TCONS_00003593-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003593-protein
Unique NameTCONS_00003593-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003593-protein ID=TCONS_00003593-protein|Name=TCONS_00003593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
HNARCLIFSALFSFLLSTNRQVFVFFDNKNVSKIHMIKMSTSPEDFIKGT
AKAYDRVSKIALKTPLLKSLWLSNLTGCNVYMKMESEQITRSFKIRGAVN
KMSSVIESGADNVVTASSGNHGLACAYAGSKLGVCVTIYCPLTASPAKLT
AIRSYSNATVTKHGDECAETESYARSQANNKNIPYMSPYNDVDTIFGQAT
IAYEILEDLPDVNAVFIPVGGGGLASGISGYLKATNKDIVTIGCQPEGNA
AMYHCIQADRILEDNSFLKDTLADGVAGGVEPGAVTFDLCKQNIDKWSLV
GEDEIEKAVFDMIDKEKKLVEGAACLAIAALLRMKAEFQGKNVVLIMCGG
NINTSVVASVCSKFLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002004XLOC_002004Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003593TCONS_00003593Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001926TrpB-like_PLP-dep
IPR000634Ser/Thr_deHydtase_PyrdxlP-BS
Vocabulary: Biological Process
TermDefinition
GO:0006520cellular amino acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0030170pyridoxal phosphate binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006520 cellular amino acid metabolic process
molecular_function GO:0030170 pyridoxal phosphate binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.1100coord: 179..356
e-value: 1.1E-38
score: 132.5
NoneNo IPR availableGENE3D3.40.50.1100coord: 72..178
e-value: 6.9E-26
score: 90.4
NoneNo IPR availableCDDcd01562Thr-dehydcoord: 52..353
e-value: 1.53907E-107
score: 319.433
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzymePFAMPF00291PALPcoord: 61..349
e-value: 4.7E-72
score: 242.8
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzymeSUPERFAMILY53686Tryptophan synthase beta subunit-like PLP-dependent enzymescoord: 50..356
IPR000634Serine/threonine dehydratase, pyridoxal-phosphate-binding sitePROSITEPS00165DEHYDRATASE_SER_THRcoord: 85..98

Blast
[Close]
BLAST of TCONS_00003593-protein vs. Swiss-Prot (Human)
Match: SRR (Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.219e-39
Identity = 102/300 (34.00%), Postives = 155/300 (51.67%), Query Frame = 0 
Query:   64 TPLLKSLWLSNLTGCNVYMKMESEQITRSFKIRGAVNKMSSVI----ESGADNVVTASSGNHGLACAYAGSKLGVCVTIYCPLTASPAKLTAIRSYSNATV-TKHGDECAETESYARSQANNKNIPYMSPYNDVDTIFGQATIAYEILEDLPDVNAVFIPVGGGGLASGISGYLKATNKDIVTIGCQPEGNAAMYHCIQADRILEDNSFLKDTLADGVAGGVEPGAVTFDLCKQNIDKWSLVGEDEIEKAVFDMIDKEKKLVEGAACLAIAALLRMKAEFQG-----KNVVLIMCGGNIN 353
            TP+L S  L+ LTG N++ K E  Q T SFKIRGA+N + S++    E     VVT SSGNHG A  YA    G+   I  P TA   K  AI++Y  + V  +  DE    E+ A+          + P  +   I GQ TIA E+L  +P V+A+ +PVGGGG+ +GI+  +KA    +     +P      Y      +++  N +  +T+ADGV   +  G  T+ + +  +D    V EDEI+ A   + ++ K L+E  A + +AA+L     FQ      KN+ +++ GGN++
Sbjct:   26 TPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDE--SRENVAKRVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLM-PNLYPPETIADGVKSSI--GLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQ--HFQTVSPEVKNICIVLSGGNVD 318
The following BLAST results are available for this feature:
BLAST of TCONS_00003593-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRR9.219e-3934.00Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1[more]
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