:248744..249273Clytia hemisphaericaexon
TCONS_00003685-exon-sc0000030-1510915933:248744..249273TCONS_00003685-exon-sc0000030-1510915933:248744..249273Clytia hemisphaericaexon
TCONS_00003685-exon-sc0000030-1575043694:248744..249273TCONS_00003685-exon-sc0000030-1575043694:248744..249273Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003685-proteinTCONS_00003685-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:248744..249273 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.6667	0.745031	0.142094	0.214472	0	0.151075	0	0.0736074	0.798675	0.325341	0	0.0730876	0	0	0	0	0	0	0	0	0	0.105904	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top