TCONS_00003562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003562
Unique NameTCONS_00003562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1960

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003562 ID=TCONS_00003562|Name=TCONS_00003562|organism=Clytia hemisphaerica|type=transcript|length=1960bp
gaaagctctaaaacagcttATTAAAAATAATGACGAGTCAAAGATATCCG
ATACCCTTTCAAACAAAAGGACAAACAATATTACAAACAAAAGTTTACAa
acaaaagtttataattatcaAGAGGTTTTACATTTCAATATGCAAAGTCA
CgaaagatataaaaagcttATTCTACCTTATACTATacaagtcaaaacaa
aaacgtAATAATAAAATGTCGATTAAAACTTATAAAACGGTTGAATTTTC
AAAGAAGTCTACCCATcgaatttatcaaaaaatactCGAGTCCAAAATAT
TCCCTAAGAGTATCAAAAGTTTCCACAGTCACAGTTATTCACCAACATTC
TTTGACTTTTTCACGGATAATTTTCCTCTTGAATTCAGGGCTAGAAGCCT
GGTTGAGAAGATCTCGATAGACTGGCAAACGTTGGGTCATTTGAAAACAC
CAACGGTCACGAACCTGTCTCACCAAATTGAGATCCACTTCTGTCACCAG
TAACCCATCATTGACCCGTGATAGACCTGGTGTGCGGCTCCCATTAGGAG
CGGCTACGTAACTGGACCcataaaaatggccaaaatcatTATGAGCAGGT
TTTCCATCGGCCGAAGTGAACTCATTCTCAAAATGCTCTGTACCAACACG
GTTGATGGCAACTGTAAAGTAGCAATTAGCAATAGCATGACATCTAGCTT
CAATGGGCCATAAAGGCTCACTCAATGCACCAATAGTGGCTGATGGGTTG
AAGACAATCTCAGCTCCATTTAAACTATATCCTAACCAATTCAACGGGTG
ATGTCGACCATAACAGATATTGATACCAATCATACCAAATTGAGTTTCAA
AGACAGGATGGCCAAGCTCACTTTCCGAATAATAGGTAGATTCATTAAAA
TCACCTACTCTCGGGATGTGGTTCTTACGGCTTTTCCCAATGACACGTCC
AAAGTTTGAGATGACAACAGCAGTATTCCNGAAGTGAACTCATTCTCAAA
ATGCTCTGTACCAACACGGTTGATGGCAACTGTAAAGTAGCAATTAGCAA
TAGCATGACATCTAGCTTCAATGGGCCATAAAGGCTCACTCAATGCACCA
ATAGTGGCTGATGGGTTGAAGACAATCTCAGCTCCATTCAAACTATATCC
TAACCAATTCAACGGGTGATGTCGACCATAACAGATATTGATACCAATCA
TACCAAATTGAGTTTCAAAGACAGGATGGCCAAGCTCACTTTCCGAATAA
TAGGTAGATTCATTAAAATCACCTACTCTCGGGATGTGGTTCTTACGGCT
TTTCCCAATGACACGTCCAAAGTTTGAGATGACAACAGCAGTATTCCAGA
TTGTGTCCTGGTGTTCTTCATCTCTTTCCAGAATAGGAGAAACAATGACC
ATGTTCCATTTCTTGGCTAATTCTTGTAAAAACAAGGTTGTAGCACCATT
TTCAGCTGACTCAGCAAATTGCATCCAAGGATGTTTCTCGCGTGTACAAA
AAGCAAAAGGCATGGTCCATGCTTCTTGTAAACAAAGCACATTGACACCA
GATTCCCCAGCAGCGTCAATCATTAATCCCAAACGGTCATGCATTGCTTT
GATTTGTTCACCAATAGGTGCACTGGTTGGAAGCACAATCTTATTTTGGA
TTGCACCAATACGAACCATTCTTGGAGCTCGTGTAGATTCTGGTTTTGCT
GTCATCTTGTAGCCAACAACTTCAAAATCATTCTTTGAAGCATTGTCTAA
GACATTTTGAGGGATGTCGATTTTTTCACATGGCGAACCGTATAGGATTC
TTTTTACCTCAGCCAAGTCTTCTCCGTCCAATTTGTCTTCCAAGACTTTC
TCCAAGCTGTGGATTTGCTCGTTGGATGCCATCTTATTGTTTTTCTTACA
GATAAACTAAACAGaagttttataaaatattaGTAAATCATTTCGAATTT
CAATCTCGTG
Run BLAST on NCBI

transcript from alignment at sc0000030:596734..598693+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003562 ID=TCONS_00003562|Name=TCONS_00003562|organism=Clytia hemisphaerica|type=transcript|length=1960bp|location=Sequence derived from alignment at sc0000030:596734..598693+ (Clytia hemisphaerica)
