TCONS_00003575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003575
Unique NameTCONS_00003575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003575 ID=TCONS_00003575|Name=TCONS_00003575|organism=Clytia hemisphaerica|type=transcript|length=1875bp
GGCCAAGAACAAAAGACAGGGCAATTAGTATCTATTAACTGTTTTCGCTG
AACAATCAACATTGTCGAATATTTTTCTCTAACTATGACTATAGGGAACG
TTACAATTACGGAAGAACGACATGGACACATTgaagatgattttgatttt
gacttcaTTAATGACGTCATACTCCAATGCCTTCCCAACAGTTATGAGGA
AGAACAAACCAAATTTTGCTGGAATTCCATCACTGGCTGTAGATATAATA
GACGAAAGCCTTTGCATAGATGACGCTAGTTGTAAGACTGAAGGTTATAA
GTGCAACAAAGCATTGCCCACTTGGCAATGTCAACAACCATGCAATAACA
GACGTGACTGTCGTTATGGAATGACTTGTGATGTGGAACAAGGTTTTTGT
GGTGCTCCGAAAACATTTGACGATATTTTGAATAAACAAGGTTGTCCGAA
AATTCATAAACAACCATGCGCCACTAATACTGATTGTGCATGCGCAGATG
CTGAGTATGTCTGTGAGAAGGAATTGTTCAGCACGAAGAAAGAGTGCGTC
TCCAAGAAACCAATAcatgaacaaaagaaaaaacaagaggGAGAGACATG
TCGTAAAAACTCAGACTGTGAAGAATTATTTTACGCATGCGTTGATGGTA
CCTGTCAAGTAGATTTCTCATCTTTTGGCGAAGATAGCAGCTTTATGGAA
AACTTGTTTGGAAAGAATGCAgtcaagaaagaaaaacagaaaagttgagA
TTCTTCAATCGTTGGAAAACACATTCGAATGTTAAACGAATTTCTCAGAT
GACTCATTAAGCATGGTACGATTGACATTTATGGATGATCAAGGAGGGAC
AACAAAAGAAGGACATCAAACCTTCTTAAACAAAACATtgacgaaaaaaa
gaaataaaaatcattCATTACTGGAATCAAATTCCAGATTTGACGACACA
TGTCTTGACAAATTCGCAAACAGATTCTAAATGAACTGAAACTCGATAAT
GAAATTATGACATCAAATTACCgcaaattcaaggaaaagccaCCCACTGA
CGTGATGAGTGGTGCTAATTTGgcgaatcaaatcaaaatttaatgacaTT
TATTGAATGCGCAAAACAAAGAACAAAACAAATCGATTTCAATTTCATCC
ATTGTTGTCATGACAACACTGCAATCAAAATTATGATTGGTAAAGCACTT
TTGAATTACGTCACTCATCGAAGTTGCCCATTTTTGGTGGTGTTAATTAG
CTACAGAGTATCATATGTCGAGAGTTTGGAGTTTGATTTTAGCGAGCTAC
AGACCAAAAAATAGAACATTAGTATTTTTATATCATGATAATAAATGCAA
Gtcgtttaaaggttttatttttacacaagtgttcccgtttcatatcagcc
acatatttcatatcaggacagtgtctgcttaTTGTTCCATTATGCTGAta
gaagcaaaaaatgtttttcttttcttctttttggccaatcttgctccata
ttcgtgtcaatccaatatgaaaaagcttgtgcattaaaattgacgagtaa
gcaaaagatatcactcttatttaaaaacaaaacctttaacttgtTCATAT
TTAATTAATTTACAAGACAATTATTGAAACACTGAATATATTTTGATGAA
TTCAACGATTTACAGATGTGATTTAGTGCGAATTACACGACTTATTTTTC
TTTCCATATTTTATAGTGTATatttattgaaaacaaaattgatgaaaaag
ggaaatttaTAATAAAAGATATAAATATTGTGAGACTGtaaatattatat
tttaaaaactaaaagatttatttattttcaaattataaagttTTAGTAAA
AAGATATATATTGTGTACAAAAAAA
Run BLAST on NCBI

transcript from alignment at sc0000030:824770..828605+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003575 ID=TCONS_00003575|Name=TCONS_00003575|organism=Clytia hemisphaerica|type=transcript|length=3836bp|location=Sequence derived from alignment at sc0000030:824770..828605+ (Clytia hemisphaerica)
GGCCAAGAACAAAAGACAGGGCAATTAGTATCTATTAACTGTTTTCGCTG
AACAATCAACATTGTCGAATATTTTTCTCTAACTATGACTATAGGGGtat
ataagaaaaatatccaTAGCTTTTTTTTTACTATTGATACAGTTATCTTC
AAGGAAGATCTCTTATCCTTTGTTTAACACAGCATTTAAGTCTTGGCACT
TATTATTGCAAGACTTTGATAAGCTTTTTTTTTACTATTGATACAGTTAT
CTTCAAGGAAGATCTCTTATCCTTTGTTTAACACAGCATTTAAGTCTTGG
CACTTATTATTGCAAGACTTTGATAAGCTTTTTTTTACTACGCGCTTATA
AAGAGAGTATAACTATATAATATTTGTAAAGTAAGTGTATTTATTTTTAT
GCATTCGAATTTTCAAGGACTTTAAAATTTGAGGATCTGGACTGATTTCG
ACTGATTGATAAAATTTgaccaatatttttttctcgttaTTTTTGTAGAA
CGTTACAATTACGGAAGAACGACATGGACACATTgaagatgattttgatt
ttgacttcaTTAATGACGTCATACTCCAATGCCTTCCCAACAGTTATGGT
