TCONS_00003574 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003574
Unique NameTCONS_00003574
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2064

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003574 ID=TCONS_00003574|Name=TCONS_00003574|organism=Clytia hemisphaerica|type=transcript|length=2064bp
GcgctttttttttgatttttatgtattGATTAATGATTAATGTAATTACG
AAGTTTTAATTAAAATGACGGATAAATGTAAGAACCAATCAGATTAGAGA
TAAGCAATCAAGTGACCGTTATATAGAGAGATTGGTCGAGATGACACGAT
CAGTATTTATCTGATGTCTGAACTGAGCACaactaaaattatacaaaata
taTTCAAGAGCTTAAACAAGTCTTGGGTGATTGTGATTTTATGATTAAGA
TATTTTATTTGGAACACTTTTGTTGTGGAAAAAAGAACGTTACAATTACG
GAAGAACGACATGGACACATTgaagatgattttgattttgacttcaTTAA
TGACGTCATACTCCAATGCCTTCCCAACAGTTATGAGGAAGAACAAACCA
AATTTTGCTGGAATTCCATCACTGGCTGTAGATATAATAGACGAAAGCCT
TTGCATAGATGACGCTAGTTGTAAGACTGAAGGTTATAAGTGCAACAAAG
CATTGCCCACTTGGCAATGTCAACAACCATGCAATAACAGACGTGACTGT
CGTTATGGAATGACTTGTGATGTGGAACAAGGTTTTTGTGGTGCTCCGAA
AACATTTGACGATATTTTGAATAAACAAGGTTGTCCGAAAATTCATAAAC
AACCATGCGCCACTAATACTGATTGTGCATGCGCAGATGCTGAGTATGTC
TGTGAGAAGGAATTGTTCAGCACGAAGAAAGAGTGCGTCTCCAAGAAACC
AATAcatgaacaaaagaaaaaacaagaggGAGAGACATGTCGTAAAAACT
CAGACTGTGAAGAATTATTTTACGCATGCGTTGATGGTACCTGTCAAGTA
GATTTCTCATCTTTTGGCGAAGATAGCAGCTTTATGGAAAACTTGTTTGG
AAAGAATGCAgtcaagaaagaaaaacagaaaagttgagATTCTTCAATCG
TTGGAAAACACATTCGAATGTTAAACGAATTTCTCAGATGACTCATTAAG
CATGGTACGATTGACATTTATGGATGATCAAGGAGGGACAACAAAAGAAG
GACATCAAACCTTCTTAAACAAAACATtgacgaaaaaaagaaataaaaat
cattCATTACTGGAATCAAATTCCAGATTTGACGACACATGTCTTGACAA
ATTCGCAAACAGATTCTAAATGAACTGAAACTCGATAATGAAATTATGAC
ATCAAATTACCgcaaattcaaggaaaagccaCCCACTGACGTGATGAGTG
GTGCTAATTTGgcgaatcaaatcaaaatttaatgacaTTTATTGAATGCG
CAAAACAAAGAACAAAACAAATCGATTTCAATTTCATCCATTGTTGTCAT
GACAACACTGCAATCAAAATTATGATTGGTAAAGCACTTTTGAATTACGT
CACTCATCGAAGTTGCCCATTTTTGGTGGTGTTAATTAGCTACAGAGTAT
CATATGTCGAGAGTTTGGAGTTTGATTTTAGCGAGCTACAGACCAAAAAA
TAGAACATTAGTATTTTTATATCATGATAATAAATGCAAGtcgtttaaag
gttttatttttacacaagtgttcccgtttcatatcagccacatatttcat
atcaggacagtgtctgcttaTTGTTCCATTATGCTGAtagaagcaaaaaa
tgtttttcttttcttctttttggccaatcttgctccatattcgtgtcaat
ccaatatgaaaaagcttgtgcattaaaattgacgagtaagcaaaagatat
cactcttatttaaaaacaaaacctttaacttgtTCATATTTAATTAATTT
ACAAGACAATTATTGAAACACTGAATATATTTTGATGAATTCAACGATTT
ACAGATGTGATTTAGTGCGAATTACACGACTTATTTTTCTTTCCATATTT
TATAGTGTATatttattgaaaacaaaattgatgaaaaagggaaatttaTA
ATAAAAGATATAAATATTGTGAGACTGtaaatattatattttaaaaacta
aaagatttatttattttcaaattataaagttTTAGTAAAAAGATATATAT
TGTGTACAAAAAAA
Run BLAST on NCBI

transcript from alignment at sc0000030:823634..828605+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003574 ID=TCONS_00003574|Name=TCONS_00003574|organism=Clytia hemisphaerica|type=transcript|length=4972bp|location=Sequence derived from alignment at sc0000030:823634..828605+ (Clytia hemisphaerica)