gaaagctctaaaacagcttATTAAAAATAATGACGAGTCAAAGATATCCG
ATACCCTTTCAAACAAAAGGACAAACAATATTACAAACAAAAGTTTACAa
acaaaagtttataattatcaAGAGGTTTTACATTTCAATATGCAAAGTCA
CgaaagatataaaaagcttATTCTACCTTATACTATacaagtcaaaacaa
aaacgtAATAATAAAATGTCGATTAAAACTTATAAAACGGTTGAATTTTC
AAAGAAGTCTACCCATcgaatttatcaaaaaatactCGAGTCCAAAATAT
TCCCTAAGAGTATCAAAAGTTTCCACAGTCACAGTTATTCACCAACATTC
TTTGACTTTTTCACGGATAATTTTCCTCTTGAATTCAGGGCTAGAAGCCT
GGTTGAGAAGATCTCGATAGACTGGCAAACGTTGGGTCATTTGAAAACAC
CAACGGTCACGAACCTGTCTCACCAAATTGAGATCCACTTCTGTCACCAG
TAACCCATCATTGACCCGTGATAGACCTGGTGTGCGGCTCCCATTAGGAG
CGGCTACGTAACTGGACCcataaaaatggccaaaatcatTATGAGCAGGT
TTTCCATCGGCCGAAGTGAACTCATTCTCAAAATGCTCTGTACCAACACG
GTTGATGGCAACTGTAAAGTAGCAATTAGCAATAGCATGACATCTAGCTT
CAATGGGCCATAAAGGCTCACTCAATGCACCAATAGTGGCTGATGGGTTG
AAGACAATCTCAGCTCCATTTAAACTATATCCTAACCAATTCAACGGGTG
ATGTCGACCATAACAGATATTGATACCAATCATACCAAATTGAGTTTCAA
AGACAGGATGGCCAAGCTCACTTTCCGAATAATAGGTAGATTCATTAAAA
TCACCTACTCTCGGGATGTGGTTCTTACGGCTTTTCCCAATGACACGTCC
AAAGTTTGAGATGACAACAGCAGTATTCCNGAAGTGAACTCATTCTCAAA
ATGCTCTGTACCAACACGGTTGATGGCAACTGTAAAGTAGCAATTAGCAA
TAGCATGACATCTAGCTTCAATGGGCCATAAAGGCTCACTCAATGCACCA
ATAGTGGCTGATGGGTTGAAGACAATCTCAGCTCCATTCAAACTATATCC
TAACCAATTCAACGGGTGATGTCGACCATAACAGATATTGATACCAATCA
TACCAAATTGAGTTTCAAAGACAGGATGGCCAAGCTCACTTTCCGAATAA
TAGGTAGATTCATTAAAATCACCTACTCTCGGGATGTGGTTCTTACGGCT
TTTCCCAATGACACGTCCAAAGTTTGAGATGACAACAGCAGTATTCCAGA
TTGTGTCCTGGTGTTCTTCATCTCTTTCCAGAATAGGAGAAACAATGACC
ATGTTCCATTTCTTGGCTAATTCTTGTAAAAACAAGGTTGTAGCACCATT
TTCAGCTGACTCAGCAAATTGCATCCAAGGATGTTTCTCGCGTGTACAAA
AAGCAAAAGGCATGGTCCATGCTTCTTGTAAACAAAGCACATTGACACCA
GATTCCCCAGCAGCGTCAATCATTAATCCCAAACGGTCATGCATTGCTTT
GATTTGTTCACCAATAGGTGCACTGGTTGGAAGCACAATCTTATTTTGGA
TTGCACCAATACGAACCATTCTTGGAGCTCGTGTAGATTCTGGTTTTGCT
GTCATCTTGTAGCCAACAACTTCAAAATCATTCTTTGAAGCATTGTCTAA
GACATTTTGAGGGATGTCGATTTTTTCACATGGCGAACCGTATAGGATTC
TTTTTACCTCAGCCAAGTCTTCTCCGTCCAATTTGTCTTCCAAGACTTTC
TCCAAGCTGTGGATTTGCTCGTTGGATGCCATCTTATTGTTTTTCTTACA
GATAAACTAAACAGaagttttataaaatattaGTAAATCATTTCGAATTT
CAATCTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001990XLOC_001990Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003562-exon-sc0000030-1491911889:596734..598693TCONS_00003562-exon-sc0000030-1491911889:596734..598693Clytia hemisphaericaexon
TCONS_00003562-exon-sc0000030-1510915933:596734..598693TCONS_00003562-exon-sc0000030-1510915933:596734..598693Clytia hemisphaericaexon
