TCONS_00003602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003602
Unique NameTCONS_00003602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003602 ID=TCONS_00003602|Name=TCONS_00003602|organism=Clytia hemisphaerica|type=transcript|length=2703bp
AAATcattttaaactaaaaaggaCCTGTGTAAGTAGTGGGACCTTAATGT
TAATGTTATAATGCACCCTTTGAAGCTTTAATATTTATAGTATCTTTTTT
TCGTTTAAGGCTAgaaataaatagaaaataaatccaaaatgtCAGGTGGC
TCAATTGGTGTTCCTATTAAAGTTCTTCACGAAGCTGAAGGCCATGTTGT
GACGTTAGAGACACTTACAGGTGAAGTTTACCGTGGAAAATTATTAGAGG
CTGAAGACAATATGAACTGTCAAATGATCAACATTACCATGACTGCACGA
GATGGTCGTGTCTCACAGTTGGAACAGATTTTCATCCGAGGAAGTAAAAT
TCGTTTTGTTATCTTACCTGATATGCTGAAGAACGCTCCTATGTTCAAAA
AAATGATGATCCAAAAAAGTAGTGGTGTTGGCCGTGGAAAGTCTGCACTA
CTGAAAGCTCAAGTTGCAGCGCGCGGTCGTGGAACGGAACGTGGAGGCTC
AAGAGGCGGATCCAGAGGATTCTTCCCAAGAAGACGTTAATGTAAACGGG
GCTTTAATAGACACTTTTGCAAAACTAAAAGATAATCGACATATTGAATT
TGATGGTGGACATTGCATCATGGACATTTTTTAACATTCGTCAAAAGTGA
GAAGGAAAAACAAGACACTCGTGTTTAAATAATTCAATTTAGAGCATAGA
GACATCTGAACGTTTTAAGGCTTGGAGCATAATGATACCAATTCTTTGTA
AATAACCGATTGGTTTAGAAGTACCTAATTAAAACGGTATcctttttatt
gtttatttttatcttttgattttAAAGCGTTATACTATCAGTGACGGAAC
GTTGGTTATTGAAAGATAattaataacatttttttacattttaaaataaa
acttatCTCGATGGCCTCCTTCTGATCTACCTTAAAGGAATTTTTGTGAT
GACTAATTTTAGTGAAGGATATCGAcaacttattttggcaattacatgat
tttttgattttggcgaatgacaggaTACCAGttccatttaaaaaaatcag
gggtttgatttttttaattacacaaaaaattaatttcggTGAAGAcagaa
attttagtttcaatgaggagcaatagaccttttcataaattacgtcacga
gcaacgcaAAAATGAGGTGATTTGAAAATGGGTCGATTTGAAATGGAAAT
GGGTCTATGAAAATTAACCTAATTAGAAAACGGATGTGacaaattaaaat
gaaaataaaacttttactcaaatcaatatttttcatcaaagttttcttAT
TTCGAAATTAccaaaatgatatttttaaatatagCGATAAATGGATAAAC
TATTTACATAATATACATCTTAATGTTTACAGTACAAAatattgtgtttt
gttttttgcaaaaaaaaatattagttttAAAAGAATTGTCAATTAAATGA
CATCACGGAATAGCTAATTGGTAATTGCTGACGGGGACAGAATTTGCCTT
TTTTAACGTTACTATTGCAGTAATTGTTCTAAGTTTTGGAAGTAGGAAAC
AAATGaaacttgtttccctgatattACTAGTAGGAAAATAGAGAAGCATA
AACTTAAAATCacccttgaaaaaaaaaacaaggaaaaatctaaatttaca
CTAAATTTAATCTTGATAAATCTGACGAAAAATTTAGGCTATTCTTTGAC
AACTTATGATCATGGGGAGAATAAGCTATTTAATCTGATAAAACATATAA
GGCTAATTTCTGGCCCTAATTGATCGCGTGATTTACGTCAAAATTGAGTT
TATTTTCAAAGTATCAAAAGCAAAATTGATGACCAACTCatgaaaagttt
tcaatttaGTCCTATCCTTTCCTACTCTGTGAAATCTCGCAAATGCAACg
actgaatttcaaaattctttgtaATGTAAACTTGGTTTTGTGTGAGCCGG
CTGGTTTGTGTAAATCAGCCTTTAATAAACGAAAGGATTTTAATCCATTC
AATGTATGAATGATACCCCAGCTTAAGTTATTTCCCAGTCTCTTTTAGTA
CCCCTTTtataacttttcattttttgattttcagtttttcCAAATTCTAt
aatattataaatattttaatcatACAAATCTCTGCATCCTTGAAActtac
atgtttttataagcatgtgAAGACTCAGTTTTCGGTACTCAAACAATTAC
TCTATAAAAACATGTATGTGGAGAGTCTACTTTTGCATATGAGAGAACAT
ACCGGTTCCAAAGAAATGTTTATAGCATTTACAATTTTTGCCAGAGCACA
ATCCAATTGATGAAGAGTGTGAACTACATCCTTTGGTGATCGCTTGTCGG
