TCONS_00003536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003536
Unique NameTCONS_00003536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003536 ID=TCONS_00003536|Name=TCONS_00003536|organism=Clytia hemisphaerica|type=transcript|length=557bp
tcttttctcttttcttttctcattcctttgaatttttcttattatttatt
ctttatatGTTTACAcaagaaatttgaatgaaaataatatGCTTTCTTTT
GTGAGAAAATTGATCTTTCTGTGAAGTTTTTTATGGAATGGATGGTATGA
GGGAttagaatataaaaaaaatttagtgtTTGTTTATAGAAGAAAAAACC
AAAATGAGTAAAGATTTTCAGTGAATAGAAACAAAATTTTATGTGTCTTT
AGTTAAAAATGGCTTCTGAGGAGTATGCTTGATCGTCTGCTGCGCGAcct
ggaaaagttttgaaaggagGAAAAGGTGCATATTGTTGTATACCCGAATG
CAAGAGCAGTTTTTATAACATTGACATGACCAAAACTGAAATTGGATTTT
TCAAGATCCCAACTAACCCTAAACAAAATCCACAATGGAAACGAATCATT
TACCGGTATCGACGAAAGGGAGGAAAAGATAAGTTCAAAATCACATCTAC
AACAGTTATCTgtgaatttcattttaaagcagAGGACATTAAAGTCACCC
TTGGAAC
Run BLAST on NCBI

transcript from alignment at sc0000028:934114..934670

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003536 ID=TCONS_00003536|Name=TCONS_00003536|organism=Clytia hemisphaerica|type=transcript|length=557bp|location=Sequence derived from alignment at sc0000028:934114..934670 (Clytia hemisphaerica)
GTTCCAAGGGTGACTTTAATGTCCTctgctttaaaatgaaattcacAGAT
AACTGTTGTAGATGTGATTTTGAACTTATCTTTTCCTCCCTTTCGTCGAT
ACCGGTAAATGATTCGTTTCCATTGTGGATTTTGTTTAGGGTTAGTTGGG
ATCTTGAAAAATCCAATTTCAGTTTTGGTCATGTCAATGTTATAAAAACT
GCTCTTGCATTCGGGTATACAACAATATGCACCTTTTCctcctttcaaaa
cttttccaggTCGCGCAGCAGACGATCAAGCATACTCCTCAGAAGCCATT
TTTAACTAAAGACACATAAAATTTTGTTTCTATTCACTGAAAATCTTTAC
TCATTTTGGTTTTTTCTTCTATAAACAAacactaaattttttttatattc
taaTCCCTCATACCATCCATTCCATAAAAAACTTCACAGAAAGATCAATT
TTCTCACAAAAGAAAGCatattattttcattcaaatttcttgTGTAAACa
tataaagaataaataataagaaaaattcaaaggaatgagaaaagaaaaga
gaaaaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001978XLOC_001978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003536-exon-sc0000028-1491911889:934114..934670TCONS_00003536-exon-sc0000028-1491911889:934114..934670Clytia hemisphaericaexon
TCONS_00003536-exon-sc0000028-1510915933:934114..934670TCONS_00003536-exon-sc0000028-1510915933:934114..934670Clytia hemisphaericaexon
TCONS_00003536-exon-sc0000028-1575043694:934114..934670TCONS_00003536-exon-sc0000028-1575043694:934114..934670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:934114..934670 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.398824	0.398938	0.304466	0.506242	0.674981	0.254622	0	0	1.38576	1.57495	0.981389	0.506793	0.0849425	0	0.0671579	0	0	0	0	0.169408	0	0.149496	0.145209	0	0.940726	1.60938	0.279581	0	0	0.123585
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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