TCONS_00003671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003671
Unique NameTCONS_00003671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003671 ID=TCONS_00003671|Name=TCONS_00003671|organism=Clytia hemisphaerica|type=transcript|length=2369bp
NTATCCTATGCTTACGTGGATCGAGAACTGTTAGGAAATTGAACATTGAT
ATGAATGAGATTGAAATTCATGAATCTACTAGgagaaatttttagtcaat
CTCTTTTATTATTCGTcgattttgagattattttttttcagacttttGCA
TTCTCGTTAACCCCTTGTTTTGCGCCCGGCGTGACCGCAAGGTTGTGCCA
CTATCCTTATGATGTGGATTTGTGATACTTGATTTGTTTGCCtcttatta
ttcgtttttaactaatttagtcttataatatttatatttattctaATGTA
TATCTGGTACAGGCTGTCctttaaaagtgacgtcaaaaaagacaACTCAA
GAAGACCCTCCAATGCGACgttgaaaaagaagatgctaaattgttttcaa
aattgacGTCAGGGTCAACGGTTTCGAAATTTtatatttcgaaaattttt
agcCGAGAAGAGAAAAGTGGACAAGACGTCGAAATTatcatctattgttt
aattgttttttccAATTTATCTTGAAACAAGCATTTTCAATGGCTACAAA
ACCAACGCTCGTGAAAATTCACTCAAATGTCAAATCATCATCACCGAATT
CGACCATAAAACGAACGCCCTCCAAAATGACCCCCTCgaaaaacaagaag
aaacaGCCACAAACTCCATCAAGACTCATAAAAGAGTTGGAGATAGATTG
CGTGCAGCAGAATGTAGCAGTCATCGGAAAACGAAAGTGTCACCAGAAAG
CGcgaaaaaacataaacaaccAGATGACTGAAGAGAGGCATACATCAAGT
CAGGTACCGAAACACGATCAAACCATCATCGAAGAAATCAACTCTAAGAG
GTCATCATACGTCAACGCTCGCAAACAAATCACTGACCAAACACGTTTCA
TGAAGTATAGTATTGTTCCCAATGACCTATATGAAAACGTGATAACAGAA
GATGTGCAGCCAAGAAGTCACCAAGAGCCAGTTTATGACGAGCAAGCAAC
CCTTACACCATTCGTCGAGGAAACTCCGAAACATACACCGAAAAGTCAAA
AGAATGCCTCAAATCAACATCAAGAAAGTGAACGACCGAATCAAAGACAA
GAAAGACCAACAAGAAACGTCGAATTTCAACTTGGATACTTTATGGATCA
ACAAATCGAATTCCTGAACAACAAGAAAGTTGCTCGTTGTGATATCAtcg
ttttcaataaaaaacccGTGAGGTTCTATTGTGTTTCTGACTGTGTCGAC
CCAACGACGGCGatagattttgaattttcgaTACTTCATCGTCAATGGAT
CACAactcaatttaaaattttaactaaaGATCTTAAGGAAGGTCGCGTGT
TTCGAGTTATCCCTGTTAACTGGGATCGACGTACAGACAAAGTCAAATGG
ATGAGAAGATCAAAATGTTCAAGAGAAATAATTTACGATTCAGAACCAAA
CTGTGAATACTTGCTTCATCGGATTCGTAGATCTGTCTACCAGACAGGGT
GCAAACCATTGATTGTTGATAATCTGTTTGGACTTTGGACTTCAGAAGAA
ATTAACCAGTGCAGCATTGAAAGCTTTGGCGATGAATCAGAACTAGATTT
CTCCTCAAACTGTTCCTCGTATGCATGCACTCCCACCAAACTTTCTGTCA
CTGGCTCCCCTATAGCGACACCGACACCAATGAGCCCGATTGTAAAAGCA
AGAGAGCGAATGCTAAACCTTACAAACAAATCAAACCCGCCATCTCCTTT
GAGGAGCCGCATGAAACGCAAATATTCAATCAACTCTCCTATTAATCAAA
GTCCGAAACTTTCGACTCTGAAAATGTCACCACTAGCCAAACGCTTAAAG
ACAGAACATAGCACTCCTCGCGCATGCGTAAAGCAAACCAAAGAGAAAAA
TGGATCGATTAATCGAACCAAATGTGATAAAAAACTCCCTCCGTCTCCTC
TGATTCACGAGTCAACTCTTCCCAAAAGACAATCAGCGGTCAACGCTCGT
AGAGAAATCAATTTCCAATTGGCAATCGACGAAGATAATATCGAAGTTTA
