TCONS_00003593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003593
Unique NameTCONS_00003593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003593 ID=TCONS_00003593|Name=TCONS_00003593|organism=Clytia hemisphaerica|type=transcript|length=1265bp
CACAATGCACGCTGTCtaattttttctgcacttttctcttttcttctgTC
AACAAATCGTCAAGTTTTCGTTTTCTTCGACAACAAAAATGTAAGTAAAA
TACATATGATCAAGATGTCTACATCACCAGAAGATTTCATCAAAGGAACA
GCTAAAGCATATGACCGTGTTTCAAAAATAGCCTTGAAGACACCACTTTT
GAAATCATTATGGCTTTCAAATTTAACAGGTTGCAATGTCTACATGAAAA
TGGAGTCTGAGCAAATTACAAGATCTTTCAAAATTCGAGGTGCAGTCAAC
AAAATGTCAAGTGTCATTGAAAGTGGGGCTGATAATGTAGTCACTGCTTC
AAGTGGTAATCACGGCTTAGCGTGTGCTTATGCTGGCTCCAAGTTAGGTG
TTTGTGTCACAATTTATTGCCCCTTGACAGCTTCACCTGCAAAATTGACA
GCTATCCGATCTTATTCTAATGCTACTGTCACCAAACATGGAGATGAATG
TGCTGAAACTGAATCTTACGCAAGATCTCAagcaaacaataaaaacatcc
ccTACATGTCACCTTACAATGATGTTGATACCATCTTTGGTCAAGCTACG
ATAGCTTACGAAATCCTTGAAGATCTACCTGATGTAAATGCGGTTTTTAT
TCCTGTTGGTGGGGGTGGTTTAGCTTCAGGGATCAGTGGATACCTTAAAG
CAACAAATAAAGATATTGTCACTATTGGGTGCCAACCTGAGGGGAACGCA
GCAATGTATCATTGCATTCAAGCAGACCGTATTCTTGAAGATAATTCTTT
CCTCAAAGATACTCTTGCAGATGGTGTTGCTGGCGGAGTGGAACCTGGCG
CTGTTACTTTTGACTTATGTAAACAAAACATAGATAAATGGTCACTAGTG
GGTgaagatgaaattgaaaaagctGTTTTTGATATGATAGATAAGGAGAA
GAAATTAGTAGAAGGTGCAGCATGTCTCGCAATTGCAGCATTACTTCGAA
TGAAAGCAGAGTTTCAAGGGAAGAACGTTGTTTTGATTATGTGTGGGGGG
AACATTAATACTTCTGTTGTAGCTTCAGTTTGTAGTAAATTTTTGTCTTA
GTTTATCTTTTACATCATTTTTGGACCAACcatggaggtcctttaaatta
acctatgttcgtctgttcgttcatttgtctgttaccagcttttcttgaga
ttggctcattcaggCTCATTAgcttttttctgatattttgaatgGTGATG
CAAATTGACAGTATC
Run BLAST on NCBI

protein sequence of TCONS_00003593-protein

>TCONS_00003593-protein ID=TCONS_00003593-protein|Name=TCONS_00003593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
HNARCLIFSALFSFLLSTNRQVFVFFDNKNVSKIHMIKMSTSPEDFIKGT
AKAYDRVSKIALKTPLLKSLWLSNLTGCNVYMKMESEQITRSFKIRGAVN
KMSSVIESGADNVVTASSGNHGLACAYAGSKLGVCVTIYCPLTASPAKLT
AIRSYSNATVTKHGDECAETESYARSQANNKNIPYMSPYNDVDTIFGQAT
IAYEILEDLPDVNAVFIPVGGGGLASGISGYLKATNKDIVTIGCQPEGNA
AMYHCIQADRILEDNSFLKDTLADGVAGGVEPGAVTFDLCKQNIDKWSLV
GEDEIEKAVFDMIDKEKKLVEGAACLAIAALLRMKAEFQGKNVVLIMCGG
NINTSVVASVCSKFLS
Run BLAST on NCBI