TTCTTCGCGCAATGAGTACAGTTGCATCGAACGCATTTGCATAATCCGGA
GTTTCTtcgttctttcatttttttgacgtgtttGTTTGGTGTCTTGCGGT
GATTGTCTGCGACTCGGCGCTTCAGGATGTGTCGCTGTGTTGTTTTGTAT
TTTGTCGTGTCTTGTGTGATTTGTGTGTTACGATGGTCTTCACTTTATAA
TTTGTGTAGTTTTACTGCAATTGAGTTGCTTAGAACGATACAGTAACTAG
TTGTAACCTTTTGATATTTTGCGTTGTTTTCCCCGCTTGATTCTAACTTC
TATAACGCTTGTCTGTCGCTATGTATAACAATTCGTTAGTAGAAGTGTTG
CTT
Run BLAST on NCBI

protein sequence of TCONS_00003602-protein

>TCONS_00003602-protein ID=TCONS_00003602-protein|Name=TCONS_00003602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MSGGSIGVPIKVLHEAEGHVVTLETLTGEVYRGKLLEAEDNMNCQMINIT
MTARDGRVSQLEQIFIRGSKIRFVILPDMLKNAPMFKKMMIQKSSGVGRG
KSALLKAQVAARGRGTERGGSRGGSRGFFPRRR
Run BLAST on NCBI

transcript from alignment at sc0000030:199593..203081-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003602 ID=TCONS_00003602|Name=TCONS_00003602|organism=Clytia hemisphaerica|type=transcript|length=3489bp|location=Sequence derived from alignment at sc0000030:199593..203081- (Clytia hemisphaerica)
AAATCATTTTAAACTAAAAAGGACCTGTGTAAGTAGTGGGACCTTAATGT
TAATGTTATAATGCACCCTTTGAAGCTTTAATATTTATAGTATCTTTTTT
TCGTTTAAGGCTAGAAATAAATAGAAAATAAATCCAAAATGTCAGGTGGC
TCAATTGGTGTTCCTATTAAAGTTCTTCACGAAGCTGAAGGCCATGTTGT
GACGTTAGAGACACTTACAGGTGAAGTTTACCGTGGAAAATTATTAGAGG
CTGAAGACAATATGAACTGTCAAATGATCAACATTACCATGACTGCACGA
GATGGTCGTGTCTCACAGTTGGAACAGATTTTCATCCGAGGAAGTAAAAT
TCGTTTTGTTATCTTACCTGATATGCTGAAGAACGCTCCTATGTTCAAAA
AAATGATGATCCAAAAAAGTAGTGGTGTTGGCCGTGGAAAGTCTGCACTA
CTGAAAGCTCAAGGTGAGGAAAGAATATGATTTGACACCCTGTTCTCACA
GACCCACCGGGACCCCCTACCCGCTGGAAGAATTGGCCAAAATATCTTCC
CCATTGGGTAATTATATAACGAGAAAATAAGCAAATCGTTTTAGTCCATT
GGATGAAAATCCTATCGGGTCTTTAAGAAGGGGGTGTGATTTTGAGATGT
CAAAGACGTCATTCAAACAAAAGACGTATACTTTCGGTACATAATATATT
GATGGCCAAACGTTTTGGCAATATGTTGCATCTAGACCCAACGAATTTCT
GAAACACTAAGTCTGCATTCTGCCTCAAGAGTTCCTCCCTCTTTACCCAC
TAAGTATTACTTCATATTGCTGTAATTTCGACTCAGTGTGAACTTAATTA
ATAAAATCAGAGAATGAATGTACGCTCTGTGTTGTCCAAGTGATAATCAT
TGAGAAAATATACGAAAGAGTATTTATTGGTAAAAGAACCTGTTTCAGGG
CTACTTAAAGGGAAAATAAAAATTATTGGTTGTTTTCCTCAGCGTATAGA
CATTGCTAAGATTATTGAATGATGTTTTAAATCTGAAGCAGTGTTAAAAG
TTCTTCCGTCTCGATGATGTACACATAAAGATGCTTTCCCGTCTCAAAAT
CCTGCATAATTCACCAAAAGTTCAAGAATTATGTGCTAATTTGATGTTTG
AATTACATTTTCATAGTCTCGTACAAAAAATCTTGTTTTGACCACTGCTG
AAAATATTGAGTAATCATTCTGATTCCTCTCTCCTCTCTCTCGTTTTAGT
TGCAGCGCGCGGTCGTGGAACGGAACGTGGAGGCTCAAGAGGCGGATCCA
GAGGATTCTTCCCAAGAAGACGTTAATGTAAACGGGGCTTTAATAGACAC
TTTTGCAAAACTAAAAGATAATCGACATATTGAATTTGATGGTGGACATT
GCATCATGGACATTTTTTAACATTCGTCAAAAGTGAGAAGGAAAAACAAG
ACACTCGTGTTTAAATAATTCAATTTAGAGCATAGAGACATCTGAACGTT
TTAAGGCTTGGAGCATAATGATACCAATTCTTTGTAAATAACCGATTGGT
TTAGAAGTACCTAATTAAAACGGTATCCTTTTTATTGTTTATTTTTATCT
