TCONS_00003496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003496
Unique NameTCONS_00003496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003496 ID=TCONS_00003496|Name=TCONS_00003496|organism=Clytia hemisphaerica|type=transcript|length=139bp
TGGAAATCTACTAACAACATGTAAATTGGACAACAAGCTACTaataaaaa
taaccaatcactGATTTTAAAGATTGACTCATTGACAAAAAGGCAGAACA
ATGGAGGGTTGAACGGATGTAAGCCAGGACGAAGAAGCG
Run BLAST on NCBI

transcript from alignment at sc0000028:646419..647056-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003496 ID=TCONS_00003496|Name=TCONS_00003496|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at sc0000028:646419..647056- (Clytia hemisphaerica)
TGGAAATCTACTAACAACATGTAAATTGGACAACAAGCTACTAATAAAAA
TAACCAATCACTGATTTTAAAGGTAAGGCTTATTTATCAAGACTGACATT
TTTTGCAAATTTATATTCTAATTACCGCCGCCAAATTCTGAAAATTAGTG
GTCTTATAAAAGCCTATTATCTTGGTTGTCTCGAATACAATGACTGGTTA
CTGAGGGCTGTACTGAGAAATATTGCCCGAGGTCAAGTAAAGACCGAGCT
TGCAAGGTTGTTGCGTTGATCGAGGGCAATATCTCACAGTTCATGTCGCA
CGACATGAGCGAAAACTTTTTGACGTTTTTGTAAGTGCATCGGTCGATTG
AAAAATGAAGCAATTCCATTGGTCGAAATTGGTGTAACGGATGAAAAAAG
TAGAACTTCTTTCAACCTTTTTTTGTTCGCGCGAAACTTTTTTATGACGT
AATCTTTTCTTCAGGTAAAATAGGCTAAGAAAAAAGCTGTCACCCATTTC
GCGCGAAAGTGGAGACCGGCCTTAAGGAAATTTTATCCTAATAATTGATA
TATTATGTTATTTTCTAACAGATTGACTCATTGACAAAAAGGCAGAACAA
TGGAGGGTTGAACGGATGTAAGCCAGGACGAAGAAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001943XLOC_001943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003496-exon-sc0000028-1575043694:646985..647056TCONS_00003496-exon-sc0000028-1575043694:646985..647056Clytia hemisphaericaexon
TCONS_00003496-exon-sc0000028-1575043694:646419..646485TCONS_00003496-exon-sc0000028-1575043694:646419..646485Clytia hemisphaericaexon
TCONS_00003496-exon-sc0000028-1510915933:646985..647056TCONS_00003496-exon-sc0000028-1510915933:646985..647056Clytia hemisphaericaexon
TCONS_00003496-exon-sc0000028-1510915933:646419..646485TCONS_00003496-exon-sc0000028-1510915933:646419..646485Clytia hemisphaericaexon
TCONS_00003496-exon-sc0000028-1491911889:646985..647056TCONS_00003496-exon-sc0000028-1491911889:646985..647056Clytia hemisphaericaexon
TCONS_00003496-exon-sc0000028-1491911889:646419..646485TCONS_00003496-exon-sc0000028-1491911889:646419..646485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:646419..647056 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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