TCONS_00003531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003531
Unique NameTCONS_00003531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003531 ID=TCONS_00003531|Name=TCONS_00003531|organism=Clytia hemisphaerica|type=transcript|length=414bp
CTTTAAATTCAATGGCTGGAAGATTGGGTACTACTAAAATTACCTAATTA
AGTCATTAAGTTGACTTTTGCTGTACCAGAACTTCTACCAGAACTACCAA
ACTAATCTTTGACCTAGTCCTAGTTAAAGTATTTTTTCTTTCGGCGGGCa
gatttttgtacaaatttgtgtaaatacagaccaaattttttattacaatt
taaatttatttgttTAAATGAATTATATCATAGTGTAAATAAGGCTTTAA
TATTAGTAACATGTAATGTATATAGCATTTTAGTGTCTACCCTGAGGGAC
CAGTCAGCATAAGGTCATGACACTGTAAATAAGAGTCAACAgaaaaaaat
tccctttttgACATTCTTGTGTGAATTAGTGGTAGGTCTCTTAGTAATCG
GACATCTCTCGGAC
Run BLAST on NCBI

transcript from alignment at sc0000028:644145..644558

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003531 ID=TCONS_00003531|Name=TCONS_00003531|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at sc0000028:644145..644558 (Clytia hemisphaerica)
GTCCGAGAGATGTCCGATTACTAAGAGACCTACCACTAATTCACACAAGA
ATGTcaaaaagggaatttttttcTGTTGACTCTTATTTACAGTGTCATGA
CCTTATGCTGACTGGTCCCTCAGGGTAGACACTAAAATGCTATATACATT
ACATGTTACTAATATTAAAGCCTTATTTACACTATGATATAATTCATTTA
aacaaataaatttaaattgtaataaaaaatttggtctgtatttacacaaa
tttgtacaaaaatctGCCCGCCGAAAGAAAAAATACTTTAACTAGGACTA
GGTCAAAGATTAGTTTGGTAGTTCTGGTAGAAGTTCTGGTACAGCAAAAG
TCAACTTAATGACTTAATTAGGTAATTTTAGTAGTACCCAATCTTCCAGC
CATTGAATTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001973XLOC_001973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003531-exon-sc0000028-1491911889:644145..644558TCONS_00003531-exon-sc0000028-1491911889:644145..644558Clytia hemisphaericaexon
TCONS_00003531-exon-sc0000028-1510915933:644145..644558TCONS_00003531-exon-sc0000028-1510915933:644145..644558Clytia hemisphaericaexon
TCONS_00003531-exon-sc0000028-1575043694:644145..644558TCONS_00003531-exon-sc0000028-1575043694:644145..644558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:644145..644558 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.168763	0	0	2.33384	1.10654	9.12245	11.6648	4.08341	6.14181	3.85737	4.37982	5.98511	5.97653	6.87893	4.00745	4.41718	7.19069	1.65572	3.8502	12.7168	11.263	6.15132	3.78843	7.43237	13.2664	52.2066	39.5079	22.8582	31.5085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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