|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003598 ID=TCONS_00003598|Name=TCONS_00003598|organism=Clytia hemisphaerica|type=transcript|length=2309bpRun BLAST on NCBI protein sequence of TCONS_00003598-protein >TCONS_00003598-protein ID=TCONS_00003598-protein|Name=TCONS_00003598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp METLMNFTFQKALFVPKNLNQMRRCLCSIPGGSKRSVLTSKNDRPVGYTTRun BLAST on NCBI transcript from alignment at sc0000030:148015..182088- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003598 ID=TCONS_00003598|Name=TCONS_00003598|organism=Clytia hemisphaerica|type=transcript|length=34074bp|location=Sequence derived from alignment at sc0000030:148015..182088- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:148015..182088- >TCONS_00003598 ID=TCONS_00003598|Name=TCONS_00003598|organism=Clytia hemisphaerica|type=CDS|length=2955bp|location=Sequence derived from alignment at sc0000030:148015..182088- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00003598 vs. Swiss-Prot (Human)
Match: CK054 (Ester hydrolase C11orf54 OS=Homo sapiens GN=C11orf54 PE=1 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 1.430e-64 Identity = 94/178 (52.81%), Postives = 118/178 (66.29%), Query Frame = 2
Query: 419 NSCNLRQIQAK--DF--CLLGNFLASEGKQGKVIKINVKTRLSEENFPLAIRKVLTEYSPDKIIGLGGVFVIKNGKAKLHIMP-DFSCTPLETDEAVNNWLTFNVSSSPLVCLSVFYNVDQGYDLRIEHTHCFSHHGEGGHYHYDTTPXXXXXXXXXXXXXQLLRVDRPLNTHAVGRD 937
C L + K DF LL N ASEG+ GKVI++ K R NF +R+ L ++ +K IG+GG F+I+ GK K HIMP +FS PL +DE VN WL F +PLVCL VF + D G+DLR+EHTH FS HGEGGHYHYDTTP+ VEY YF+ AE L R+D+P TH++GRD
Sbjct: 138 GGCLLEKYSEKCHDFQCALLANLFASEGQPGKVIEVKAKRRTGPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKGKVKSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLEHTHFFSRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD 315 HSP 2 Score: 98.2117 bits (243), Expect = 1.430e-64 Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = 1
Query: 37 LFVPSNEDICKVLSQGLPKYFKEVSVNEVDCPNLTEKPWGLAAKGICGSPKNLDVGGPPYLVPTVQRDKIYKFEELAKLTGIKDTFFIGAGAGPCHVVGVNSEMMANLKTGDSEN 381
VPS E++ V+ +GL F +V V+ VDCP+LT++P+ KGICG + +VGG PYL+P V + K+Y ++AK + F +GAGAGP +G NSE M ++T +SE+
Sbjct: 8 FHVPSLEELAGVMQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKTRIAEVGGVPYLLPLVNQKKVYDLNKIAKEIKLPGAFILGAGAGPFQTLGFNSEFMPVIQT-ESEH 121 The following BLAST results are available for this feature:
BLAST of TCONS_00003598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.