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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003671 ID=TCONS_00003671|Name=TCONS_00003671|organism=Clytia hemisphaerica|type=transcript|length=2369bp
NTATCCTATGCTTACGTGGATCGAGAACTGTTAGGAAATTGAACATTGAT
ATGAATGAGATTGAAATTCATGAATCTACTAGgagaaatttttagtcaat
CTCTTTTATTATTCGTcgattttgagattattttttttcagacttttGCA
TTCTCGTTAACCCCTTGTTTTGCGCCCGGCGTGACCGCAAGGTTGTGCCA
CTATCCTTATGATGTGGATTTGTGATACTTGATTTGTTTGCCtcttatta
ttcgtttttaactaatttagtcttataatatttatatttattctaATGTA
TATCTGGTACAGGCTGTCctttaaaagtgacgtcaaaaaagacaACTCAA
GAAGACCCTCCAATGCGACgttgaaaaagaagatgctaaattgttttcaa
aattgacGTCAGGGTCAACGGTTTCGAAATTTtatatttcgaaaattttt
agcCGAGAAGAGAAAAGTGGACAAGACGTCGAAATTatcatctattgttt
aattgttttttccAATTTATCTTGAAACAAGCATTTTCAATGGCTACAAA
ACCAACGCTCGTGAAAATTCACTCAAATGTCAAATCATCATCACCGAATT
CGACCATAAAACGAACGCCCTCCAAAATGACCCCCTCgaaaaacaagaag
aaacaGCCACAAACTCCATCAAGACTCATAAAAGAGTTGGAGATAGATTG
CGTGCAGCAGAATGTAGCAGTCATCGGAAAACGAAAGTGTCACCAGAAAG
CGcgaaaaaacataaacaaccAGATGACTGAAGAGAGGCATACATCAAGT
CAGGTACCGAAACACGATCAAACCATCATCGAAGAAATCAACTCTAAGAG
GTCATCATACGTCAACGCTCGCAAACAAATCACTGACCAAACACGTTTCA
TGAAGTATAGTATTGTTCCCAATGACCTATATGAAAACGTGATAACAGAA
GATGTGCAGCCAAGAAGTCACCAAGAGCCAGTTTATGACGAGCAAGCAAC
CCTTACACCATTCGTCGAGGAAACTCCGAAACATACACCGAAAAGTCAAA
AGAATGCCTCAAATCAACATCAAGAAAGTGAACGACCGAATCAAAGACAA
GAAAGACCAACAAGAAACGTCGAATTTCAACTTGGATACTTTATGGATCA
ACAAATCGAATTCCTGAACAACAAGAAAGTTGCTCGTTGTGATATCAtcg
ttttcaataaaaaacccGTGAGGTTCTATTGTGTTTCTGACTGTGTCGAC
CCAACGACGGCGatagattttgaattttcgaTACTTCATCGTCAATGGAT
CACAactcaatttaaaattttaactaaaGATCTTAAGGAAGGTCGCGTGT
TTCGAGTTATCCCTGTTAACTGGGATCGACGTACAGACAAAGTCAAATGG
ATGAGAAGATCAAAATGTTCAAGAGAAATAATTTACGATTCAGAACCAAA
CTGTGAATACTTGCTTCATCGGATTCGTAGATCTGTCTACCAGACAGGGT
GCAAACCATTGATTGTTGATAATCTGTTTGGACTTTGGACTTCAGAAGAA
ATTAACCAGTGCAGCATTGAAAGCTTTGGCGATGAATCAGAACTAGATTT
CTCCTCAAACTGTTCCTCGTATGCATGCACTCCCACCAAACTTTCTGTCA
CTGGCTCCCCTATAGCGACACCGACACCAATGAGCCCGATTGTAAAAGCA
AGAGAGCGAATGCTAAACCTTACAAACAAATCAAACCCGCCATCTCCTTT
GAGGAGCCGCATGAAACGCAAATATTCAATCAACTCTCCTATTAATCAAA
GTCCGAAACTTTCGACTCTGAAAATGTCACCACTAGCCAAACGCTTAAAG
ACAGAACATAGCACTCCTCGCGCATGCGTAAAGCAAACCAAAGAGAAAAA
TGGATCGATTAATCGAACCAAATGTGATAAAAAACTCCCTCCGTCTCCTC
TGATTCACGAGTCAACTCTTCCCAAAAGACAATCAGCGGTCAACGCTCGT