transcript from alignment at sc0000030:18906..28417-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003593 ID=TCONS_00003593|Name=TCONS_00003593|organism=Clytia hemisphaerica|type=transcript|length=9512bp|location=Sequence derived from alignment at sc0000030:18906..28417- (Clytia hemisphaerica)
CACAATGCACGCTGTCTAATTTTTTCTGCACTTTTCTCTTTTCTTCTGTC
AACAAATCGTCAAGTTTTCGTTTTCTTCGACAACAAAAATGTAAGGTAAA
TCTATTGACATCTAATTGGACTAATCCATTTTTAAACCTAAACCTCAGGT
AGCCATTCCAGGGTCAAATTGAAACTATTCAGGTGGCAATCAAACCTAGT
TCATCTTGTAGAGCTTCAAAAAAGAAAAAAAATGAGGGGTCATACACCTC
CTAATGATAAGCGGTTCCGGAGATATTGAGATTTNACAACACTCCCTTTT
GTAGAATCATAAAGAAGTAATGTCAGAAATATTCAATACAACCCCCAAAA
TGTACTGTATATACATAACTAAAATTGCTTGAAATAATCTGCAACATATC
TGTAGAACTGACAAAACAATTATCTGGAGCCAAAGTGATCAAAGAATCCA
GTGTGGTAAAAAAATATACNGTAGCACCTTTTTAGACATTTGAGGTTGAC
AATTTAGCCCAGAAATGGCATATAAAAAGGCACCGAAATATGCTGCGAAA
ATTGAAAATTCAAGCTTTTGTATTGAGTCAAGATATTCCAGATATCTTCA
TTTTGACTGCAGACTTTGATCAAGTTCTTTTTGTAATGGCTTGCTAACAC
TTCCAGGAAGAAATGAAAAGACATTTTTTTGAAAAAAAAAAAAAAAAATT
TTTTTGAAAAAAAAAAAAAAAAATTTTTTTGAAAAAAAAAAAAAAAAATT
TTTTTGAAAAAGAAGACATTGCATTGCAAAAAAACAATAAAAACGTTATA
AAGCGGAAGTTAAAATTGCTGAACCTACCTATCTTTGTAATCAAAGCGCT
GCGGAGGAAAAATTCCCCATGGCATATAAATAACTGTTTAGGCTAAAAAA
GGGTCAAATTTTTCAGTGGTATCACTCTCTTTAATTCTAGTCCTCATTTT
CCAGGCTGAAAATGCTTGTCAAAGTATGAAAAGTAAAAAATGATAACTTT
AATGAAAGAATTAATTTCAGAGAGTAGCACCATTGGATTTCTCAGGTATT
TTCTGATAAATATGGAAAGTTTCACTGTCTGAACATTTTTTCCTCCGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAATTTTTAGACAAAAGTGTAGAATATTACACCTACATA
TTACATATGGTTGGAAAGCTAAAAGAAAGTTCTAAATTACTCAAAAAGAA
TTAATTTTATAGCTCAACTACACAAAGAACAATTATTGCTTGTCAAAGTT
TGACCTAAAATTGAAGATTTTGATAAGCGTCAAATAAAAAACAAGCAAAC
CCAGAATGGCTACCTCAGGCAGATACTGCACTGTACTGCACTGATCATAT
CTTTGTTTGTGACTTTCATTTGTCGCAAAAATTTTAAGGTTTGATTTGAC
CAGACGATGTCAATCGAACGAATCGAACGCCGAATCAATTGAACGCAATT
GAACACAATCGAATAATTGCAATTCGATTGTCGGACGCAATCGAATTGCA
ATCGAATATTACCCAGGATTTGCCATTCGATTGCTTCAATTACGTTCGAC
TGTATTCGATTGCGTTCGGTTGTATTCGATTATGTTCGATTACGTTCGAC
TGATTCAATAGTACTAGATTTTACTCACTTTTCGTACGGTACTTAAGCGC
TCGGCCGCCCACGCTAAAAAAAAGCTCTAACGGGGTAATCCAATTTAATT
TAATCGCAATCAAACTCATCGAACATAATCGTAATCGAACGAAATCGAAT
GTAATTGACAATCAATCGAACCAATTGAACATTCAACTATCAATCGAACC
AATCTAACCTTACTCGAACGCAATCGAACACAATCGAATATTACTCAGGA
