TCONS_00003602-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003602-protein
Unique NameTCONS_00003602-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length133

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003602-protein ID=TCONS_00003602-protein|Name=TCONS_00003602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MSGGSIGVPIKVLHEAEGHVVTLETLTGEVYRGKLLEAEDNMNCQMINIT
MTARDGRVSQLEQIFIRGSKIRFVILPDMLKNAPMFKKMMIQKSSGVGRG
KSALLKAQVAARGRGTERGGSRGGSRGFFPRRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002010XLOC_002010Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003602TCONS_00003602Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR034099SmD3
IPR010920LSM_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005681 spliceosomal complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 11..76
e-value: 1.5E-12
score: 57.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 12..75
e-value: 4.7E-13
score: 48.5
NoneNo IPR availableGENE3D2.30.30.100coord: 7..86
e-value: 2.6E-19
score: 68.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..133
IPR034099Small nuclear ribonucleoprotein Sm D3CDDcd01721Sm_D3coord: 9..78
e-value: 3.4694E-45
score: 142.66
IPR010920LSM domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 9..130

Blast
[Close]
BLAST of TCONS_00003602-protein vs. Swiss-Prot (Human)
Match: SMD3 (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.117e-59
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 0 
Query:    5 SIGVPIKVLHEAEGHVVTLETLTGEVYRGKLLEAEDNMNCQMINITMTARDGRVSQLEQIFIRGSKIRFVILPDMLKNAPMFKKMMIQKS-SGVGRGKSALLKAQVAA 111
            SIGVPIKVLHEAEGH+VT ET TGEVYRGKL+EAEDNMNCQM NIT+T RDGRV+QLEQ++IRGSKIRF+ILPDMLKNAPM K M  +   SG GRGK+A+LKAQVAA
Sbjct:    2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAA 109
The following BLAST results are available for this feature:
BLAST of TCONS_00003602-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMD35.117e-5979.63Small nuclear ribonucleoprotein Sm D3 OS=Homo sapi... [more]
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