CGatatgaaagaaaaagaaagacaaCATTGTTGAAACAGACACAATTGAG
TAAACTAAATTAATCATTAATTCCCCTATGCCAATAGCCCAATTAGGATC
TTCTTCTTCGGATTAAACTTTGTTCTCCAGGGGACGTTACAATGTTAATA
GAAAGGATGGTATCCGTACCAAAATGGACCTTGACATGACATCCTTTAAC
GGATTAGTACTTCTACACACATTACGGTTATTGTTTTTACTAAATTTGGA
ATTcaaagataatatttttggcAGCTCTGACTTAAATTGAATTTTATTTG
AATAGAATATTTCGAGGAT
Run BLAST on NCBI

transcript from alignment at sc0000030:754955..758981-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003671 ID=TCONS_00003671|Name=TCONS_00003671|organism=Clytia hemisphaerica|type=transcript|length=4027bp|location=Sequence derived from alignment at sc0000030:754955..758981- (Clytia hemisphaerica)
NTATCCTATGCTTACGTGGATCGAGAACTGTTAGGAAATTGAACATTGAT
ATGAATGAGATTGAAATTCATGAATCTACTAGGAGAAATTTTTAGTCAAT
CTCTTTTATTATTCGTCGATTTTGAGATTATTTTTTTTCAGACTTTTGCA
TTCTCGTTAACCCCTTGTTTTGCGCCCGGCGTGACCGCAAGGTTGTGCCA
CTATCCTTATGATGTGGATTTGTGATACTTGATTTGTTTGCCTCTTATTA
TTCGTTTTTAACTAATTTAGTCTTATAATATTTATATTTATTCTAATGTA
TATCTGGTACAGGCTGTCCTTTAAAAGTGACGTCAAAAAAGACAACTCAA
GAAGACCCTCCAATGCGACGTTGAAAAAGAAGATGCTAAATTGTTTTCAA
AATTGACGTCAGGGTCAACGGTTTCGAAATTTTATATTTCGAAAATTTTT
AGCCGAGAAGAGAAAAGTGGACAAGACGTCGAAATTATCATCTATTGTTT
AATTGTTTTTTCCAATTTATCTTGAAACAAGCATTTTCAATGGCTACAAA
ACCAACGCTCGTGAAAATTCACTCAAATGTCAAATCATCATCACCGAATT
CGACCATAAAACGAACGCCCTCCAAAATGACCCCCTCGAAAAACAAGAAG
AAACAGCCACAAACTCCATCAAGACTCATAAAAGGTACTAAGAAATGATA
ATTTATTTTTTTACGATATTCAGTAATAGATAATCTTAAATTGATTTAAA
GAAGTTAAAAATTCCCAAAATCCTGATAATCTTAGCTTAATTTATCATTT
GGCGCTGGGAAAAATTTTATGGGAAGACTGTGACATGCTACTTTATGACT
TTATTTTGAGTAGTTAAAGGAAGAAATTTTGACGGGAGTTTAATTTGGCG
GATGGCGGAAAAATTAAATTTGGAACTTTATTTGGCAGATTTGGCAAATT
TTCTTTCCGCCAAAATTACTTATATACCTATTGAATCTTTTTATCTACAG
AGTTGGAGATAGATTGCGTGCAGCAGAATGTAGCAGTCATCGGAAAACGA
AAGTGTCACCAGAAAGCGCGAAAAAACATAAACAACCAGATGACTGAAGA
GAGGCATACATCAAGTCAGGTACCGAAACACGATCAAACCATCATCGAAG
AAATCAACTCTAAGAGGTCATCATACGTCAACGCTCGCAAACAAATCACT
GACCAAACACGTTTCATGAAGTATAGTATTGTTCCCAATGACCTATATGA
AAACGTGATAACAGAAGATGTGCAGCCAAGAAGTCACCAAGGTACTTACA
TTTGTATTTTCGAGTTCAACTCTCTGAGATGACATCGACTCTTATTGATT
ACTCCAATTTTTCTACAATCGAAGTCATAATATTTGAGAAAAAAGGGAAA
TTCCCACGAAATCTTACAACCACAAACGATTTGGAAGCGCTCTAAATTAG
GTTGGACGGGTAGAGTTTTAACTCTGAGTTTTAACCCTAGACTTAAAACT
NAAACGATTTGGAAGCACTCTAAATTAGGTTGGACACTAGACTTAAGACT
TAGGACTTTAGGATCTGAGGAACTAAAAGTCCAAGAATGGTCCAATAGGG