AGAGAAATCAATTTCCAATTGGCAATCGACGAAGATAATATCGAAGTTTA
CGatatgaaagaaaaagaaagacaaCATTGTTGAAACAGACACAATTGAG
TAAACTAAATTAATCATTAATTCCCCTATGCCAATAGCCCAATTAGGATC
TTCTTCTTCGGATTAAACTTTGTTCTCCAGGGGACGTTACAATGTTAATA
GAAAGGATGGTATCCGTACCAAAATGGACCTTGACATGACATCCTTTAAC
GGATTAGTACTTCTACACACATTACGGTTATTGTTTTTACTAAATTTGGA
ATTcaaagataatatttttggcAGCTCTGACTTAAATTGAATTTTATTTG
AATAGAATATTTCGAGGAT Run BLAST on NCBI transcript from alignment at sc0000030:754955..758981- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003671 ID=TCONS_00003671|Name=TCONS_00003671|organism=Clytia hemisphaerica|type=transcript|length=4027bp|location=Sequence derived from alignment at sc0000030:754955..758981- (Clytia hemisphaerica)
NTATCCTATGCTTACGTGGATCGAGAACTGTTAGGAAATTGAACATTGAT
ATGAATGAGATTGAAATTCATGAATCTACTAGGAGAAATTTTTAGTCAAT
CTCTTTTATTATTCGTCGATTTTGAGATTATTTTTTTTCAGACTTTTGCA
TTCTCGTTAACCCCTTGTTTTGCGCCCGGCGTGACCGCAAGGTTGTGCCA
CTATCCTTATGATGTGGATTTGTGATACTTGATTTGTTTGCCTCTTATTA
TTCGTTTTTAACTAATTTAGTCTTATAATATTTATATTTATTCTAATGTA
TATCTGGTACAGGCTGTCCTTTAAAAGTGACGTCAAAAAAGACAACTCAA
GAAGACCCTCCAATGCGACGTTGAAAAAGAAGATGCTAAATTGTTTTCAA
AATTGACGTCAGGGTCAACGGTTTCGAAATTTTATATTTCGAAAATTTTT
AGCCGAGAAGAGAAAAGTGGACAAGACGTCGAAATTATCATCTATTGTTT
AATTGTTTTTTCCAATTTATCTTGAAACAAGCATTTTCAATGGCTACAAA
ACCAACGCTCGTGAAAATTCACTCAAATGTCAAATCATCATCACCGAATT
CGACCATAAAACGAACGCCCTCCAAAATGACCCCCTCGAAAAACAAGAAG
AAACAGCCACAAACTCCATCAAGACTCATAAAAGGTACTAAGAAATGATA
ATTTATTTTTTTACGATATTCAGTAATAGATAATCTTAAATTGATTTAAA
GAAGTTAAAAATTCCCAAAATCCTGATAATCTTAGCTTAATTTATCATTT
GGCGCTGGGAAAAATTTTATGGGAAGACTGTGACATGCTACTTTATGACT
TTATTTTGAGTAGTTAAAGGAAGAAATTTTGACGGGAGTTTAATTTGGCG
GATGGCGGAAAAATTAAATTTGGAACTTTATTTGGCAGATTTGGCAAATT
TTCTTTCCGCCAAAATTACTTATATACCTATTGAATCTTTTTATCTACAG
AGTTGGAGATAGATTGCGTGCAGCAGAATGTAGCAGTCATCGGAAAACGA
AAGTGTCACCAGAAAGCGCGAAAAAACATAAACAACCAGATGACTGAAGA
GAGGCATACATCAAGTCAGGTACCGAAACACGATCAAACCATCATCGAAG
AAATCAACTCTAAGAGGTCATCATACGTCAACGCTCGCAAACAAATCACT
GACCAAACACGTTTCATGAAGTATAGTATTGTTCCCAATGACCTATATGA
AAACGTGATAACAGAAGATGTGCAGCCAAGAAGTCACCAAGGTACTTACA
TTTGTATTTTCGAGTTCAACTCTCTGAGATGACATCGACTCTTATTGATT
ACTCCAATTTTTCTACAATCGAAGTCATAATATTTGAGAAAAAAGGGAAA
TTCCCACGAAATCTTACAACCACAAACGATTTGGAAGCGCTCTAAATTAG
GTTGGACGGGTAGAGTTTTAACTCTGAGTTTTAACCCTAGACTTAAAACT
NAAACGATTTGGAAGCACTCTAAATTAGGTTGGACACTAGACTTAAGACT
