TCONS_00003623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003623
Unique NameTCONS_00003623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003623 ID=TCONS_00003623|Name=TCONS_00003623|organism=Clytia hemisphaerica|type=transcript|length=802bp
AAACGATTGAGAAACAGAAGAAACTTCAAACAGACTTACAAACTAAAAAT
TCAGACTTGGAATCAGATGTCACGTCTTTGAAAAAGGAGCTGGATGGTAC
CAAACGTTCAAATAAACAATCTTCCGCAAACAGAAACACACTTGAAGTCA
GGTTGAATCGTGCATTGGAAGAAGTTGAAAAGTATAAACAAGCTCTGAAA
AAATCCAAAGAGTCGACAAAGGCTGTGAACGATACTGACAGAAAATGTTT
GGACCaattacaaaatgaaaataaacgtTTGGAGTCACAAAAGAACGACC
TCATGATCGCAttcaaaaaacaattgaaacttATTGACATTTTGAAACGA
CAAAAGatGCATATCGAAGCAGCAAAGATGTTGGAATTCACTGAAGAAGA
ATTTATTCGAGCTCTCGATTGGAATAATACCACGTGATAGGACCTTTCCC
ATAGAAAGATTATGTTTTATCTCTTTTTATCAATAACTTgaggtttttct
tttatttaaccTTAAATCCTTCTAGCATCTTCTAGGGGGAAGCATCTTGG
CGGGGGAGGGAGGCAAGATCGACAAGTGATATGACCGTGAAGGGTTAACA
CTTGCAACAGTCGTGATGTAAAACTTGTCAGAAAAGGACAGGGTCACTGG
TCACTGCATGTCTcacttcttttcttttaaaaccGATAATTCAAGAGGAA
AATTGTACATTTTGTTAATTTCTAGAGATtttatttgtgaatattttttt
tttcaatgtgtaAAAGGATGATGTAAATTTAATGGAAACTTCTAAACAGG
GT
Run BLAST on NCBI

transcript from alignment at sc0000030:345020..352669-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003623 ID=TCONS_00003623|Name=TCONS_00003623|organism=Clytia hemisphaerica|type=transcript|length=7650bp|location=Sequence derived from alignment at sc0000030:345020..352669- (Clytia hemisphaerica)
AAACGATTGAGAAACAGAAGAAACTTCAAACAGACTTACAAACTAAAAAT
TCAGACTTGGAATCAGATGTCACGTCTTTGAAAAAGGTAAAAGATTGTTT
TAGTATACTCGAACCAGGCTTAAAGTTTCAGGAAATTTGAACGTTGTCTT
TTGGGCTGAACAGGACAGGATGAACATTAGGGTAATGGCAGGATGTAATA
TCCATTTTGATGTTAAACTTGGTTAGTTAGATACTGAAAAAGGATCGAGA
TTTGAAGGATCGAGATTAGCNTACCAAATACCGTATGTGAAAATTTTGCC
TAAATTTAATCTCCTGTCTCTTTTTTATACACAGAAGACGATTGAGAAAC
AGAAGAAACTTCAAACAGACTTACAAACTAAAAATTCAGACTTGGAATCA
GATGTGACGTCTTTGAAAAAGGTAAAAGATGTATACTCGAACCAGGCTTA
AAGTTTCAGAAACTTTGAACGTTGTCTTTTGGGCTGAACAGGGCAGGATG
AACATTAGGGTAATGGCAGGGGTAATATCCATTTTGTTGTTAAACTTGAT
TAGTTTTAGATACTGAAAAAGGATCGAGATTAGCAGGATCATCAGCTATT
TTAAATTTTTTTTTTACTTTTATCAATTAACAGTCGATCGTGTCAATGAA
GAATGGGCTTTTCCAGAAAAGAAATTTACCCCCACTATTGAGGATATTGA
TTTTTCGAAGTATCGAACCCCCTCTATATCCTACTTTATTAATAAAGACC
CCCTGGATATCCACTCTTAAAAATATGCTCAACTCCCTGGATATCTTCTC
TTATAGAGATGCTTTACCCCTGGATGTCGTATGCTTTACTTGAAAAGACA
CTTTACCCCCCTGGATATCCGCTCCATTGTAGATATTTAACCCCTTGGAT
ATCCACTTTTGAACAAAAATCGTTAACCCTCTGGATATCCGACATCCTCA
AAAAGGGGGGCGGGGGGTACGGACTATTTCTGGAAAAGCCCAATCTATTA
GGTTAAAGCTGTGATAATGAGAGCTACAAATGGCATCATTAAGATCAACA
AGATAAAGATAATCAAAAAACATCGACAATATGTATACCGCTTCACTCTC
