TCONS_00003469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003469
Unique NameTCONS_00003469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003469 ID=TCONS_00003469|Name=TCONS_00003469|organism=Clytia hemisphaerica|type=transcript|length=2768bp
NCTGAAGAAAAGTCATGTCTTGAAGAGTATTCAAATAATTGAATCAACCT
TTACATCTTCTTTTAGTTGTCCTAAACATGATACGAAGTTTATCAAGGCG
ACTTAGGCGAACACTCAGCTTCAGAGGGCGAAGCAAAAGGAAGAAGGACA
AAACTGGAGGTACTGTCTCTGGTGGGGCCAGTTCGAATTGGGAAAATGAT
GCCCTGACTATTAAACAACAAGGAGGTGTCAGTTTTACTGTGAAATATTT
AGGATGTCTGGAGGTTTCAGAGTCAAGGGGAACCCAAGTTTGTTCACAGG
CTGCTCATCAAATGAAAATGAGTTCAGCTGGTAAGAAAAAACAACGAGTC
ACACTTTGGGTAACAGAAGACACATTGAGAGTTACAGATGATGAAACTAA
GTCACTTGTGGTTGACCAGGTCAtagaaaaagtttcattttgtaCTCCTG
ATCCACACGATGAAAAATTGTTCTCTTACATCTGTCGAGATGGGACTTCA
AGAAGATGGCTTTGTCATTCCTTCAAAGGCATAAAGGATTCAGGTGAAAG
AATAAGTCACGCTGTTGGTTGTGCTTTTGCTGCCTGTCTCgccaaaaaac
aacaacaaaatcagAACCAGCAAAACCTTCAGAGAGGAACTTCAACAAGA
AAAACGCTTGAAAGTCGTCCAAATGGTGTAAAACTTCCACAACAAAGTGT
AGACACATtacaaaaattgaatgaaacaGAATATACTGCTAGAATAGAAA
AAGCTAACCACACGCTTAACAATACATCAACATCAGGTGCTATGAATGGC
CCAGCTGATATTAGTGTAGCTGCAACTCCAGCACCAACCACACCACAATC
AAAACAACCACCAGCGAGTGCATTTGCTCCAAGACCACGCCCGAGTGGAT
CTGGCTCAGATATTGGTGGACTAACAAGACACGCCTCTTTACCATATCGT
GCTAAAAAATCTGCAGGGTCATCTACCTACCAAGCTCTGACAGAAGATCC
ATTACCCCCTCGGCTACCAACTACTCCCCCACCCATGACACCAAATTCTG
AACAAGAATTCTGGTTAAATAACACTACACCTGGATTTACAGCCACCACA
AATACAACTGTGACTGTTCAAACGCAAGCCAACCCTTTCAGTCAACAGCC
AGTAATGTCTACACCGCAGCAACCTTTTGTTATTCAACAACAGGCTGGAG
TCACTCCCATTCAACCAGTTCCAGCCGCGGAACAACAAAGTCCTAATCCA
TTTGTTAACAATGCTAATCCTTTCACTGAAAGATTTGTATGAAAAACTTG
GCTACTATGGCACACATAAGTGTAAAACAAAAGGGATAACAATGCTAACA
TATATAATAATATGTATACTCATACCTGGTGCTGAATCGAGGTGGAATTC
ACTCAGACGCAAAAAGTAGTGCTTTCAGAGGAAATACTTTTCAAACTAAT
AAATTAGAATAAGGAATGTCTAGAGTTGGATTATTATGAAGGGAACATTG
AAAATGGCACCTATTTTAATCTTTatgttggaaaaattcttttaaatgaa
AGTTCCATCAGCAATCCGTGTTCTTTCTTGTATGGAGCATgatatcttta
ttttgtattttgttttaaatggaaaatttttacACGCTTGTTTTATGTAT
AGATTTTGTGTTATTTTAGAGAAGCTAGTATAGAGTTTGCTCAAGGCCTT
CTCTTACAATCAAGACGATAAATTTAGATTGTACTTTTTAAGTCTTTTAG
TATTATCAtttttttgttttgttttttataatgataaaatcacaattttg
tttattttaacgTATCGTATATTAAATGCTTTTAATGACGATCGCGATAA
TTGTTTTTAAATGTGTTTACATGGATACATTTTTtgtataataatatttt
gagTTAATTGAGATAACCAGACCAAACTAACCTTCTTTTTCAATGAAATA
ATAGGGTTATCTTTTGGGATACttgtcttttttttattgagCTTCTTGGt
tttcagaacttttttttatctatcATTTCAGCTAATTCTCCTTTTTACGT
ACAGTAATTtatagataattttttttggtttcccTTTTTTTTAACTGACT
AACTTTATAATGTTATGTTGACAATacaattgtttttcaaaataatgtgt
tttagttttttaaagGAATTTAAAAGGAGTTTTCGTTTTGACGGTGTTGG
GTGAATGTTTTGGGTGTTATCGATAACAAGACTggttttgttattaattt
tttccaTCTATTCAACAGAANGTGTTATCGATAACAAGAATggttttgtt
attaattttttccaTCTATTCAAcagaaattgttttctttttttcaattc
gaTCTCATCGTGTCAAGATTCGGAAGTTCTTTTTGTTTCAACTTTATCAT
CTATgtgaatcttcttttttttcttaagcTTTGTCATTTTAATACACTCT
TCACTCAAacgaaaaaaatacattttgtgACCACGTAGTCTTACTTTGAC
ATATAATAAGATAATCAAAATGACCACTAATTACACGAATCATGaattta
tattttgttcttCCATTTATGcttttaattattatttttaactGAAATTG
TAATGATCTAATTATGTACAATATTTATAGTTTTCTCATAAACAATCTCT
GtcattattgtttttttatggACAAGGTCTACccaaatgtttgtttttaa
CCGTTGGTTTGATACTGCATAAAGCGTATTTCGAAAGTCTATTGTGGGCA
TAAAGTGATTTGTACTCG
Run BLAST on NCBI