TTCGGTAATCGAACGAAATCGAATGTAATTGACAATCAATCGAACCAATT
GAACATTCAACTATCAATCGAACCAATCTAACCTTACTCGAACGCAATCG
AACACAATCGAATATTACTCAGGATTCGGTAATCGAACGAAATCGAATGT
AATTGACAATCAATCGAACCAATTGAACATTCAACTATCAATCGAACCAA
TCTAACCTTACTCGAACGCAATCGAACACAATCGAATATTACTCAGGATT
CGGTCGTTCGATTAAGATTCGATTGCGTTCGACAATCGAATCACAATTAT
TCGATCGCGTTCGATTACGTTCGATTGGTTCGATTGCGATTTTTGTTTGA
AGTTGTTCGATTGACACCGTCTGGATTTGACAGAGTCAAATTAATTTTAG
TCTTATTCCTTAACCTAGTCTTGCAAATCTGAAAAAAACAAACTATCCAG
TTCCTGTCACATTATTTTGTTAATTTTTTAAGGACTAGACTAGCTAATAG
ACCTTTTCACCTTTCCATCCGCCATCTTGTGAATTGTATGCAAAAATACA
GGAACGAAAACTAGGAACGAAAAAGCCATGGTTGGATTTAGTTGGAAAGT
ATGCAAAACATATGCAAGTTTACACAAAGATTAAAAGGACAACAAAGCAT
GTTATAAAGAAATATTATAATCATTTGAACAATAAAAGATGGAACTTTAT
AATCCAAAAAGAAGTATTTACCAAACAACAAGAGAAATTTTTTCTTAAAG
ACATTATATATTCTGCTTTCATGCCATTAAAAAATTCCACCAAGATGGAG
TACACACATCAAACTTTCAAAACACTTAAACTGAAAGCAGTAATTATGAC
GTCACACATTCGGTGGGTTCGGCTCAATGTTTTGATTTGATCGTTTGGCG
GTTCTATTCCCAGGAGAATAATTTACTGTCAGCCGAATAAGGATCATTTT
TGTACCTTTGTGGGTGATTTTTCAGCTTGAGTTTATGTCTAATGTTATGG
TTTTTTGAAGTGCTTGTAATAAGTAGAGATCTTAAGGAAGATAGAAATTA
GAGTTTTTCAGCGTTCCGAAAAAAATGCATTGCACAAATTTTTTCATCTT
CACAGCGGATCGATTCTCAACAACAAATACACCTTTTCATCTTTGGGTTT
GTTTCTGACGTTTTTCCTTCAAAGAATATCGATCACTTTCCTTTTCCCCT
TGAGCGCGCGAGAAAAAAATGATTAGCTTGCGTATTCGCATCGGCGAATA
AAGATGAGGCGGCAATCTTGCCATGAGGGTGCTACTTAGCTTCCGCCCTA
TTTTGCGCCCACGATAGAATGGTCCAAACACGGGGGTATTCCAAATGATA
AACTATGTTGTTCTGTAAGTGTTTATTTTCTGAGATATACAAATACCGTA
AGTTGTTCTAATATTGACATCCCTCGTCTAATTCCGACACCCTTCTTTAG
AGAAAGGCAGTTAGCGAAACCATCCAGGATCCTGCCATTCTATAAGCCAG
CAAAAACTAAATGACACTTGTAAACTTAAGTTTCTTACCATTTTCCATCA
AAAATAACCAAAAACATTGCTACTTCCCAAAGCCGGAGACCAAAACAAAT
TATCTTCAAAGATTATGGCGCCCTTTTGTATCTATTGTTAAGGCCATCTA
AAATGGTGGAAAGAGTTGCGGAAAGACAAAGACGTCCGCTGCTTTGAGGG
TGGTAACGCCAAAACACCCGATATAATCTTCCAACAGAAGGCGAGTTAGT
TGCCGCGCGAGTTACGTCATGCACTCCACCGCAGTGCACAACGAAGCATG
TTTCAATGAATATCATTAATTATAAGAATATCTTATGTGCTTACTTTCAG
TAAACTTTGAGTGCTTCATTGAAAATAAAGAAGGTAAGAAGATAAAAAAA
GCACTGGATAATTTTCATTGTAACAGTTTGGTCAATCATCGCTGAAAGTT
TGAAAAAGTTTTTCCGACGCAAAAAAAAGTTTCAGCTAATTAAAAGCACA
GTGTGCTTATACTTACTATGTTTGCTACATCGTCTAGGCTAAAAAAAGTG
CGAAAAGACACGAACGCCATTTTTTAATGAGTGATGTTATTATTTTTTTG
ATTGCGGCCGCATACAAAAACTCGCCAAATGTTCCTAACTGAAAGGCATA