CTCAGAATATAGCCTGGAAGTCTATAAACCCCTCCCGAATTGAAATATTC
AAATAAATTCATCAATTTGTTCAAAAGCGACTTTTACGCCCGTGCTTGAT
CAGCATGAATGTTTGAGAAAGGCCATTTCATAGTCCCCGCAATGCGTAAT
TAGAACTCTGCACTAATGGAAAGTACTAATTGGTTCAAAATTTCAATCAT
TTTTTACGTCTGGCCAACAGGAAAAGGTGTCACCAGAGCGAAATCAGTCC
TGGTTGTCCATGATTGCGAGATGGTCAATGGAAAAATCCGTCAGCTTGAA
ATTAGGGGAATCTAGAACTGAGACGATGAGCTGCTCCCAGAAGTCNATGG
AAAAATCCGTCAGCTTGAAATTAGGGGAGTCTAGAACTGAGACGAAGAGC
TGCTCCCAGAAGTCAAATTGATGATTAACATATATTGGTGAAATTAGAAA
CTACCTATTCAAATTTCTTACGATCTTCTTGTCCATTTAGAGCCAGTTTA
TGACGAGCAAGCAACCCTTACACCATTCGTCGAGGAAACTCCGAAACATA
CACCGAAAAGTCAAAAGAATGGTGAGGATTTTGAATTTTAATTGACCTTT
TCATAACTTACGTCACGTATAATTCCTGCCTCGTCTTGGAACGGTTACCA
AGGTGATTATCTTCCTTGAGACATACAATAATTTCCCAATGAAAAGTATA
CACCTCTAAGAAATTTCGTTGGTTGAGTTTTCATAGCATAATTTCCAAAA
CGAGGCTCAAATTGTTCGAAGTCTTCTAAGGAATAAGCTCCGACAATCTA
AGTTTTAAGACTTAGGACCTTAGGACCTCAGGATCTAAAAGCTCAAAAAT
GTCCCAATAAGGCTGAGAATATAGCCTGCCCAAATCGGAAATCCAATGAA
ACAAAGTAGAAGTATTGAAACTGCAATTCTCGCCCGACCTTTAAATTTTC
AAAACCAAAAGTGCCGATATGTTTCGGCGCCGATTGTAGAAACAATTTTT
AACAGTAGTTTCTCTAAACTGGTCGCAGAAAGAACACGAACACTTATCCT
CTGAAAATGTTAACGTGCAAAGGACACTATGATGAAGACTGTATTATCAT
CACAATTGTTTTAGCCTCAAATCAACATCAAGAAAGTGAACGACCGAATC
AAAGACAAGAAAGACCAACAAGAAACGTCGAATTTCAACTTGGATACTTT
ATGGATCAACAAATCGAATTCCTGAACAACAAGAAAGTTGCTCGTTGTGA
TATCATCGTTTTCAATAAAAAACCCGTGAGGTTCTATTGTGTTTCTGACT
GTGTCGACCCAACGACGGCGATAGATTTTGAATTTTCGATACTTCATCGT
CAATGGATCACAACTCAATTTAAAATTTTAACTAAAGATCTTAAGGAAGG
TCGCGTGTTTCGAGTTATCCCTGTTAACTGGGATCGACGTACAGACAAAG
TCAAATGGATGAGAAGATCAAAATGTTCAAGAGAAATAATTTACGATTCA
GAACCAAACTGTGAATACTTGCTTCATCGGATTCGTAGATCTGTCTACCA
GACAGGGTGCAAACCATTGATTGTTGATAATCTGTTTGGACTTTGGACTT
CAGAAGAAATTAACCAGTGCAGCATTGAAAGCTTTGGCGATGAATCAGAA
CTAGATTTCTCCTCAAACTGTTCCTCGTATGCATGCACTCCCACCAAACT
TTCTGTCACTGGCTCCCCTATAGCGACACCGACACCAATGAGCCCGATTG
TAAAAGCAAGAGAGCGAATGCTAAACCTTACAAACAAATCAAACCCGCCA
TCTCCTTTGAGGAGCCGCATGAAACGCAAATATTCAATCAACTCTCCTAT
TAATCAAAGTCCGAAACTTTCGACTCTGAAAATGTCACCACTAGCCAAAC
GCTTAAAGACAGAACATAGCACTCCTCGCGCATGCGTAAAGCAAACCAAA
GAGAAAAATGGATCGATTAATCGAACCAAATGTGATAAAAAACTCCCTCC
GTCTCCTCTGATTCACGAGTCAACTCTTCCCAAAAGACAATCAGCGGTCA
ACGCTCGTAGAGAAATCAATTTCCAATTGGCAATCGACGAAGATAATATC
GAAGTTTACGATATGAAAGAAAAAGAAAGACAACATTGTTGAAACAGACA
CAATTGAGTAAACTAAATTAATCATTAATTCCCCTATGCCAATAGCCCAA
TTAGGATCTTCTTCTTCGGATTAAACTTTGTTCTCCAGGGGACGTTACAA
TGTTAATAGAAAGGATGGTATCCGTACCAAAATGGACCTTGACATGACAT