TTTGATTTTAAAGCGTTATACTATCAGTGACGGAACGTTGGTTATTGAAA
GATAATTAATAACATTTTTTTACATTTTAAAATAAAACTTATCTCGATGG
CCTCCTTCTGATCTACCTTAAAGGAATTTTTGTGATGACTAATTTTAGTG
AAGGATATCGACAACTTATTTTGGCAATTACATGATTTTTTGATTTTGGC
GAATGACAGGATACCAGTTCCATTTAAAAAAATCAGGGGTTTGATTTTTT
TAATTACACAAAAAATTAATTTCGGTGAAGACAGAAATTTTAGTTTCAAT
GAGGAGCAATAGACCTTTTCATAAATTACGTCACGAGCAACGCAAAAATG
AGGTGATTTGAAAATGGGTCGATTTGAAATGGAAATGGGTCTATGAAAAT
TAACCTAATTAGAAAACGGATGTGACAAATTAAAATGAAAATAAAACTTT
TACTCAAATCAATATTTTTCATCAAAGTTTTCTTATTTCGAAATTACCAA
AATGATATTTTTAAATATAGCGATAAATGGATAAACTATTTACATAATAT
ACATCTTAATGTTTACAGTACAAAATATTGTGTTTTGTTTTTTGCAAAAA
AAAATATTAGTTTTAAAAGAATTGTCAATTAAATGACATCACGGAATAGC
TAATTGGTAATTGCTGACGGGGACAGAATTTGCCTTTTTTAACGTTACTA
TTGCAGTAATTGTTCTAAGTTTTGGAAGTAGGAAACAAATGAAACTTGTT
TCCCTGATATTACTAGTAGGAAAATAGAGAAGCATAAACTTAAAATCACC
CTTGAAAAAAAAAACAAGGAAAAATCTAAATTTACACTAAATTTAATCTT
GATAAATCTGACGAAAAATTTAGGCTATTCTTTGACAACTTATGATCATG
GGGAGAATAAGCTATTTAATCTGATAAAACATATAAGGCTAATTTCTGGC
CCTAATTGATCGCGTGATTTACGTCAAAATTGAGTTTATTTTCAAAGTAT
CAAAAGCAAAATTGATGACCAACTCATGAAAAGTTTTCAATTTAGTCCTA
TCCTTTCCTACTCTGTGAAATCTCGCAAATGCAACGACTGAATTTCAAAA
TTCTTTGTAATGTAAACTTGGTTTTGTGTGAGCCGGCTGGTTTGTGTAAA
TCAGCCTTTAATAAACGAAAGGATTTTAATCCATTCAATGTATGAATGAT
ACCCCAGCTTAAGTTATTTCCCAGTCTCTTTTAGTACCCCTTTTATAACT
TTTCATTTTTTGATTTTCAGTTTTTCCAAATTCTATAATATTATAAATAT
TTTAATCATACAAATCTCTGCATCCTTGAAACTTACATGTTTTTATAAGC
ATGTGAAGACTCAGTTTTCGGTACTCAAACAATTACTCTATAAAAACATG
TATGTGGAGAGTCTACTTTTGCATATGAGAGAACATACCGGTTCCAAAGA
AATGTTTATAGCATTTACAATTTTTGCCAGAGCACAATCCAATTGATGAA
GAGTGTGAACTACATCCTTTGGTGATCGCTTGTCGGTTCTTCGCGCAATG
AGTACAGTTGCATCGAACGCATTTGCATAATCCGGAGTTTCTTCGTTCTT
TCATTTTTTTGACGTGTTTGTTTGGTGTCTTGCGGTGATTGTCTGCGACT
CGGCGCTTCAGGATGTGTCGCTGTGTTGTTTTGTATTTTGTCGTGTCTTG
TGTGATTTGTGTGTTACGATGGTCTTCACTTTATAATTTGTGTAGTTTTA
CTGCAATTGAGTTGCTTAGAACGATACAGTAACTAGTTGTAACCTTTTGA
TATTTTGCGTTGTTTTCCCCGCTTGATTCTAACTTCTATAACGCTTGTCT
GTCGCTATGTATAACAATTCGTTAGTAGAAGTGTTGCTT

Coding sequence (CDS) from alignment at sc0000030:199593..203081-

>TCONS_00003602 ID=TCONS_00003602|Name=TCONS_00003602|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0000030:199593..203081- (Clytia hemisphaerica)
TTGCAGCGCGCGGTCGTGGAACGGAACGTGGAGGCTCAAGAGGCGGATCC
AGAGGATTCTTCCCAAGAAGACGTTAAATGTCAGGTGGCTCAATTGGTGT
TCCTATTAAAGTTCTTCACGAAGCTGAAGGCCATGTTGTGACGTTAGAGA
CACTTACAGGTGAAGTTTACCGTGGAAAATTATTAGAGGCTGAAGACAAT
ATGAACTGTCAAATGATCAACATTACCATGACTGCACGAGATGGTCGTGT
CTCACAGTTGGAACAGATTTTCATCCGAGGAAGTAAAATTCGTTTTGTTA
TCTTACCTGATATGCTGAAGAACGCTCCTATGTTCAAAAAAATGATGATC
CAAAAAAGTAGTGGTGTTGGCCGTGGAAAGTCTGCACTACTGAAAGCTCA
AGTTGCAGCGCGCGGTCGTGGAACGGAACGTGGAGGCTCAAGAGGCGGAT
CCAGAGGATTCTTCCCAAGAAGACGTTAAATGTCAGGTGGCTCAATTGGT