TTAAGATGTGAATCTCTTAAAGCATCTCCAGGATTTTTTAAAAACCTTTT
TATTAATTTTTTCTTATTTCTATCACCATAAATATCTTGCTTTATTTGTT
CAATGATTTTCTCCAGCCATTGCACAACTTTATCGTGATTTTCGTTTACG
TCGCGTATTTTTTCCGCTAGAGGTCCTGTCTTTGAGCAATATCTACATGT
CGTCGCTAACTGACATAAAGTCTTTTCCCAGTCATCCATTACTAAAACAG
TGAGGTCTGTTATATAAGCTGAAAATTCGTGCACACTTATCAAAGTCTCA
TCAAAATGTAAATTAATTCTTGATAGGTTTTGAAATGGTTCACGTAACTT
GTCTGCATATTTGTAGGGTATCATTTCACAATTAAAATTGACCCGAGTTT
TCCAGGCTTCCATTTCATATATGAGTCGTATTATTTCAACATAGTAGTTA
GCGAGGTAATCATTAAGAGTGCTATTATCTTTGGAATTTTCAGGTATGTT
TACTAAGACTTCCTGGTCCTGATAACCAGAGTTGATTTGGATGCTCATCT
TATTTCTATTTTTGATTTTATCCCATTCTCTTTTATCAACCAGCTTGTAT
ATGTTTTGTTTTGGTACAAAGAAGTTTGGTAAAAATTCTTCAGCTATCGA
TTTTTCTAAATGATTCCACACCTCATTGTAAAAACTCTGGACTTTCAATT
CTTCTGAAGATAGATTCTCTTCTTTGAATGACATTGCGACAGCCATCAAT
GCAGTTTTCAAGAAATAAGACGGTATTTCTTTAACAGTTTTTTCAGTTTT
CAAAGAATATTTCAGATTCAAGAACGCCTTTCTTTGGTAAGGTGCCAAGT
TAAGTAAGATTTCTCCTTCTACTAACGAGAAAGATATTCTCCATTCAAGT
TTAGCCAGTGGACTTCCTGGAAAACTTTTTGCAATCAAAAACAAAGGAAT
ATTCTTGAAAACATCGATTTTTGACTGCATTGGAAAATCTTCCATCAATT
CTTTCGGCCATTCATCTAAACGTAACCCAATCACAAAATCCTTATTCGAA
TATCTGATAGCAGCATGCGTTTTCGATGTCTCCTCGAAATCGTATTGGTT
ATTTTGGTGAGCATCTTGGCCAGTCAAAAATAAAGGAGCTAACTTCTGCT
GAACAATCTGTGGATATAAAAACATTCCATTTTGATCTTCAATAGTGTAA
AATCCAGGGTTCTTAGTCTGTTTCCAGTAAAAACATTCAAATTTTCGGCG
AAAATCACGGACGATCCCAGGGCCAATCTCGTATAGATAATCATAATCAG
AGTCATCTCGGTATAAATATTCAGCGCGACTTCCTGTTAAATATTTGGTA
ACAAGAGTTGGAAATAAAAGTCTAGATGGCTCATACCCGTTTACTGTAAA
GGGAACAAGTTCTTTTTCAGTCAGTTTATTCTTAATGTTATTTCTGCTTC
GTAACTCTTTTTCACTTGATCAAAATCGATTTCACTCATTTTCAGCCCTT
TTCCCTCCATTTTTTCTACAAATGGTACGTACTTTCGAAAAAAAATCCGT
TTCTTTTTTCTAACAAAGTTCAACTCCTTATTTTGCTTTCCCCGATTTAA
TTTAATAAATATCATTATTCATTTTAACCAACAATTAAATTTTAGTGCAC
ATACTATATTATGAATCGGCAAAAGAAAATCCTTAAAAATTTAACCTGTC
GAAGATGATATGTTATGAAATTGCCAAAATAACGTTGAAAATTTAACCTG
CTGTAGATATTGAATAATTTAACCGAATTAGTTATTAAAAACCATTCATG
TTTAAGAATTATTTCCCAGAAGTAGTAATAAAGTTATGATATTGCTCATC
TTGTAGATTGTTGACTAACTAGACATTGAAATGCTTATTCGAAATTTACA
ATAAAGATCAAAAGATTTTTCTCACGTAACGTGTCAATGACTATTTTGTT
CAAAGCAGGTTAGGATAGAACAGGCTAGTGCAAAAACAGGCTAGTGCAAA
AACTGGCTAGTGCAAAAACAGGCTAGTGCAAAAACTGGCTAGTGCAAAAA
CTGGCTAGTGCAAAAACTGGCTAGTGCAAAAACTGGCTAGTGTAAGAGCA
GGCTATGTCCAAGAAAAGGCTAGTGTGAGAGCAGGCTAATGGAAAAGCAG
GCTAGTACAAAATTTGCAAATGCTTTTAACCCTAGACTATTTTAATCTAG
TTCAGAAATGTACTAAATAAAATGATCAGTTGTCTAAGAAGAATAGCGGG
TTTATGTATTTGCAAGAAATTAGAACCTTACCGTCTCCGTCGCAGAAAAA
CACACCTACATAAACTAAACTCGGTATTGTCCTTTAGATAAACATTGTTC
TGTCGGAACTCGGGGGGGTCATATGGTCCGACCCGCGTCATGTGCCGCCC
TTAAGGGTAGGTTTATCGAGACCCTCGGAATACACTGTAAGGTAAGTGTA