TCONS_00003562-exon-sc0000030-1575043694:596734..598693TCONS_00003562-exon-sc0000030-1575043694:596734..598693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:596734..598693 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0480728	0.187514	0.435444	0.479266	5.89943	4.50812	9.14717	8.2163	13.4088	10.6378	11.9812	11.6539	8.56842	10.0605	19.2173	18.5139	16.5283	17.4959	15.1263	13.85	16.5932	17.5474	68.7889	91.8043	41.7555	40.6284	369.401	297.224	10.6181	10.0027
Blast
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BLAST of TCONS_00003562 vs. Swiss-Prot (Human)
Match: BUP1 (Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 7.563e-141
Identity = 196/294 (66.67%), Postives = 230/294 (78.23%), Query Frame = -1 
Query:  977 SLEKVLEDKLDGEDLAEVKRILYGSPCEKIDIPQNVLDNASKNDFEVVGYKMTAKPESTRAPRMVRIGAIQNKIVLPTSAPIGEQIKAMHDRLGLMIDAAGESGVNVLCLQEAWTMPFAFCTREKHPWMQFAESAENGATTLFLQELAKKWNMVIVSPILERDEEHQDTIWNTAVVISNFGRVIGKSRKNHIPRVGDFNESTYYSESELGHPVFETQFGMIGINICYGRHHPLNWLGYSLNGAEIVFNPSATIGALSEPLWPIEARCHAIANCYFTVAINRVGTEHFENEFTSG 1858
            SLE+ LE  L   DL EVKR+LYG    K+D+P+   + AS+ DFE+ GY   A  E  R PR+V +G +QN+I LP +AP+ EQ+ A+H R+  +++ A   GVN++C QEAWTMPFAFCTREK PW +FAESAE+G TT F Q+LAK  +MV+VSPILERD EH D +WNTAVVISN G V+GK+RKNHIPRVGDFNESTYY E  LGHPVF+TQFG I +NICYGRHHPLNWL YS+NGAEI+FNPSATIGALSE LWPIEAR  AIAN  FT AINRVGTEHF NEFTSG
Sbjct:    8 SLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFEAAEEQLRRPRIVHVGLVQNRIPLPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKNHDMVVVSPILERDSEHGDVLWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFTCAINRVGTEHFPNEFTSG 301

HSP 2 Score: 308.531 bits (789), Expect = 1.027e-97
Identity = 149/206 (72.33%), Postives = 166/206 (80.58%), Query Frame = -3 
Query:  360 NTAVVISNFGRVIGKSRKNHIPRVGDFNESTYYSESELGHPVFETQFGMIGINICYGRHHPLNWLGYSLNGAEIVFNPSATIGALSEPLWPIEARCHAIANCYFTVAINRVGTEHFENEFTSADGKPAHNDFGHFYGSSYVAAPNGSRTPGLSRVNDGLLVTEVDLNLVRQVRDRWCFQMTQRLPVYRDLLNQASSPEFKRKIIRE 977
            NTAVVISN G V+GK+RKNHIPRVGDFNESTYY E  LGHPVF+TQFG I +NICYGRHHPLNWL YS+NGAEI+FNPSATIGALSE LWPIEAR  AIAN  FT AINRVGTEHF NEFTS DGK AH DFG+FYGSSYVAAP+ SRTPGLSR  DGLLV ++DLNL +QV D W F+MT R  +Y   L +A    +   I++E
Sbjct:  179 NTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFTCAINRVGTEHFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDSSRTPGLSRSRDGLLVAKLDLNLCQQVNDVWNFKMTGRYEMYARELAEAVKSNYSPTIVKE 384
The following BLAST results are available for this feature:
BLAST of TCONS_00003562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BUP17.563e-14166.67Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1... [more]
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