ATATGTAAGCTTGAATCACTGATTGAAAAAGGATTATTCCTCTCTGACCA
CTAAGCAAAAAAGAAAACAGTTTCAACCTTTCTATGAATTTCAGCTGATA
AAAGGGTGTCGGAATTAGAGATTAGATTAGATTTCCTACCTGTCAACCTA
TATACCTCTGTAAATAGTATTAGAAATCAAAGAGAAAAAATTTACAATAA
GCGTTAGGATTCTGAACTTAGCTGTTAGGCGCAAGCCTGTCACAGAAAGG
TAAAATTGCTTTTACTATCCAGGGGGTTTCTACATATTTTCAAGAATTTT
TCTGGCTTGAAAAGGCTCTTCCACCCCTGTATGGATATTTAATGGAGCAG
TCTAGTTTGGGAAATTGCATAGATCCGCAACGTTGCCAAATTTCGCGTTT
TTTGCGTTGTCATATTCCGCGGCGCTGCGAAATTCCGCAGCTTTATCGCT
GCATAATTTCGCAGCCCTGGCCTATGGACCAAAACCTGCATCGCAAGGCC
TGGACCGGGGTCCCAAAATAATGTGCATTTTGCAGAACAGATCAAAATTG
AACTTTTCACCTTACCATTTTAATTTCCTACCTAGCGATTATTCACAATC
ATTCTTGGAAGAAACAGGAAGAAATGCTACTTTGTTCAAATATGCCAGAT
TAATTGCCTAATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT
ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAT
GTATGTATGTATNGGAAATTGCATAGATCCGCAACGTTGCCAAATTTCGC
GTTTTTTGCGTTGTCATATTCTGCAGCGCTGCGAAATTCTGCAGCTTTAT
CGCTGCATAATTTCACAGCCCTGGCCTATGGACCAAAACCTGCATCGCAA
GGCCTGGACCGGGGTCCCAAAATAATGTGCATTTTGCAGAGCAGATCAAA
ATTGAACTTTTCACCCTAGCATTTTAATTTCCTACCTAGCAATTATTCAC
AATCATTCTTGGAAGAAATGCTACATTGTTCAAATATGCCAGATTAATTG
CCTAATGTATGTATGTATGTATGTATGTATGTATGTAATAGTTTATTTCA
AGTTGGCGAACAGGTAGCAACAAAGGCTAATAAAAGTCAACGCAACTTTA
CAATTTGTAAGGTGATTACAAAAAGCCGACACTGTCAATATAGGTCCAGA
AGTTTCTACACGGGTATGATGTAGGCCTCCACTGCTTAATATTTTCCTTA
AAAATACTAAGATCGACTATATCTCTATACTCATCTGGAATTAATTCCCA
AACTTTTTGCCCTAAAAATGAAAGTGACTCTGAACCGTGAAAAACAGAGT
TTATTTCTCTTGATCTGAACTAAGGCGTTTTGCGATTTACTTTGATATTT
TCATCATGTTTGAAAATTTCTTTAGTTAGATCTGATATGTTATTTTTACA
TTTGAAAATGCTAACAACTGAAGATTTTTATGGTGGAATTTGATGGCACC
GTCTTTCTCTAAAAGCTGCTCAAAAGTAGATGTATGATCAGAATACACTA
TCCTCAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTCTAGCCTGCGAACATGAAACATCCAGACAA
GCGAACAATAATTGAATTGACTTCGAAAGAAGGCATTCATGAGCCTTTGC
TTTTTCTTTTGATTCATGTACCGTGCTACCCTCGCAAATGCACTGATTTT
CTGGCTAGCTTTCTTATAAATCGTGTTAATATGTGGCTCAAAAGTCAGAC
AGTTGTCAAAAGTTAATCCTAGGATCTTGCCTGAGTTGCTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCTTGCCTGAGTTGCTGTTAAAGATGCGTTCATTCTGTATAGTAAT
GAAGATTTCTTTGCTGGTATTGTTAGCTATCAACTCAGACTTGTCTGCAT
TTCCTTGCATCTGATTTTGGGTTATCCTTTCAAAGATGATAGCAGCTATT
TGAGAGCTCCTCGCCAACCTGTTCCCAAGAATCAGCTATCACAAAAGGTG
TTGTATCGTCTGCATAATTCAGTACATTTCTATTTTCAAGAAAGTAGAAC