GcgctttttttttgatttttatgtattGATTAATGATTAATGTAATTACG
AAGTTTTAATTAAAATGACGGATAAATGTAAGAACCAATCAGATTAGAGA
TAAGCAATCAAGTGACCGTTATATAGAGAGATTGGTCGAGATGACACGAT
CAGTATTTATCTGATGTCTGAACTGAGCACaactaaaattatacaaaata
taTTCAAGAGCTTAAACAAGTCTTGGGTGATTGTGATTTTATGATTAAGA
TATTTTATTTGGAACACTTTTGTTGTGGAAAAAAGGTTTGTTGTGAATTA
TTTTGATTCTTGTTTATGGCGTACCGTACACGTATTTTCATCTTTTACGG
ATGCAGAAATTTAGAGATATTGCGACATTTATAGAAACAGTCGGATATGC
ATTCCGCTATAACTAGAATTTCTTGTCCTTTATGTCGCCTCATTAATTGT
ACCAACATCCTTATTTACGGAGGGTATGATATATTCCGCCGCGGATAAAG
TAATTTTCCGTCGTTAAAAATCAGAGTAGTCCGTTACTTTTGTTTTTACG
CATTAGGATGCGAAAAGTTGACATAGAGGATTGACATTAAGAATCGAATA
TTACGTTTTTTTATAcaagaacaaactgtataagaacatgaggcttcgat
tgctaaaaaatatgaacaagttaagaacattttaaggctttgtggactct
aaatacacaaaatatactccaaaatggcgaaaacaagaacatgttaagaa
cattttcaggctttaaactctgaaagtaaaatccattcgaaggcttcaaa
atttttactatgttctttaaaaagaacatGTATTACGTCAATTGAAGCTA
ACGGGATTCATAAGGAAAAAGTTTGCTGATGTTTCTattctttggttttc
ttgaatACTAATCGAATGTAATCAGAAGGAATTAGTTTAACGGTTCACCC
ATAAATAGATCTTTATGCTAACGAGCGAGAAATCTTTTTGATATATTAAA
AAGTAGCGACTTTCAATCGCTCGTTATTTGCGAATAGCCAATCAGAGCGT
GTATTTTATTCAACTAGCCAATCAGAATGCGTCTTTCTCATCTCACGGAT
GtgtaaaaagttacaaaaaaacCTTCGGAGGTATCCGGCCAAGAACAAAA
GACAGGGCAATTAGTATCTATTAACTGTTTTCGCTGAACAATCAACATTG
TCGAATATTTTTCTCTAACTATGACTATAGGGGtatataagaaaaatatc
caTAGCTTTTTTTTTACTATTGATACAGTTATCTTCAAGGAAGATCTCTT
ATCCTTTGTTTAACACAGCATTTAAGTCTTGGCACTTATTATTGCAAGAC
TTTGATAAGCTTTTTTTTTACTATTGATACAGTTATCTTCAAGGAAGATC
TCTTATCCTTTGTTTAACACAGCATTTAAGTCTTGGCACTTATTATTGCA
AGACTTTGATAAGCTTTTTTTTACTACGCGCTTATAAAGAGAGTATAACT
ATATAATATTTGTAAAGTAAGTGTATTTATTTTTATGCATTCGAATTTTC
AAGGACTTTAAAATTTGAGGATCTGGACTGATTTCGACTGATTGATAAAA
TTTgaccaatatttttttctcgttaTTTTTGTAGAACGTTACAATTACGG
AAGAACGACATGGACACATTgaagatgattttgattttgacttcaTTAAT
GACGTCATACTCCAATGCCTTCCCAACAGTTATGGTGAGTTCTGATTGGT
CGAATACAGTATTATTGAATCTCTTACTCTTCAAATGCGAATCTGCTGGT
TTCAAACTTGAAAGTGTGGCTGTTTGTTTCCCAGCTGgtaacaacgttgt
ttcaacgttcatctaaccttatatggacgttgtgaacattagactAACGT
TGGAACAACGTTGTTTGCCAGGTTGGTTATAGGGGTTGTAGGGTATCGAA
GTAGTTTTGGCTGGGGTATTTTGTATGCTTTAGTCTTTTGAGTTTAATGG
TCGATTCATTATAGcgtaacatttttttaaatttattcttataGAGGAAG
AACAAACCAAATTTTGCTGGAATTCCATCACTGGCTGTAGATATAATAGT
AAGTTGAAAAACAACGAAATTGACATCTGATTAAAAATGTGATTATGTAT
TCATTAAATCTAATGAGTATAACGGCATTCCATTTCAACGACTAGCTTCC
TTTTGTTTATAAACAGTTATGATTGGAATCTTAAAAAAACATATTCTGTG
TCTcgtcattctattggttaaaatcTAGGTGGAAAATATTGATTATAAAA
AAGATTACAAGAACAGCCTTAACAATTTTCAAAGTTCTTTGCCCCCCCCT
ATTGGTTGAATTGTAGGGTCAAAGAAACATTATATGTACGGAACAGAGAT
TCTTTCGGCTAGGCCTTTCGGAATGTTTCGCGCTTAAGAAAAGATTATAC
AATTAGCATCTCCaaatattcaaaaatcaaattttttcctaaattgctac
attttcttatttctttagGACGAAAGCCTTTGCATAGATGACGCTAGTTG