TAGGACTTTAGGATCTGAGGAACTAAAAGTCCAAGAATGGTCCAATAGGG
CTCAGAATATAGCCTGGAAGTCTATAAACCCCTCCCGAATTGAAATATTC
AAATAAATTCATCAATTTGTTCAAAAGCGACTTTTACGCCCGTGCTTGAT
CAGCATGAATGTTTGAGAAAGGCCATTTCATAGTCCCCGCAATGCGTAAT
TAGAACTCTGCACTAATGGAAAGTACTAATTGGTTCAAAATTTCAATCAT
TTTTTACGTCTGGCCAACAGGAAAAGGTGTCACCAGAGCGAAATCAGTCC
TGGTTGTCCATGATTGCGAGATGGTCAATGGAAAAATCCGTCAGCTTGAA
ATTAGGGGAATCTAGAACTGAGACGATGAGCTGCTCCCAGAAGTCNATGG
AAAAATCCGTCAGCTTGAAATTAGGGGAGTCTAGAACTGAGACGAAGAGC
TGCTCCCAGAAGTCAAATTGATGATTAACATATATTGGTGAAATTAGAAA
CTACCTATTCAAATTTCTTACGATCTTCTTGTCCATTTAGAGCCAGTTTA
TGACGAGCAAGCAACCCTTACACCATTCGTCGAGGAAACTCCGAAACATA
CACCGAAAAGTCAAAAGAATGGTGAGGATTTTGAATTTTAATTGACCTTT
TCATAACTTACGTCACGTATAATTCCTGCCTCGTCTTGGAACGGTTACCA
AGGTGATTATCTTCCTTGAGACATACAATAATTTCCCAATGAAAAGTATA
CACCTCTAAGAAATTTCGTTGGTTGAGTTTTCATAGCATAATTTCCAAAA
CGAGGCTCAAATTGTTCGAAGTCTTCTAAGGAATAAGCTCCGACAATCTA
AGTTTTAAGACTTAGGACCTTAGGACCTCAGGATCTAAAAGCTCAAAAAT
GTCCCAATAAGGCTGAGAATATAGCCTGCCCAAATCGGAAATCCAATGAA
ACAAAGTAGAAGTATTGAAACTGCAATTCTCGCCCGACCTTTAAATTTTC
AAAACCAAAAGTGCCGATATGTTTCGGCGCCGATTGTAGAAACAATTTTT
AACAGTAGTTTCTCTAAACTGGTCGCAGAAAGAACACGAACACTTATCCT
CTGAAAATGTTAACGTGCAAAGGACACTATGATGAAGACTGTATTATCAT
CACAATTGTTTTAGCCTCAAATCAACATCAAGAAAGTGAACGACCGAATC
AAAGACAAGAAAGACCAACAAGAAACGTCGAATTTCAACTTGGATACTTT
ATGGATCAACAAATCGAATTCCTGAACAACAAGAAAGTTGCTCGTTGTGA
TATCATCGTTTTCAATAAAAAACCCGTGAGGTTCTATTGTGTTTCTGACT
GTGTCGACCCAACGACGGCGATAGATTTTGAATTTTCGATACTTCATCGT
CAATGGATCACAACTCAATTTAAAATTTTAACTAAAGATCTTAAGGAAGG
TCGCGTGTTTCGAGTTATCCCTGTTAACTGGGATCGACGTACAGACAAAG
TCAAATGGATGAGAAGATCAAAATGTTCAAGAGAAATAATTTACGATTCA
GAACCAAACTGTGAATACTTGCTTCATCGGATTCGTAGATCTGTCTACCA
GACAGGGTGCAAACCATTGATTGTTGATAATCTGTTTGGACTTTGGACTT
CAGAAGAAATTAACCAGTGCAGCATTGAAAGCTTTGGCGATGAATCAGAA
CTAGATTTCTCCTCAAACTGTTCCTCGTATGCATGCACTCCCACCAAACT
TTCTGTCACTGGCTCCCCTATAGCGACACCGACACCAATGAGCCCGATTG
TAAAAGCAAGAGAGCGAATGCTAAACCTTACAAACAAATCAAACCCGCCA
TCTCCTTTGAGGAGCCGCATGAAACGCAAATATTCAATCAACTCTCCTAT
TAATCAAAGTCCGAAACTTTCGACTCTGAAAATGTCACCACTAGCCAAAC
GCTTAAAGACAGAACATAGCACTCCTCGCGCATGCGTAAAGCAAACCAAA
GAGAAAAATGGATCGATTAATCGAACCAAATGTGATAAAAAACTCCCTCC
GTCTCCTCTGATTCACGAGTCAACTCTTCCCAAAAGACAATCAGCGGTCA
ACGCTCGTAGAGAAATCAATTTCCAATTGGCAATCGACGAAGATAATATC
GAAGTTTACGATATGAAAGAAAAAGAAAGACAACATTGTTGAAACAGACA