CTTTTGATAGAGTGCACTACAAGGGTCCTCCTTTAGCTGGATTCAATGTA
AGGGTGTGTTTGGGGACTACTGAATTGCAAGACTGACAATAAAAATCTGA
TGTATATCAAAATGTACTCTTAGGTTCCAAAAAAACAGGGGGGGTTAGAA
AATTTTCGATATTTTAATAAACGGGAGGGGGACCTAATTGCCGGAGGGGG
GGCTTGCAAATTGTACTTCTGAACACCCAAGAATAAGGTAAATGTAGGCT
AAAATCAGGCTATTTAGAGCAAAATAAGGGGCCTTCTCGTTGACAGCTGA
AAATATTCTTAAAAATTGATAAACCGGGGGGGGGTCCTAATAAAGTACGG
GGGGCGTTTATTTGGAACCTAAGAGTATAGTATCAAAAGATATGCGATCA
AACTACACTGTAAGAGTCAGAAACTTTCAAAAATGCACTTTAAGGGTATC
TTTTCACTGCTCAAAGGCTGCACTATAAGGGTCCGATTTTGAAAGCCATT
TTTTTGGTGGCACATGCCGTCGTTTAGAAATCGAATCCCCCCCCTCGGGT
GTCGAAATTAAAACGTATTTGCATTCTCTTTTTTCGTTTTTACAGGAGCT
GGATGGTACCAAACGTTCAAATAAACAATCTTCCGCAAACAGAAACACAC
TTGAAGTCAGGTATGCACCTTTTTCAACTTCAGGTCACTTAATATTTCGA
TTTAATTTCTGAGAAAATTGCCATGACTAACCCTATTATTATACTTTTCA
TTTATGCAATGGGCTTTTCCAGAAAAAAAATTTTAATATGGGGGGTTGAG
GTTATAACTTTTTTTAGAAATTTACCCCCGGATATTGACACCATGTACGG
ATATTTTCTGGAAGAGCCCATTGGGTCCAGGGCTATCATCTTCTATTATT
AGATCTAAAGGCTTTTCCTTTATGAGATGGTATTAGGGCTCGAGCCTTAG
CAATCTCACGTTTATCGCTTCGTAGTACACTCTGTGCGCATTGTATGTTT
GATAAAGAAATTCCCGTACATGGACTTCTGCGATGAAGTATGATCTATAA
GTAACAACGCTTCTCTTATCGCCTCCCCTCTCTCACCAACACTCCATAGC
AGCGGTCGGTTTGAAAAATCTCAAATGAGAAAAGGCAATGATAACGACCT
AATATGGCAATGAATTTTGAAATTAGCCGTAGATACTGGGCCTGTGCACA
GACAATCAAAGGGCGCTTTTTTTAAAATGTTTCAGGTTGAATCGTGCATT
GGAAGAAGTTGAAAAGTATAAACAAGCTCTGAAAAAATCCAAAGAGTCGA
CAAAGGTAAAACAGAAATGAATACACGCTTTTTTATCATAGATATTCTTC
AACGTTTTGGGAAAAATCTTCCTGAACTTTTCTCAAGGGTATTCTTAGGT
TAGGATCCAAAAGCAGTCTAAATCTAACATGAAATACATACTTCGAGAAA
ATTTTTGGCATTCTTGTGAAACTTTCAGCATTGCTGGGAAATAATTGGAA
ATTTAATGGTAAAATGCTTTAGATATTGATTTCTTAGGTTCAGCTGCCGA
ATTCCATGATGGTGGTATTTGGGCAATTTCATCATGAATATTCTTATAAA
GTAAATTCTTATGAAAAGAAAGGGTGTACGAGAGTATTTTTAAAAGGTTT
TTGTGACCAGGAAGCCTACAACGTCTTAGATTGACACCTGGCAGTCCCCA
AACGATTTAAAGTACCTGAAAATCGGACCGGTCTTGGTACAGTATTATGA
GCGATTTAGTAGCGGTCAAGTTTTTGTTTTAGACTTCAGACCTTCTAAAA
AATCTGATTTTGAACCGTCCTGACCGCTCGTAGACCCTCGTCTTTCACAT
CAAATTTAGCTTAAAAATGACCACTTTTGTTTGTCGCAACACAACTGTGT
ATCCCCCACTAATCAGTCGGCAAGACACCGTTGATTTGCAGTAAAGAGAT
CTTTGAGCCGGAGGTTTGTTAGTAACGATAACATGAAACAAATTATTAAA
GGATGTCAACCGGTCGATTGATGTCAGTCTGGGACTGGACGCATCGAAAC
GGCTGCTGAATTAAATGCATTCGTAACAGTCATTTAGCGACCCTCTCAAA
AAAAGTCCATTCTGAAGATTGTTCCGATTTTCAAGTACTTAAAATCGCTT
GGGGAGTCTCGTATAAGCGTTGGGTTTTACACGGGCAAATAAATTAATTT
GAATGGACTTTTAGTCAATTTCTTGTAAAATCTTTCGATCTATTCATGAT
ATGCACCATTGCAATGACTTCACAAAATTGTGCAACTTTTCTGTCTTTGT
TCCACCCAATACGTCACTTTTTCTATTGTTTAAGTGACATATTGGGTGGA
AAATTTTGAAAATTTTCAGAAGACTCTCCAGTGGTGCATATCATGAATAG
GATGTTTTTTTTTCATATTACAGGCTGTGAACGATACTGACAGAAAATGT