AAATCTCTCATGTAGATGTTAAATAGTAGCGACCCTAGAATGGATCCTTG
GGGAACACCTACTTTAACATTATGCCAGGTACTATAATTGTCGCCAATTT
TCGTTCTTTGCTTTCTATCTGATAGATAGGCTGCTATGAGACCTAATGCA
CTCCTTGAAAATCTTTATGCTTCAAGTTTAGCAATCAATAGTTCGTGCGA
GATGCAGTCGAAAGCTTTTGATAAGTCAATGAGTAAAACAAACAATCTTT
TTCTTTTCATCTGTAGCTTCTTCCAAATTTCAGTCATGACTAAAAGTGGA
GTTTGTGTACTCATTCCTTTTCTATATCCAAATTGTCTATTGCTCAAAAT
GTTGTTAAAGTAGGTTAAGACTTGGGTATGTATGACTTTTTCATAAATTT
TTGACAGAACTGGGAGAATACTCACCGGTCTGAAGTTGCTCTTGTCATTC
TTTGAACCTTTTCTCTTATACACAGGTGTTATATCGGCAGGCTTCAATTC
TTTTGGAAAAGAGTTTGACTCGAATAACGCATTTATTTCTGAGCATAAAA
ACTTAATTTAATTGGTTTTTGTAGTTGGTGTTCATAATCGCACACTTCCA
TTGGGAACGTTTGCAAAAAATTGCAGCACGCGCTGAGGGGAGCGTTGCGA
GAAAAAGCAACATTGCGGAATTTTGCAATGTTGCGGATCTTATGCAATTT
CCCAAACTGAGTTGGCAAAGGATATCATCCCTCAGGATGCAAGTCAAATT
GTTCAACCTGGGGACCTAGACGAGGGTTATTATCAGACCTCCAGAGACAA
AACGGTAGAAAGCATCAAAATAATGTGCATGAATCTGTTTTACAAATTAC
GGGACTGGTGAAAATTTGTGTCTCTATTCCATATTCCATATTGTGGTGAT
GAAACAGAGGTTGTTTTTTCTTTTTAAAAACTTAATAAGGTTTCTAATGT
TTCTGTAAGTGTTTCTTTTTTGGATCATGAAGTTATCTTTAAATGTTCTA
AATAAGTATAATATTTCTTCATTAGATGCTTTATTGGCTTTTCAATCTTT
GTGTAAACTTTCAAAAAAAATATTTTTGCCTATTTTCCAAGAATCAAAAC
TTCAAATCTCAAATTTTGACCTGTACACTTTATTGCAACACCGTTTGTTA
CTTTAACTTCTTATAATGCAGACATACCTTTTTTCTAATTTCGTCATAGC
AACTATCTGGTCTTTAAAATGTTTATACATATAATACACGATAAAAATTG
TTATACATAAAGAAAATCACTCTAACTACTCTAACTACTTTGCAGACCAG
ATATTTGCTATGGCAAGATTAGACAAGACGTATGTCGGCATTACACAAAG
TTACAGTAGTTTTAAGAAAAAGAGAAGTCACAAGAAAGAAATAAATGGAA
AATTAAAGAGTTGAACTACATTGTACAGAGATTATTGATGTAAACAAATC
AGGCTACATAAGGATATAACCAAAAGAATTTTCTTTGATTTTCTATGAAT
GTGCTGATTTTTCTGGATGCATTTAACACAAATATTGTATAACGTAATAT
AATTCTAATTGCTGTGTGTTTGAAAGAATGTCTTGTTGTAGTATACTTTT
ATTCCCTAGCTGATGAAAATTATAAAACCTTGTTTCAATAGTATTTACCT
TTACAGTTTTGAACAAAATGTCACTTTTTGGCCCATATAAGTCTTTTGCT
AGGCCTCAGCAGCGTACCCCCTCAACAAAATGCTTACAACATACATTAAT
AAACCTTTATATTCATGTGGTTAGGTCCTAAAAAAATTTCACAGATCCTA
AGGATTGGCCCCCTTTAATAAAAAGGCTTTTTTGATTATTAGTAAAATAC
ATATGATCAAGATGTCTACATCACCAGAAGATTTCATCAAAGGAACAGCT
AAAGCATATGACCGTGTTTCAAAAATAGCCTTGAAGACACCACTTTTGAA
ATCATTATGGCTTTCAAATTTAACAGGTTGCAATGTCTACATGAAAATGG
AGTCTGAGCAAATTACAAGATCTTTCAAAATTCGAGGTGCAGTCAACAAA
ATGTCAAGTGTCATTGAAAGTGGGGCTGATAATGTAGTCACTGCTTCAAG
TGGTAATCACGGCTTAGCGTGTGCTTATGCTGGCTCCAAGTTAGGTGTTT