CAATTGAGTAAACTAAATTAATCATTAATTCCCCTATGCCAATAGCCCAA
TTAGGATCTTCTTCTTCGGATTAAACTTTGTTCTCCAGGGGACGTTACAA
TGTTAATAGAAAGGATGGTATCCGTACCAAAATGGACCTTGACATGACAT
CCTTTAACGGATTAGTACTTCTACACACATTACGGTTATTGTTTTTACTA
AATTTGGAATTCAAAGATAATATTTTTGGCAGCTCTGACTTAAATTGAAT
TTTATTTGAATAGAATATTTCGAGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003671-exon-sc0000030-1575043694:758298..758981 | TCONS_00003671-exon-sc0000030-1575043694:758298..758981 | Clytia hemisphaerica | exon |
| TCONS_00003671-exon-sc0000030-1575043694:757691..757981 | TCONS_00003671-exon-sc0000030-1575043694:757691..757981 | Clytia hemisphaerica | exon |
| TCONS_00003671-exon-sc0000030-1575043694:756811..756891 | TCONS_00003671-exon-sc0000030-1575043694:756811..756891 | Clytia hemisphaerica | exon |
| TCONS_00003671-exon-sc0000030-1575043694:754955..756267 | TCONS_00003671-exon-sc0000030-1575043694:754955..756267 | Clytia hemisphaerica | exon |
| TCONS_00003671-exon-sc0000030-1510915933:758298..758981 | TCONS_00003671-exon-sc0000030-1510915933:758298..758981 | Clytia hemisphaerica | exon |
| TCONS_00003671-exon-sc0000030-1510915933:757691..757981 | TCONS_00003671-exon-sc0000030-1510915933:757691..757981 | Clytia hemisphaerica | exon |
| TCONS_00003671-exon-sc0000030-1510915933:756811..756891 | TCONS_00003671-exon-sc0000030-1510915933:756811..756891 | Clytia hemisphaerica | exon |
| TCONS_00003671-exon-sc0000030-1510915933:754955..756267 | TCONS_00003671-exon-sc0000030-1510915933:754955..756267 | Clytia hemisphaerica | exon |
| TCONS_00003671-exon-sc0000030-1491911889:758298..758981 | TCONS_00003671-exon-sc0000030-1491911889:758298..758981 | Clytia hemisphaerica | exon |
| TCONS_00003671-exon-sc0000030-1491911889:757691..757981 | TCONS_00003671-exon-sc0000030-1491911889:757691..757981 | Clytia hemisphaerica | exon |
| TCONS_00003671-exon-sc0000030-1491911889:756811..756891 | TCONS_00003671-exon-sc0000030-1491911889:756811..756891 | Clytia hemisphaerica | exon |
| TCONS_00003671-exon-sc0000030-1491911889:754955..756267 | TCONS_00003671-exon-sc0000030-1491911889:754955..756267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:754955..758981 - |
Blast
The following BLAST results are available for this feature:
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