TTGGACCAATTACAAAATGAAAATAAACGTTTGGAGTCACAAAAGAACGA
CCTCATGATCGCATTCAAAAAACAATTGAAACTTATTGACATTTTGAAAC
GACAAAAGGTTTGCTACAAATTAGAAATGGTCCGAAAATCTTTTCTAATC
GACCTTTTCATAAATTACGTCGCGAACATCGCTTGCCTCGTATTCAAACA
ATTTCCATGGTAATCATATCCCTTGAGATATTAAATGATTTTTTTATGAA
TAGAAAGTGGTTGTAATAAAATCATCTAGGAGTTAATCACCATGGTAATA
ATTTCAAAAGGAGGCAAGTGACGTTCGTGATGTAATTTATGAAAAGGTCT
ATTTAGTTACATTTCTAAATTATTTTACCATAGTACGTTTACAAATGAAA
GTTGGATTTTTTTGAATTTCCTGAAACAATTGCAATAGTCGAGATATATT
GATTTTGCTAAATCATATTTACTCAAAATGCCAAAGATGCAGGGTGGATA
CGACGATGCCTGCAGCGACCGTAGATCAGTCGTAGAGCATCCGGCTAGGT
CGTTGGTTCAACTCTCGGTCGGGTCATACGGTACTAAAGACTTCGTACTT
AGAACAAAAAATGATTATTGATGCCTCTCTGCTTGATGCTCAACAATTAA
GAAAAGGATCAAGGGTAAGCGGAGCAATCCAGGGAGAACGAGTGCCCCCT
ACCATTTGGTAGATAGCTATCGAAAGAGGAGCTCGTAGACTTACTTTCGT
ATGATAGAGAAATAGAGGAAAATTTCTTTCTCTAGATGGATTCTTATATT
GGGCTCTTCCAGAAAAATGAAATTTTCAGAAATGTTTTTTTGTATTTGGG
AGTGGAGGATATATATAACAATTTTCAATGATATTCCCCCCCCCCCGGAC
AAAATTACTTTTGGCCCCCGGACATTGGGTTTTACCCCCGGACAAGCATC
AGTTAACCCCCGGACAAGACAAAGTTTGATATTTTTTTGCTACCCCCCCC
CCGGACAAAATTACTTTTGGCCCCCGGACATTGGGTTTTACCCCCGGACA
AGCATCAGTTAACCCCCGGACAAGACAAAGTTTGATATTTTTTTGCTACC
CCCCCCCCGGACAATATATCCTCCACCCGGGGTGTACGGACATTTTCTTG
AAGAACCCATAATTATTGCTTGATTTTACTAAGGAATTTCTTTCTTTTTT
TTAGATGCATATCGAAGCAGCAAAGATGTTGGAATTCACTGAAGAAGAAT
TTATTCGAGCTCTCGATTGGAATAATACCACGTGATAGGACCTTTCCCAT
AGAAAGATTATGTTTTATCTCTTTTTATCAATAACTTGAGGTTTTTCTTT
TATTTAACCTTAAATCCTTCTAGCATCTTCTAGGGGGAAGCATCTTGGCG
GGGGAGGGAGGCAAGATCGACAAGTGATATGACCGTGAAGGGTTAACACT
TGCAACAGTCGTGATGTAAAACTTGTCAGAAAAGGACAGGGTCACTGGTC
ACTGCATGTCTCACTTCTTTTCTTTTAAAACCGATAATTCAAGAGGAAAA
TTGTACATTTTGTTAATTTCTAGAGATTTTATTTGTGAATATTTTTTTTT
TCAATGTGTAAAAGGATGATGTAAATTTAATGGAAACTTCTAAACAGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002015XLOC_002015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003623-exon-sc0000030-1575043694:352584..352669TCONS_00003623-exon-sc0000030-1575043694:352584..352669Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1575043694:348460..348524TCONS_00003623-exon-sc0000030-1575043694:348460..348524Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1575043694:347815..347884TCONS_00003623-exon-sc0000030-1575043694:347815..347884Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1575043694:346562..346696TCONS_00003623-exon-sc0000030-1575043694:346562..346696Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1575043694:345020..345465TCONS_00003623-exon-sc0000030-1575043694:345020..345465Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1510915933:352584..352669TCONS_00003623-exon-sc0000