GAGTTCTGATTGGTCGAATACAGTATTATTGAATCTCTTACTCTTCAAAT
GCGAATCTGCTGGTTTCAAACTTGAAAGTGTGGCTGTTTGTTTCCCAGCT
Ggtaacaacgttgtttcaacgttcatctaaccttatatggacgttgtgaa
cattagactAACGTTGGAACAACGTTGTTTGCCAGGTTGGTTATAGGGGT
TGTAGGGTATCGAAGTAGTTTTGGCTGGGGTATTTTGTATGCTTTAGTCT
TTTGAGTTTAATGGTCGATTCATTATAGcgtaacatttttttaaatttat
tcttataGAGGAAGAACAAACCAAATTTTGCTGGAATTCCATCACTGGCT
GTAGATATAATAGTAAGTTGAAAAACAACGAAATTGACATCTGATTAAAA
ATGTGATTATGTATTCATTAAATCTAATGAGTATAACGGCATTCCATTTC
AACGACTAGCTTCCTTTTGTTTATAAACAGTTATGATTGGAATCTTAAAA
AAACATATTCTGTGTCTcgtcattctattggttaaaatcTAGGTGGAAAA
TATTGATTATAAAAAAGATTACAAGAACAGCCTTAACAATTTTCAAAGTT
CTTTGCCCCCCCCTATTGGTTGAATTGTAGGGTCAAAGAAACATTATATG
TACGGAACAGAGATTCTTTCGGCTAGGCCTTTCGGAATGTTTCGCGCTTA
AGAAAAGATTATACAATTAGCATCTCCaaatattcaaaaatcaaattttt
tcctaaattgctacattttcttatttctttagGACGAAAGCCTTTGCATA
GATGACGCTAGTTGTAAGACTGAAGGTTATAAGTGCAACAAAGCATTGCC
CACTTGGCAATGTCAACAACCATGCAATAACAGACGTGACTGTCGTTATG
GAATGACTTGTGATGTGGAACAAGGTTTTTGTGGTGCTCCGAAAACATTT
GACGATATTTTGAATAAACAAGGTTGTCCGAAAATTCATAAACAACCATG
CGCCACTAATACTGATTGTGCATGCGCAGATGCTGAGTATGTCTGTGAGA
AGGAATTGTTCAGCACGAAGAAAGAGTGCGTCTCCAAGAAACCAATAcat
gaacaaaagaaaaaacaagaggGAGAGACATGTCGTAAAAACTCAGACTG
TGAAGAATTATTTTACGCATGCGTTGATGGTACCTGTCAAGTAGATTTCT
CATCTTTTGGCGAAGATAGCAGCTTTATGGAAAACTTGTTTGGAAAGAAT
GCAgtcaagaaagaaaaacagaaaagttgagATTCTTCAATCGTTGGAAA
ACACATTCGAATGTTAAACGTAAGTCATTTATATTCTACACATACATTCA
AAAGTGAAAATTGCATTGCTAAAAATGTCTAGATCCGACTTATAATAAGT
TATATTAGGCTCTATAAGCAAGCAAGCGAGGGATTAAGGAGTATTAAATT
GATATCTGCTGGATTCTCGCCACGAGCCTCATTGAAAAGAGATTAATTGG
AAGCTAAATTTAGGTCAAATTTTAAGGTTAAGCCTAATCCGTGGATCTCT
GAAACGAACGGAGGTACCAACACCAGCCAAAGGTTTCTTCTCGATTTCAA
GATATCATTTCGTTTGGATCTATAAGGATTTAAGGGAACTATAGGGCAAA
TATGTGAGGTATTTTTGAGGTATTTTCAACACAAAAGCTCTCACTACAGG
ACATCTGTGTCAATGCAAATCTATATAAAATAAATCTGTGTCTTACGTAG
AAAGTATAGAGTGCTCTTAGCTTGAAACACAGTTGGGGTACTAAAAAATC
TGCAATATGTATAATCTATGTTGCTATCTCAAAAAAAAGGTATTGGGTTT
GTTATTTAATCTttaatatttctttactttttcttaatctttacAGGAAT
TTCTCAGATGACTCATTAAGCATGGTACGATTGACATTTATGGATGATCA
AGGAGGGACAACAAAAGAAGGACATCAAACCTTCTTAAACAAAACATtga
cgaaaaaaagaaataaaaatcattCATTACTGGAATCAAATTCCAGgtaa
attttcatttctttattcttaaaattttaataattcTTCCCTAAATCTAA
TTCATtaataatacacccctgtctcacagccctggtgacatttcttccca
cagtggggatgaaaattggTATCGAAATCTCAATGCgaatagaaaatcta
ttgttcttaGGTCCAGTGGTTCTTAAACTCAATATTTGTATTGTTGTGAA
CCATAAAAGTTTTGCTTTAATcctaaattttcattattttctcaTTAGAT
TTGACGACACATGTCTTGACAAATTCGCAAACAGATTCTAAATGAACTGA
AACTCGATAATGAAATTATGACATCAAATTACCgcaaattcaaggaaaag
ccaCCCACTGACGTGATGAGTGGTGCTAATTTGgcgaatcaaatcaaaat
ttaatgacaTTTATTGAATGCGCAAAACAAAGAACAAAACAAATCGATTT
CAATTTCATCCATTGTTGTCATGACAACACTGCAATCAAAATTATGATTG
GTAAAGCACTTTTGAATTACGTCACTCATCGAAGTTGCCCATTTTTGGTG
GTGTTAATTAGCTACAGAGTATCATATGTCGAGAGTTTGGAGTTTGATTT
TAGCGAGCTACAGACCAAAAAATAGAACATTAGTATTTTTATATCATGAT
AATAAATGCAAGtcgtttaaaggttttatttttacacaagtgttcccgtt
tcatatcagccacatatttcatatcaggacagtgtctgcttaTTGTTCCA
TTATGCTGAtagaagcaaaaaatgtttttcttttcttctttttggccaat
cttgctccatattcgtgtcaatccaatatgaaaaagcttgtgcattaaaa
ttgacgagtaagcaaaagatatcactcttatttaaaaacaaaacctttaa
cttgtTCATATTTAATTAATTTACAAGACAATTATTGAAACACTGAATAT