GTGTCACAATTTATTGCCCCTTGACAGCTTCACCTGCAAAATTGACAGCT
ATCCGATCTTATTCTAATGCTACTGTCACCAAACATGGAGATGAATGTGC
TGAAACTGAATCTTACGCAAGATCTCAAGCAAACAATAAAAACATCCCCT
ACATGTCACCTTACAATGATGTTGATACCATCTTTGGTCAAGCTACGATA
GCTTACGAAATCCTTGAAGATCTACCTGATGTAAATGCGGTTTTTATTCC
TGTTGGTGGGGGTGGTTTAGCTTCAGGGATCAGTGGATACCTTAAAGCAA
CAAATAAAGATATTGTCACTATTGGGTGCCAACCTGAGGGGAACGCAGCA
ATGTATCATTGCATTCAAGCAGACCGTATTCTTGAAGATAATTCTTTCCT
CAAAGATACTCTTGCAGATGGTGTTGCTGGCGGAGTGGAACCTGGCGCTG
TTACTTTTGACTTATGTAAACAAAACATAGATAAATGGTCACTAGTGGGT
GAAGATGAAATTGAAAAAGCTGTTTTTGATATGATAGATAAGGAGAAGAA
ATTAGTAGAAGGTGCAGCATGTCTCGCAATTGCAGCATTACTTCGAATGA
AAGCAGAGTTTCAAGGGAAGAACGTTGTTTTGATTATGTGTGGGGGGAAC
ATTAATACTTCTGTTGTAGCTTCAGTTTGTAGTAAATTTTTGTCTTAGTT
TATCTTTTACATCATTTTTGGACCAACCATGGAGGTCCTTTAAATTAACC
TATGTTCGTCTGTTCGTTCATTTGTCTGTTACCAGCTTTTCTTGAGATTG
GCTCATTCAGGCTCATTAGCTTTTTTCTGATATTTTGAATGGTGATGCAA
ATTGACAGTATC

Coding sequence (CDS) from alignment at sc0000030:18906..28417-

>TCONS_00003593 ID=TCONS_00003593|Name=TCONS_00003593|organism=Clytia hemisphaerica|type=CDS|length=2202bp|location=Sequence derived from alignment at sc0000030:18906..28417- (Clytia hemisphaerica)
TAAAATACATATGATCAAGATGTCTACATCACCAGAAGATTTCATCAAAG
GAACAGCTAAAGCATATGACCGTGTTTCAAAAATAGCCTTGAAGACACCA
CTTTTGAAATCATTATGGCTTTCAAATTTAACAGGTTGCAATGTCTACAT
GAAAATGGAGTCTGAGCAAATTACAAGATCTTTCAAAATTCGAGGTGCAG
TCAACAAAATGTCAAGTGTCATTGAAAGTGGGGCTGATAATGTAGTCACT
GCTTCAAGTGGTAATCACGGCTTAGCGTGTGCTTATGCTGGCTCCAAGTT
AGGTGTTTGTGTCACAATTTATTGCCCCTTGACAGCTTCACCTGCAAAAT
TGACAGCTATCCGATCTTATTCTAATGCTACTGTCACCAAACATGGAGAT
GAATGTGCTGAAACTGAATCTTACGCAAGATCTCAAGCAAACAATAAAAA
CATCCCCTACATGTCACCTTACAATGATGTTGATACCATCTTTGGTCAAG
CTACGATAGCTTACGAAATCCTTGAAGATCTACCTGATGTAAATGCGGTT
TTTATTCCTGTTGGTGGGGGTGGTTTAGCTTCAGGGATCAGTGGATACCT
TAAAGCAACAAATAAAGATATTGTCACTATTGGGTGCCAACCTGAGGGGA
ACGCAGCAATGTATCATTGCATTCAAGCAGACCGTATTCTTGAAGATAAT
TCTTTCCTCAAAGATACTCTTGCAGATGGTGTTGCTGGCGGAGTGGAACC
TGGCGCTGTTACTTTTGACTTATGTAAACAAAACATAGATAAATGGTCAC
TAGTGGGTGAAGATGAAATTGAAAAAGCTGTTTTTGATATGATAGATAAG
GAGAAGAAATTAGTAGAAGGTGCAGCATGTCTCGCAATTGCAGCATTACT
TCGAATGAAAGCAGAGTTTCAAGGGAAGAACGTTGTTTTGATTATGTGTG
GGGGGAACATTAATACTTCTGTTGTAGCTTCAGTTTGTAGTAAATTTTTG