GTTCCTATTAAAGTTCTTCACGAAGCTGAAGGCCATGTTGTGACGTTAGA
GACACTTACAGGTGAAGTTTACCGTGGAAAATTATTAGAGGCTGAAGACA
ATATGAACTGTCAAATGATCAACATTACCATGACTGCACGAGATGGTCGT
GTCTCACAGTTGGAACAGATTTTCATCCGAGGAAGTAAAATTCGTTTTGT
TATCTTACCTGATATGCTGAAGAACGCTCCTATGTTCAAAAAAATGATGA
TCCAAAAAAGTAGTGGTGTTGGCCGTGGAAAGTCTGCACTACTGAAAGCT
CAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002010XLOC_002010Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003602-proteinTCONS_00003602-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003602-exon-sc0000030-1575043694:202619..203081TCONS_00003602-exon-sc0000030-1575043694:202619..203081Clytia hemisphaericaexon
TCONS_00003602-exon-sc0000030-1575043694:199593..201832TCONS_00003602-exon-sc0000030-1575043694:199593..201832Clytia hemisphaericaexon
TCONS_00003602-exon-sc0000030-1510915933:202619..203081TCONS_00003602-exon-sc0000030-1510915933:202619..203081Clytia hemisphaericaexon
TCONS_00003602-exon-sc0000030-1510915933:199593..201832TCONS_00003602-exon-sc0000030-1510915933:199593..201832Clytia hemisphaericaexon
TCONS_00003602-exon-sc0000030-1491911889:202619..203081TCONS_00003602-exon-sc0000030-1491911889:202619..203081Clytia hemisphaericaexon
TCONS_00003602-exon-sc0000030-1491911889:199593..201832TCONS_00003602-exon-sc0000030-1491911889:199593..201832Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:199593..203081 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
92.6916	85.0294	219.967	248.687	218.232	158.164	97.7902	103.514	81.6817	70.1877	63.3138	67.4603	53.7429	55.9048	48.1893	58.9074	72.2316	61.1413	33.8727	46.9493	49.8956	46.1284	73.4456	61.6717	33.3868	35.849	42.8476	34.1606	42.7997	42.0016
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR034099SmD3
IPR010920LSM_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005681 spliceosomal complex
Blast
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BLAST of TCONS_00003602 vs. Swiss-Prot (Human)
Match: SMD3 (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 5.544e-52
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 1 
Query:  151 SIGVPIKVLHEAEGHVVTLETLTGEVYRGKLLEAEDNMNCQMINITMTARDGRVSQLEQIFIRGSKIRFVILPDMLKNAPMFKKMMIQ-KSSGVGRGKSALLKAQVAA 471
            SIGVPIKVLHEAEGH+VT ET TGEVYRGKL+EAEDNMNCQM NIT+T RDGRV+QLEQ++IRGSKIRF+ILPDMLKNAPM K M  + + SG GRGK+A+LKAQVAA
Sbjct:    2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAA 109
The following BLAST results are available for this feature:
BLAST of TCONS_00003602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMD35.544e-5279.63Small nuclear ribonucleoprotein Sm D3 OS=Homo sapi... [more]
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