|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003611 ID=TCONS_00003611|Name=TCONS_00003611|organism=Clytia hemisphaerica|type=transcript|length=3425bpRun BLAST on NCBI protein sequence of TCONS_00003611-protein >TCONS_00003611-protein ID=TCONS_00003611-protein|Name=TCONS_00003611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp MSSKDKDQQKRGRKWRFSRKKMKEPTQVDTITLPFDLKVLLDKENINLKPRun BLAST on NCBI transcript from alignment at sc0000030:276868..292948- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003611 ID=TCONS_00003611|Name=TCONS_00003611|organism=Clytia hemisphaerica|type=transcript|length=16081bp|location=Sequence derived from alignment at sc0000030:276868..292948- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:276868..292948- >TCONS_00003611 ID=TCONS_00003611|Name=TCONS_00003611|organism=Clytia hemisphaerica|type=CDS|length=20412bp|location=Sequence derived from alignment at sc0000030:276868..292948- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00003611 vs. Swiss-Prot (Human)
Match: AKA10 (A-kinase anchor protein 10, mitochondrial OS=Homo sapiens GN=AKAP10 PE=1 SV=2) HSP 1 Score: 208.379 bits (529), Expect = 3.825e-56 Identity = 130/395 (32.91%), Postives = 207/395 (52.41%), Query Frame = 3
Query: 576 SRNTFEQPLPRQSSTTLRSYEDFKSRAKSRNAIVDAVEIYTKYISLDAEHPINLSSEDRHLIEASICKGDNQLDPSCFAQAQDFAFGKLES-FYEDFLSTTYMIAYQLHVLEEKELKFQDVLYDEPILFYFLEFLDGYKAKSVYEFYIIGENFEEDIERKLKDDCYELEEAVNDAMHIYERYFSMKCEQQLIADDKLRIVLENNICRDDGPQSNCFCIPMAYAWTALSEVYLPMFVKSNMYESYQNHLKKTLRYTE----DVKXXXXXXXXXXEENFPLVENRPSPNNTIERSESKL--NLFEETNLEDFWFKPLNRHSELGASRLTLGHVNEFGVFCSGMEEQPLDDKDNDASXXXXXXXXXXXXXRGETMEETEELAWKRARKIIDDIQKQTQ 1739
SRN+ PL S ++S E DAV +TKYIS DA PI ++ R+ I A IC D Q+DP+CF AQ F +E + +FL + + YQ+ VL + D+L+ E LFYF E+++ A ++ +F++ +NF+ + K Y+ +EA NDAM +Y++YFS++ L DD +R+ +E+NICR+ GP NCF P+ AWT + +V+LP F+ SN+Y Y N L ++R E +V + S +E+ P + + ++++++ K+ N E ++ P + + A ++T G V++ G F E +P D S + MK ++G T E EELAWK A+ I+ DI +Q Q
Sbjct: 275 SRNSPASPLKELSGKLMKSIEQ------------DAVNTFTKYISPDAAKPIPITEAMRNDIIARICGEDGQVDPNCFVLAQSIVFSAMEQEHFSEFLRSHHFCKYQIEVLTSGTVYLADILFCESALFYFSEYMEKEDAVNILQFWLAADNFQSQL--AAKKGQYDGQEAQNDAMILYDKYFSLQATHPLGFDDVVRLEIESNICREGGPLPNCFTTPLRQAWTTMEKVFLPGFLSSNLYYKYLNDLIHSVRGDEFLGGNVSLTAPGSVGPPDESHPGSSDSSASQSSVKKASIKILKNFDEAIIVDAASLDPESLYQRTYAGKMTFGRVSDLGQFIRESEPEP----DVRKSKGSMFSQAMKKWVQGNTDEAQEELAWKIAKMIVSDIMQQAQ 651 The following BLAST results are available for this feature:
BLAST of TCONS_00003611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.