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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003508 ID=TCONS_00003508|Name=TCONS_00003508|organism=Clytia hemisphaerica|type=transcript|length=3671bpRun BLAST on NCBI protein sequence of TCONS_00003508-protein >TCONS_00003508-protein ID=TCONS_00003508-protein|Name=TCONS_00003508-protein|organism=Clytia hemisphaerica|type=polypeptide|length=630bp MYRKFCHATCLQYSLLAVLLITLVFNVMFVLDNRSRFQESQDQFAKQQARRun BLAST on NCBI transcript from alignment at sc0000028:870422..892740- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003508 ID=TCONS_00003508|Name=TCONS_00003508|organism=Clytia hemisphaerica|type=transcript|length=22319bp|location=Sequence derived from alignment at sc0000028:870422..892740- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:870422..892740- >TCONS_00003508 ID=TCONS_00003508|Name=TCONS_00003508|organism=Clytia hemisphaerica|type=CDS|length=17037bp|location=Sequence derived from alignment at sc0000028:870422..892740- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003508 vs. Swiss-Prot (Human)
Match: PMGT1 (Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens GN=POMGNT1 PE=1 SV=2) HSP 1 Score: 625.55 bits (1612), Expect = 0.000e+0 Identity = 300/635 (47.24%), Postives = 413/635 (65.04%), Query Frame = 3
Query: 90 ENMYRKFCHATCLQYSLLAVLLITLVFNVMFVLDNRSRFQESQDQFAKQQARDHPKDISPHRENNAEGFVGHKKALEPPRKIRIEAKSSKSSVYVAIDGLKVYEDSSEGDKTRGIHIVVINEFSGVIMAKRTFDTYLAKEEEAMVLFLNLITEGRIVIFTIKDEGTMNLKKVGRNALKTYGSRFAEELSWRSTWAYISRKRNMWYAEAIQKSPSFNDWXXXXXXXX-XXXXXXXSAGCDWGNDDVARRRRNFCSKYEGYGSVCSCTNPAPINLRGDPLTNNNIASLPIAVIAANRPNYLFRMLRGLLSKPGVDPSNVIVYIDGFFDEPSAIAELFKVSVVEHVPICSKNCRISQHYKRSLKETFEKYPAADYMIILEEDLDVSKDLMDYFSQLIPVLATDQSLYCISAWNDQGYEHSSNDPSMLYRVETMPGLGWVLKKSLFMNELYPKWPGSDKFWDWDMWMRMDGNRKGRECIIPDVSRTYHFGAKGLNMNSYFQDLYFTKHALNTKSGIHF-NISRVEKDSYEQHINDKIRTAEVLDHKENPCSSDRFIPDTKGRTYIFYIHQTHTGDYETWTNVARCFKLWDLDVRGFHKQMWRFWMKENQIFVVG-SSSPYIHYKPDNVKPIFLPKKKKE 1985
+ R+FC + + LL+T++ N+ +LD R E+ + +Q D + E G ++ L+ +E SS+S VYVA+DG V ED + ++ RGIH++V+N+ +G +MAKR FDTY E+EAMVLFLN++ GR++I T+KDEG+ +LK + L++ GS+ L WR TWA++ RK + E KSP+ + W PV+++ A+ A C W + ++ RRRR FCSK EGYGSVCSC +P PI DPL +N + ++P+AVIA NRPNYL+RMLR LLS GV P + V+IDG+++EP + LF + ++H PI KN R+SQHYK SL TF +P A + ++LEEDLD++ D + SQ I +L D SLYCISAWNDQGYEH++ DP++LYRVETMPGLGWVL++SL+ EL PKWP +K WDWDMWMRM R+GRECIIPDVSR+YHFG GLNMN YF + YF KH NT G+ N+ ++K++YE ++ + AEVLDH +NPC D F+PDT+G TY+ +I D+ TWT +A+C +WDLDVRG H+ +WR + K+N +VG +SPY KP +V PIFL KE
Sbjct: 32 QRALRRFCQTGAVLF-----LLVTVIVNIKLILDTRRAISEANEDPEPEQDYD---EALGRLEPPRRRGSGPRRVLD------VEVYSSRSKVYVAVDGTTVLEDEAR-EQGRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKDTAKALLRSLGSQAGPALGWRDTWAFVGRKGGPVFGEKHSKSPALSSWGDPVLLKTDVPLSSAEEAECHWADTELNRRRRRFCSKVEGYGSVCSCKDPTPIEFSPDPLPDNKVLNVPVAVIAGNRPNYLYRMLRSLLSAQGVSPQMITVFIDGYYEEPMDVVALFGLRGIQHTPISIKNARVSQHYKASLTATFNLFPEAKFAVVLEEDLDIAVDFFSFLSQSIHLLEEDDSLYCISAWNDQGYEHTAEDPALLYRVETMPGLGWVLRRSLYKEELEPKWPTPEKLWDWDMWMRMPEQRRGRECIIPDVSRSYHFGIVGLNMNGYFHEAYFKKHKFNTVPGVQLRNVDSLKKEAYEVEVHRLLSEAEVLDHSKNPC-EDSFLPDTEGHTYVAFIRMEKDDDFTTWTQLAKCLHIWDLDVRGNHRGLWRLFRKKNHFLMVGVPASPYSVKKPPSVTPIFLEPPPKE 650 The following BLAST results are available for this feature:
BLAST of TCONS_00003508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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