TCTTAGCACAATGCACGCTGTCTAATTTTTTCTGCACTTTTCTCTTTTCT
TCTGTCAACAAATCGTCAAGTTTTCGTTTTCTTCGACAACAAAAATGTAA
GTAAAATACATATGATCAAGATGTCTACATCACCAGAAGATTTCATCAAA
GGAACAGCTAAAGCATATGACCGTGTTTCAAAAATAGCCTTGAAGACACC
ACTTTTGAAATCATTATGGCTTTCAAATTTAACAGGTTGCAATGTCTACA
TGAAAATGGAGTCTGAGCAAATTACAAGATCTTTCAAAATTCGAGGTGCA
GTCAACAAAATGTCAAGTGTCATTGAAAGTGGGGCTGATAATGTAGTCAC
TGCTTCAAGTGGTAATCACGGCTTAGCGTGTGCTTATGCTGGCTCCAAGT
TAGGTGTTTGTGTCACAATTTATTGCCCCTTGACAGCTTCACCTGCAAAA
TTGACAGCTATCCGATCTTATTCTAATGCTACTGTCACCAAACATGGAGA
TGAATGTGCTGAAACTGAATCTTACGCAAGATCTCAAGCAAACAATAAAA
ACATCCCCTACATGTCACCTTACAATGATGTTGATACCATCTTTGGTCAA
GCTACGATAGCTTACGAAATCCTTGAAGATCTACCTGATGTAAATGCGGT
TTTTATTCCTGTTGGTGGGGGTGGTTTAGCTTCAGGGATCAGTGGATACC
TTAAAGCAACAAATAAAGATATTGTCACTATTGGGTGCCAACCTGAGGGG
AACGCAGCAATGTATCATTGCATTCAAGCAGACCGTATTCTTGAAGATAA
TTCTTTCCTCAAAGATACTCTTGCAGATGGTGTTGCTGGCGGAGTGGAAC
CTGGCGCTGTTACTTTTGACTTATGTAAACAAAACATAGATAAATGGTCA
CTAGTGGGTGAAGATGAAATTGAAAAAGCTGTTTTTGATATGATAGATAA
GGAGAAGAAATTAGTAGAAGGTGCAGCATGTCTCGCAATTGCAGCATTAC
TTCGAATGAAAGCAGAGTTTCAAGGGAAGAACGTTGTTTTGATTATGTGT
GGGGGGAACATTAATACTTCTGTTGTAGCTTCAGTTTGTAGTAAATTTTT
GTCTTAGCACAATGCACGCTGTCTAATTTTTTCTGCACTTTTCTCTTTTC
TTCTGTCAACAAATCGTCAAGTTTTCGTTTTCTTCGACAACAAAAATGTA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002004XLOC_002004Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003593-proteinTCONS_00003593-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003593-exon-sc0000030-1575043694:28323..28417TCONS_00003593-exon-sc0000030-1575043694:28323..28417Clytia hemisphaericaexon
TCONS_00003593-exon-sc0000030-1575043694:18906..20075TCONS_00003593-exon-sc0000030-1575043694:18906..20075Clytia hemisphaericaexon
TCONS_00003593-exon-sc0000030-1510915933:28323..28417TCONS_00003593-exon-sc0000030-1510915933:28323..28417Clytia hemisphaericaexon
TCONS_00003593-exon-sc0000030-1510915933:18906..20075TCONS_00003593-exon-sc0000030-1510915933:18906..20075Clytia hemisphaericaexon
TCONS_00003593-exon-sc0000030-1491911889:28323..28417TCONS_00003593-exon-sc0000030-1491911889:28323..28417Clytia hemisphaericaexon
