TCONS_00003532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003532
Unique NameTCONS_00003532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length736

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003532 ID=TCONS_00003532|Name=TCONS_00003532|organism=Clytia hemisphaerica|type=transcript|length=736bp
TTNTTACTCGCATTACCACAAATCACACAATTAGATGCTACCATGACCAG
ATAACGTCTAGAAAACTTTGAATGAATTTAGCTAAACTGTTAACTAGCTC
TCACTCTCCCTTGAGAGAGTTTGAACCATTTGCGGAAGAAACATCTAATT
ACTTAACATAATCATGACATAATGTAGCCTGGCCTTTAAAAAAGATCTCA
AATATTCTTTTAGGACTAGCTCCTGGTATTTGGCATTATTATTAAAATCT
AATGAGAGCTTCAATCAATATACATTTAGCATCTAGAGGAACAACCGTTT
CAGTGACGCGCTCTATAGACTTTTAGTACGTGGTATCATAAGCGAATTTC
TTACCACGAGAAAAATTTTCCTGCAATTTTAtagcattcattttttttaC
CTTATCGGGGCGGGGGGGTCAGGTGAGTCGGGATAATTTTGGAagttcaa
acttgaaaaaaaaaatactcagAATCTGTAGGGATTTCCTGTCTTATGTG
TGAgtgttgaaagaatttgaaaacGTATGAGATTGGGCAAATGTTTTGTA
GGGTGATGAAAAAGTTGGGGTACATTTGATCTTCCCCTGAAAATATGGAT
CACTttcacaaaacttttttttccccGATGAGGTATTTTAGGGTCATTTA
TTCATATTTCGCACTTTGTACATATTGTTATATAAGAATATGTTCGTTTC
ACTTTAAAATACATTTTCGTTTTTCCTTGTCATCGA
Run BLAST on NCBI

transcript from alignment at sc0000028:694511..695246

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003532 ID=TCONS_00003532|Name=TCONS_00003532|organism=Clytia hemisphaerica|type=transcript|length=736bp|location=Sequence derived from alignment at sc0000028:694511..695246 (Clytia hemisphaerica)
TCGATGACAAGGAAAAACGAAAATGTATTTTAAAGTGAAACGAACATATT
CTTATATAACAATATGTACAAAGTGCGAAATATGAATAAATGACCCTAAA
ATACCTCATCggggaaaaaaaagttttgtgaaAGTGATCCATATTTTCAG
GGGAAGATCAAATGTACCCCAACTTTTTCATCACCCTACAAAACATTTGC
CCAATCTCATACgttttcaaattctttcaacacTCACACATAAGACAGGA
AATCCCTACAGATTctgagtattttttttttcaagtttgaactTCCAAAA
TTATCCCGACTCACCTGACCCCCCCGCCCCGATAAGGtaaaaaaaatgaa
tgctaTAAAATTGCAGGAAAATTTTTCTCGTGGTAAGAAATTCGCTTATG
ATACCACGTACTAAAAGTCTATAGAGCGCGTCACTGAAACGGTTGTTCCT
CTAGATGCTAAATGTATATTGATTGAAGCTCTCATTAGATTTTAATAATA
ATGCCAAATACCAGGAGCTAGTCCTAAAAGAATATTTGAGATCTTTTTTA
AAGGCCAGGCTACATTATGTCATGATTATGTTAAGTAATTAGATGTTTCT
TCCGCAAATGGTTCAAACTCTCTCAAGGGAGAGTGAGAGCTAGTTAACAG
TTTAGCTAAATTCATTCAAAGTTTTCTAGACGTTATCTGGTCATGGTAGC
ATCTAATTGTGTGATTTGTGGTAATGCGAGTAANAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001974XLOC_001974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003532-exon-sc0000028-1491911889:694511..695246TCONS_00003532-exon-sc0000028-1491911889:694511..695246Clytia hemisphaericaexon
TCONS_00003532-exon-sc0000028-1510915933:694511..695246TCONS_00003532-exon-sc0000028-1510915933:694511..695246Clytia hemisphaericaexon
TCONS_00003532-exon-sc0000028-1575043694:694511..695246TCONS_00003532-exon-sc0000028-1575043694:694511..695246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:694511..695246 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.0159	28.1993	37.0965	42.4855	6.77077	4.80818	14.2125	14.5	8.17476	8.69603	5.99712	8.12239	7.17073	6.11425	5.44994	5.84403	11.6434	11.9867	7.40748	8.60812	19.8672	18.0692	13.5376	11.2847	6.9695	11.8801	5.85333	5.07376	6.70181	5.23247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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