030-1510915933:352584..352669Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1510915933:348460..348524TCONS_00003623-exon-sc0000030-1510915933:348460..348524Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1510915933:347815..347884TCONS_00003623-exon-sc0000030-1510915933:347815..347884Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1510915933:346562..346696TCONS_00003623-exon-sc0000030-1510915933:346562..346696Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1510915933:345020..345465TCONS_00003623-exon-sc0000030-1510915933:345020..345465Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1491911889:352584..352669TCONS_00003623-exon-sc0000030-1491911889:352584..352669Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1491911889:348460..348524TCONS_00003623-exon-sc0000030-1491911889:348460..348524Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1491911889:347815..347884TCONS_00003623-exon-sc0000030-1491911889:347815..347884Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1491911889:346562..346696TCONS_00003623-exon-sc0000030-1491911889:346562..346696Clytia hemisphaericaexon
TCONS_00003623-exon-sc0000030-1491911889:345020..345465TCONS_00003623-exon-sc0000030-1491911889:345020..345465Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:345020..352669 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.64083	3.42718	11.1853	10.0049	0	0.310121	0	0	3.63692	2.50903	2.89637	2.06759	0.851761	1.94889	2.64747	2.13959	1.20686	3.13583	2.81194	2.43497	3.48991	2.02588	1.78432	2.14718	0	0	4.28438	2.13657	1.43957	1.28872
Blast
[Close]
BLAST of TCONS_00003623 vs. Swiss-Prot (Human)
Match: TEX9 (Testis-expressed protein 9 OS=Homo sapiens GN=TEX9 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.281e-38
Identity = 69/125 (55.20%), Postives = 100/125 (80.00%), Query Frame = 3 
Query:   57 LESDVTSLKKELDGTKRSNKQSSANRNTLEVRLNRALEEVEKYKQALKKSKESTKAVNDTDRKCLDQLQNENKRLESQKNDLMIAFKKQLKLIDILKRQKMHIEAAKMLEFTEEEFIRALDWNNT 431
            L+  ++S+++EL+  +R  KQ++++++  EVRLNRALEE EKYK  L K +++ K + + + K ++ L++ENK+LE QK +LMI FKKQLKLID+LKRQKMHIEAAKML FTEEEF++AL+W N+
Sbjct:  267 LQQQLSSVERELENKRRLQKQAASSQSATEVRLNRALEEAEKYKLELSKLRQNNKDIANEEHKKIEVLKSENKKLEKQKGELMIGFKKQLKLIDVLKRQKMHIEAAKMLSFTEEEFMKALEWGNS 391
The following BLAST results are available for this feature:
BLAST of TCONS_00003623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TEX91.281e-3855.20Testis-expressed protein 9 OS=Homo sapiens GN=TEX9... [more]
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