TCONS_00003593-exon-sc0000030-1491911889:18906..20075TCONS_00003593-exon-sc0000030-1491911889:18906..20075Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:18906..28417 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0567761	14.0199	14.6163	14.808	0.13623	7.67821	0.114728	0.0607041	18.3544	20.3612	18.3386	14.8278	15.745	15.4831	0.0216148	0.0245544	0.035235	5.50951	0.0204682	3.09428	0.0187186	11.6581	21.0133	7.43366	7.69215	13.7808	0.0079738	0.00951635	12.6118	7.52251
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001926TrpB-like_PLP-dep
IPR000634Ser/Thr_deHydtase_PyrdxlP-BS
Vocabulary: Biological Process
TermDefinition
GO:0006520cellular amino acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0030170pyridoxal phosphate binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006520 cellular amino acid metabolic process
molecular_function GO:0030170 pyridoxal phosphate binding
Blast
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BLAST of TCONS_00003593 vs. Swiss-Prot (Human)
Match: SRR (Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.676e-31
Identity = 102/302 (33.77%), Postives = 156/302 (51.66%), Query Frame = 1 
Query:  190 TPLLKSLWLSNLTGCNVYMKMESEQITRSFKIRGAVNKMSSVI----ESGADNVVTASSGNHGLACAYAGSKLGVCVTIYCPLTASPAKLTAIRSYSNATV-TKHGDECAETESYARSQANNKNIPYMSPYNDVDTIFGQATIAYEILEDLPDVNAVFIPVXXXXXXXXXXXYLKATNKDIVTIGCQPEGNAAMYHCIQADRILEDNSFLKDTLADGVAGGVEPGAVTFDLCKQNIDKWSLVGEDEIEKAVFDMIDKEKKLVEGAACLAIAALLRMKAEFQG-----KNVVLIMCGGNINTS 1065
            TP+L S  L+ LTG N++ K E  Q T SFKIRGA+N + S++    E     VVT SSGNHG A  YA    G+   I  P TA   K  AI++Y  + V  +  DE    E+ A+          + P  +   I GQ TIA E+L  +P V+A+ +PVGGGG+ +GI+  +KA    +     +P      Y      +++  N +  +T+ADGV   +  G  T+ + +  +D    V EDEI+ A   + ++ K L+E  A + +AA+L     FQ      KN+ +++ GGN++ +
Sbjct:   26 TPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDE--SRENVAKRVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLM-PNLYPPETIADGVKSSI--GLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQ--HFQTVSPEVKNICIVLSGGNVDLT 320
The following BLAST results are available for this feature:
BLAST of TCONS_00003593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRR3.676e-3133.77Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1[more]
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