CCTTTAACGGATTAGTACTTCTACACACATTACGGTTATTGTTTTTACTA
AATTTGGAATTCAAAGATAATATTTTTGGCAGCTCTGACTTAAATTGAAT
TTTATTTGAATAGAATATTTCGAGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002032XLOC_002032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003671-exon-sc0000030-1575043694:758298..758981TCONS_00003671-exon-sc0000030-1575043694:758298..758981Clytia hemisphaericaexon
TCONS_00003671-exon-sc0000030-1575043694:757691..757981TCONS_00003671-exon-sc0000030-1575043694:757691..757981Clytia hemisphaericaexon
TCONS_00003671-exon-sc0000030-1575043694:756811..756891TCONS_00003671-exon-sc0000030-1575043694:756811..756891Clytia hemisphaericaexon
TCONS_00003671-exon-sc0000030-1575043694:754955..756267TCONS_00003671-exon-sc0000030-1575043694:754955..756267Clytia hemisphaericaexon
TCONS_00003671-exon-sc0000030-1510915933:758298..758981TCONS_00003671-exon-sc0000030-1510915933:758298..758981Clytia hemisphaericaexon
TCONS_00003671-exon-sc0000030-1510915933:757691..757981TCONS_00003671-exon-sc0000030-1510915933:757691..757981Clytia hemisphaericaexon
TCONS_00003671-exon-sc0000030-1510915933:756811..756891TCONS_00003671-exon-sc0000030-1510915933:756811..756891Clytia hemisphaericaexon
TCONS_00003671-exon-sc0000030-1510915933:754955..756267TCONS_00003671-exon-sc0000030-1510915933:754955..756267Clytia hemisphaericaexon
TCONS_00003671-exon-sc0000030-1491911889:758298..758981TCONS_00003671-exon-sc0000030-1491911889:758298..758981Clytia hemisphaericaexon
TCONS_00003671-exon-sc0000030-1491911889:757691..757981TCONS_00003671-exon-sc0000030-1491911889:757691..757981Clytia hemisphaericaexon
TCONS_00003671-exon-sc0000030-1491911889:756811..756891TCONS_00003671-exon-sc0000030-1491911889:756811..756891Clytia hemisphaericaexon
TCONS_00003671-exon-sc0000030-1491911889:754955..756267TCONS_00003671-exon-sc0000030-1491911889:754955..756267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:754955..758981 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.399123	0.191115	0.376139	0.183487	0.234867	0.282133	0.228509	0.120569	0.114298	0.271698	0.110316	0.223501	0.0984807	0.0977115	0.209178	0.11864	0	0.10279	0.244512	0.126436	0.397113	0.366111	0.202495	0.169918	84.2572	37.447	0.382856	0.294615	0.285701	0.155804
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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