ATTTTGATGAATTCAACGATTTACAGATGTGATTTAGTGCGAATTACACG
ACTTATTTTTCTTTCCATATTTTATAGTGTATatttattgaaaacaaaat
tgatgaaaaagggaaatttaTAATAAAAGATATAAATATTGTGAGACTGt
aaatattatattttaaaaactaaaagatttatttattttcaaattataaa
gttTTAGTAAAAAGATATATATTGTGTACAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001995XLOC_001995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003575-exon-sc0000030-1491911889:824770..824865TCONS_00003575-exon-sc0000030-1491911889:824770..824865Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1510915933:824770..824865TCONS_00003575-exon-sc0000030-1510915933:824770..824865Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1575043694:824770..824865TCONS_00003575-exon-sc0000030-1575043694:824770..824865Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1491911889:825268..825367TCONS_00003575-exon-sc0000030-1491911889:825268..825367Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1510915933:825268..825367TCONS_00003575-exon-sc0000030-1510915933:825268..825367Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1575043694:825268..825367TCONS_00003575-exon-sc0000030-1575043694:825268..825367Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1491911889:825678..825731TCONS_00003575-exon-sc0000030-1491911889:825678..825731Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1510915933:825678..825731TCONS_00003575-exon-sc0000030-1510915933:825678..825731Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1575043694:825678..825731TCONS_00003575-exon-sc0000030-1575043694:825678..825731Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1491911889:826152..826688TCONS_00003575-exon-sc0000030-1491911889:826152..826688Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1510915933:826152..826688TCONS_00003575-exon-sc0000030-1510915933:826152..826688Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1575043694:826152..826688TCONS_00003575-exon-sc0000030-1575043694:826152..826688Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1491911889:827266..827415TCONS_00003575-exon-sc0000030-1491911889:827266..827415Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1510915933:827266..827415TCONS_00003575-exon-sc0000030-1510915933:827266..827415Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1575043694:827266..827415TCONS_00003575-exon-sc0000030-1575043694:827266..827415Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1491911889:827668..828605TCONS_00003575-exon-sc0000030-1491911889:827668..828605Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1510915933:827668..828605TCONS_00003575-exon-sc0000030-1510915933:827668..828605Clytia hemisphaericaexon
TCONS_00003575-exon-sc0000030-1575043694:827668..828605TCONS_00003575-exon-sc0000030-1575043694:827668..828605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:824770..828605 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.50736	0.0313651	0.619403	1.65049	0	0	0	0.332582	0	0.580075	0.90739	0	0	1.64648	0	0	0.960216	1.40552e-05	0	0	2.30264	0.237762	3.21099	6.22854	0	0.563269
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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