TAAGACTGAAGGTTATAAGTGCAACAAAGCATTGCCCACTTGGCAATGTC
AACAACCATGCAATAACAGACGTGACTGTCGTTATGGAATGACTTGTGAT
GTGGAACAAGGTTTTTGTGGTGCTCCGAAAACATTTGACGATATTTTGAA
TAAACAAGGTTGTCCGAAAATTCATAAACAACCATGCGCCACTAATACTG
ATTGTGCATGCGCAGATGCTGAGTATGTCTGTGAGAAGGAATTGTTCAGC
ACGAAGAAAGAGTGCGTCTCCAAGAAACCAATAcatgaacaaaagaaaaa
acaagaggGAGAGACATGTCGTAAAAACTCAGACTGTGAAGAATTATTTT
ACGCATGCGTTGATGGTACCTGTCAAGTAGATTTCTCATCTTTTGGCGAA
GATAGCAGCTTTATGGAAAACTTGTTTGGAAAGAATGCAgtcaagaaaga
aaaacagaaaagttgagATTCTTCAATCGTTGGAAAACACATTCGAATGT
TAAACGTAAGTCATTTATATTCTACACATACATTCAAAAGTGAAAATTGC
ATTGCTAAAAATGTCTAGATCCGACTTATAATAAGTTATATTAGGCTCTA
TAAGCAAGCAAGCGAGGGATTAAGGAGTATTAAATTGATATCTGCTGGAT
TCTCGCCACGAGCCTCATTGAAAAGAGATTAATTGGAAGCTAAATTTAGG
TCAAATTTTAAGGTTAAGCCTAATCCGTGGATCTCTGAAACGAACGGAGG
TACCAACACCAGCCAAAGGTTTCTTCTCGATTTCAAGATATCATTTCGTT
TGGATCTATAAGGATTTAAGGGAACTATAGGGCAAATATGTGAGGTATTT
TTGAGGTATTTTCAACACAAAAGCTCTCACTACAGGACATCTGTGTCAAT
GCAAATCTATATAAAATAAATCTGTGTCTTACGTAGAAAGTATAGAGTGC
TCTTAGCTTGAAACACAGTTGGGGTACTAAAAAATCTGCAATATGTATAA
TCTATGTTGCTATCTCAAAAAAAAGGTATTGGGTTTGTTATTTAATCTtt
aatatttctttactttttcttaatctttacAGGAATTTCTCAGATGACTC
ATTAAGCATGGTACGATTGACATTTATGGATGATCAAGGAGGGACAACAA
AAGAAGGACATCAAACCTTCTTAAACAAAACATtgacgaaaaaaagaaat
aaaaatcattCATTACTGGAATCAAATTCCAGgtaaattttcatttcttt
attcttaaaattttaataattcTTCCCTAAATCTAATTCATtaataatac
acccctgtctcacagccctggtgacatttcttcccacagtggggatgaaa
attggTATCGAAATCTCAATGCgaatagaaaatctattgttcttaGGTCC
AGTGGTTCTTAAACTCAATATTTGTATTGTTGTGAACCATAAAAGTTTTG
CTTTAATcctaaattttcattattttctcaTTAGATTTGACGACACATGT
CTTGACAAATTCGCAAACAGATTCTAAATGAACTGAAACTCGATAATGAA
ATTATGACATCAAATTACCgcaaattcaaggaaaagccaCCCACTGACGT
GATGAGTGGTGCTAATTTGgcgaatcaaatcaaaatttaatgacaTTTAT
TGAATGCGCAAAACAAAGAACAAAACAAATCGATTTCAATTTCATCCATT
GTTGTCATGACAACACTGCAATCAAAATTATGATTGGTAAAGCACTTTTG
AATTACGTCACTCATCGAAGTTGCCCATTTTTGGTGGTGTTAATTAGCTA
CAGAGTATCATATGTCGAGAGTTTGGAGTTTGATTTTAGCGAGCTACAGA
CCAAAAAATAGAACATTAGTATTTTTATATCATGATAATAAATGCAAGtc
gtttaaaggttttatttttacacaagtgttcccgtttcatatcagccaca
tatttcatatcaggacagtgtctgcttaTTGTTCCATTATGCTGAtagaa
gcaaaaaatgtttttcttttcttctttttggccaatcttgctccatattc
gtgtcaatccaatatgaaaaagcttgtgcattaaaattgacgagtaagca
aaagatatcactcttatttaaaaacaaaacctttaacttgtTCATATTTA
ATTAATTTACAAGACAATTATTGAAACACTGAATATATTTTGATGAATTC
AACGATTTACAGATGTGATTTAGTGCGAATTACACGACTTATTTTTCTTT
CCATATTTTATAGTGTATatttattgaaaacaaaattgatgaaaaaggga
aatttaTAATAAAAGATATAAATATTGTGAGACTGtaaatattatatttt
aaaaactaaaagatttatttattttcaaattataaagttTTAGTAAAAAG
ATATATATTGTGTACAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001995XLOC_001995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003574-exon-sc0000030-1491911889:823634..823918TCONS_00003574-exon-sc0000030-1491911889:823634..823918Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1510915933:823634..823918TCONS_00003574-exon-sc0000030-1510915933:823634..823918Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1575043694:823634..823918TCONS_00003574-exon-sc0000030-1575043694:823634..823918Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1491911889:825268..825367TCONS_00003574-exon-sc0000030-1491911889:825268..825367Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1510915933:825268..825367TCONS_00003574-exon-sc0000030-1510915933:825268..825367Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1575043694:825268..825367TCONS_00003574-exon-sc0000030-1575043694:825268..825367Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1491911889:825678..825731TCONS_00003574-exon-sc0000030-1491911889:825678..825731Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1510915933:825678..825731TCONS_00003574-exon-sc0000030-1510915933:825678..825731Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1575043694:825678..825731TCONS_00003574-exon-sc0000030-1575043694:825678..825731Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1491911889:826152..826688TCONS_00003574-exon-sc0000030-1491911889:826152..826688Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1510915933:826152..826688TCONS_00003574-exon-sc0000030-1510915933:826152..826688Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1575043694:826152..826688TCONS_00003574-exon-sc0000030-1575043694:826152..826688Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1491911889:827266..827415TCONS_00003574-exon-sc0000030-1491911889:827266..827415Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1510915933:827266..827415TCONS_00003574-exon-sc0000030-1510915933:827266..827415Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1575043694:827266..827415TCONS_00003574-exon-sc0000030-1575043694:827266..827415Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1491911889:827668..828605TCONS_00003574-exon-sc0000030-1491911889:827668..828605Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1510915933:827668..828605TCONS_00003574-exon-sc0000030-1510915933:827668..828605Clytia hemisphaericaexon
TCONS_00003574-exon-sc0000030-1575043694:827668..828605TCONS_00003574-exon-sc0000030-1575043694:827668..828605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:823634..828605 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.765178	1.35566	0	0.47295	0.401606	0	0.965899	1.07817	1.19864	0.624004	0.669526	2.45752	1.86619	3.54827	1.81495	0.31039	0.457324	0.61385	0.201544	0.719535	77.3751	73.6611	1.21162	1.1623
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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