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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003540 ID=TCONS_00003540|Name=TCONS_00003540|organism=Clytia hemisphaerica|type=transcript|length=712bp
ACGacgaaaaacagaaaaaagagcATGCAATATTGATGACACTGTTACAA
CGTAAACATTGACAATAAGAGAGATTCTGCAATTGGAAAACCACATGAGA
GatttgaaGAAAGAACCGATTACATTTTCTATAACCGGGATCTTATCGAC
TGGGACATCAAGTCGAAGCTGTGATAATGTTGTCGCATCGAGAGCAATGC
ATTTTGCAGACCGAAGCTCACCACCATCTACCGTTCATAGTTATCGTACA
GAAGTCATAAAATCCAGACCAGAATGTTATGTTAGACGCGAGGAAGAGAG
ATATTTTGCAGACTATTTTGGAAACAAGCGAAAAATGTCGCATTCACCAC
CTGAACTGTATGCGCCCGTGCGCTCTGATGCAGTTTTTGAGGAATATCAT
GAATCAAGGGAAAGCACGCCCTCTCCGCCCAAAATATTTCGCCCCAGCTT
GTACACCCGGCACTCAGATGATAAATACCATCCAATATCATCACCACCCT
TGACTATACCAAACAGCCGATCAAATCACGAAACAACTATGACGTCATCT
CAAAATGGTAGATTCCGCCCACCGCCCTTCTTTGATACAGTCCTTACATT
ACGCAAACGTTTATATTATTTGGGTGGTAAAGAGTTTTCGGTTGATGAAC
CTCCCTCAGATCGAAATGTTCACAAAATGTGGCGTTCAATTGAAAAACAC
AAAGTAGACTAT Run BLAST on NCBI transcript from alignment at sc0000030:138653..141462+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003540 ID=TCONS_00003540|Name=TCONS_00003540|organism=Clytia hemisphaerica|type=transcript|length=2810bp|location=Sequence derived from alignment at sc0000030:138653..141462+ (Clytia hemisphaerica)
ACGacgaaaaacagaaaaaagagcATGCAATATTGATGACACTGTTACAA
CGTAAACATTGACAATAAGAGAGATTCTGCAATTGGAAAACCACATGAGA
GGTATGTACCATCTCGTTGGTAATTTTCACACCTTTAATTTGTCGGTATA
CTTTCAACATTAACAAAACCACATGGCATGAAATATTAAATTGACATTGA
GATAAATTTGTTGACTTTAGACAGGTTGGATTGAACGTGTATTGCAATGG
GAACAGTGAAAGGTAAAATGCGGTTTTGATGTTATTGTTTCACACTTGTT
AATTGTTTCGGGGTAATTATTGTTTgtcgaatttttttctcttcgccttt
atatgtgattttttcaattttactgaaattattcattattaaatttttaa
tttattttttctttacgaaaaaaataatactatGAACCATGAAACTATGA
AATAAAatcttaaagattttattttaagaTAAGTTTTCCCGTtattcata
tcagacacatatttcataccgGGACATtataaattagattttttccagAC
AAACTATAAATTAAACTTAATTGAAGATTAAGAACAACAAgaaatataca
cgttttttataagaacaagctatgcttcgatggccaaaatggtaagaaca
agttaagaacatttcatggctttgcggactccaaaatactaagaaaatag
acaaaaatactcaaaacatgacgaaaataagaacatgttaagaaggcttt
aaaaattttggatgttctcttaaaaaaacgtgtaaataagAACAGTTTGA
GAACAAACTTGATTGAGTAATCAGTAATCAAAGTTTAAAATgttaattaa
aaacaaaacatttgcaccttttttctataagaacatcaaaaaattttgaa
gccttcggatgttcttaactattggtgtttcaagcctaaaaatgttgtta
acgtgttcttattttcaccattttgtgaccattattgcctattttcctaa
gaaatcaaaaccttaaaatattcttaacttgttcttaatattttggccat
caaagccttatgttcttatatagtttgttcttatataaaaaacgtgtagt
tcaCGTTAGGTAAGAATGATTGAAAATGAAGGTGAAAATTAAAGGAGAAA
GAAAAATCAACAGAAGGGGGTAAAAATATAAACCGACCAATCAACCAATT
AAAAGAGTCAACAAAGAATTTATTAATTATAAACAATCACACGTAGTAAA
TATCAAATCGTTAAACCACCCGTTGCTTAATGACCGCGAAATTGTTGgtc
acaaaatcaaaaagaaaaaaaaatacgtgTAAAAAGTCAATACGGAACAA
AAGGTAGTGATTTTACAATCTTACCTTCCGGACGTTTATTGAACGTTATA
AAAACATGATGCTTGAATGTTTATTTAGGATATGTTTGAATAACATCCAT
TTAACATACGACCCAGAATCATGAGGTATGAAAGCCTCGTGTATAAATAC
AACAAAATTCGTTCTTATTTGTGATATACATATATACGCAGTACAGATCT
TCAAACCGCATTTAATCAGTAAGAATTCAAGCTAAGTAGAATCGCACGCG
ATTCGCCAAGAgaagaagaaatagaaaaatatttttactatgGGTAAGAA
TTTAATTGATTTTGCACAGGTCATActgaaatacacgcttttttataaga
attgtgtttttcaatttcatcatggatatggtttttaacattttgggaaa
aatcatcctgaaattaTTCTtacttacagtattcttaggttaggatctaA
ATCTTTGGCATTTTACAGTAAGAAATACTCTCAAATTGCATTCTTCAGct
accaaatttcatgatggtgatGTTTTTAGCACATTCTTATTTTTCGGCTT
ATTAAGTCTTATAGAATACATTcacataaaaaacgtgtacccaaAACGTG
TTTTTGATCAATTGAAGCTAAACCTTGACCTTGACGTGAAACAAACAACG
TTAAACTTCCATTCTTTATATCCCTGGGTGGATAAgctattcaaattatt
ttgataatttttaagagccgggtttttattttatcccTGAAGAGTACTAA
TTCAACTTTCAGGTGATTGAGAGTTTTTCGAATTTAACATCATAAGAACA
CGGCTAGCCTTAAAATCTACGACAttaatgtttaattttttatttttaga
tttgaaGAAAGAACCGATTACATTTTCTATAACCGGGATCTTATCGACTG
GGACATCAAGTCGAAGCTGTGATAATGTTGTCGCATCGAGAGCAATGCAT
TTTGCAGACCGAAGCTCACCACCATCTACCGTTCATAGTTATCGTACAGA
AGTCATAAAATCCAGACCAGAATGTTATGTTAGACGCGAGGAAGAGAGAT
ATTTTGCAGACTATTTTGGAAACAAGCGAAAAATGTCGCATTCACCACCT
GAACTGTATGCGCCCGTGCGCTCTGATGCAGTTTTTGAGGAATATCATGA
ATCAAGGGAAAGCACGCCCTCTCCGCCCAAAATATTTCGCCCCAGCTTGT
ACACCCGGCACTCAGATGATAAATACCATCCAATATCATCACCACCCTTG
ACTATACCAAACAGCCGATCAAATCACGAAACAACTATGACGTCATCTCA
AAATGGTAGATTCCGCCCACCGCCCTTCTTTGATACAGTCCTTACATTAC
GCAAACGTTTATATTATTTGGGTGGTAAAGAGTTTTCGGTTGATGAACCT
CCCTCAGATCGAAATGTTCACAAAATGTGGCGTTCAATTGAAAAACACAA
AGTAGACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003540-exon-sc0000030-1491911889:138653..138753 | TCONS_00003540-exon-sc0000030-1491911889:138653..138753 | Clytia hemisphaerica | exon |
| TCONS_00003540-exon-sc0000030-1510915933:138653..138753 | TCONS_00003540-exon-sc0000030-1510915933:138653..138753 | Clytia hemisphaerica | exon |
| TCONS_00003540-exon-sc0000030-1575043694:138653..138753 | TCONS_00003540-exon-sc0000030-1575043694:138653..138753 | Clytia hemisphaerica | exon |
| TCONS_00003540-exon-sc0000030-1491911889:140852..141462 | TCONS_00003540-exon-sc0000030-1491911889:140852..141462 | Clytia hemisphaerica | exon |
| TCONS_00003540-exon-sc0000030-1510915933:140852..141462 | TCONS_00003540-exon-sc0000030-1510915933:140852..141462 | Clytia hemisphaerica | exon |
| TCONS_00003540-exon-sc0000030-1575043694:140852..141462 | TCONS_00003540-exon-sc0000030-1575043694:140852..141462 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:138653..141462 + |
Blast
The following BLAST results are available for this feature:
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