protein sequence of TCONS_00003469-protein

>TCONS_00003469-protein ID=TCONS_00003469-protein|Name=TCONS_00003469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MIRSLSRRLRRTLSFRGRSKRKKDKTGGTVSGGASSNWENDALTIKQQGG
VSFTVKYLGCLEVSESRGTQVCSQAAHQMKMSSAGKKKQRVTLWVTEDTL
RVTDDETKSLVVDQVIEKVSFCTPDPHDEKLFSYICRDGTSRRWLCHSFK
GIKDSGERISHAVGCAFAACLAKKQQQNQNQQNLQRGTSTRKTLESRPNG
VKLPQQSVDTLQKLNETEYTARIEKANHTLNNTSTSGAMNGPADISVAAT
PAPTTPQSKQPPASAFAPRPRPSGSGSDIGGLTRHASLPYRAKKSAGSST
YQALTEDPLPPRLPTTPPPMTPNSEQEFWLNNTTPGFTATTNTTVTVQTQ
ANPFSQQPVMSTPQQPFVIQQQAGVTPIQPVPAAEQQSPNPFVNNANPFT
ERFV
Run BLAST on NCBI

transcript from alignment at sc0000028:55673..63814-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003469 ID=TCONS_00003469|Name=TCONS_00003469|organism=Clytia hemisphaerica|type=transcript|length=8142bp|location=Sequence derived from alignment at sc0000028:55673..63814- (Clytia hemisphaerica)
NCTGAAGAAAAGTCATGTCTTGAAGAGTATTCAAATAATTGAATCAACCT
TTACATCTTCTTTTAGTTGTCCTAAACATGATACGAAGTTTATCAAGGCG
ACTTAGGCGAACACTCAGCTTCAGAGGGCGAAGCAAAAGGAAGAAGGACA
AAACTGGAGGTACTGTCTCTGGTGGGGCCAGTTCGAATTGGGAAAATGAT
GCCCTGACTATTAAACAACAAGGAGGTGTCAGTTTTACTGTGAAAGTAAG
TTTTTTTCTAATCTTTTTGGTACAGAAATTTTAGATCAGTACAATTGGTA
CACCCAACCAGTCAAACTCAAACAACAACAGACTTGCTCCCGACCCGAGT
GGTTGAGATGGAAAGAAAAATCAAGATTAAGAAACATTGACAGCTACTAA
AGTTGAGAACTGTTTCAGTTGATATTATAAGATTGATGGGTACCGTGAAG
TCGGGTAACTTGTATCAGTGGAGGCAAACATGCATATCCATCATGAATGA
CCTTCGCTGTCTCTGGTCAGTCATTAAAATACAAAGTTAGATAAAAATAA
AAATGGTAGAGTAGTGACATGTTATGACAGAAGGTTGATAAACTTGGTGG
AAGTATCAAAACAAATTTGTTGTCAAAGAGATTTTTAACAGTAAGGCTGG
ACTTGTTGGTTTGTTGGTCACCGACCGACCCTACCTCGAAAACTGCTGAC
CCGAACAATTTCATTGCCATTTTAAAGAAGATTTTTCCTTCAAAAACTTC
AAACAATAAAAAATCAAAACTTGTATCTTGTTTGTCTCAAGCATAAGAAT
CATAAATTCCCTGCTAGCTCTTCTGCTTTTTATTCAAAATTACCTAAATG
TAAACTAACTATTAACCCTTCCATAGTGTCCTCCCCCTCCTTTATGAAGG
GGGGGGGAAACCAATTTTCCAATTTTGAATGGGTGAGGGGGGAAATGAAA
ATTTGAATAGTAAAGGGGGGGGGGGAAAGAGGGGGAAAACATCGATAGTT
GGCAAATTTGGTGGGGGGAAGTACGAAATCACTTCAACTTTATCTCAGCA
ACCAAGGTCAGTCCACATGATATCATGTGATTAGATCATGATTGAAAAAT
TAACCAATTTTCGTTCTATTTTGTCTAGTATTCCTTTTGCAGCAAAATTT
TATGTTTGTGTCAGGTTGAAATTTGAGAAATTTATGCGGGTATATGGGGG
CAACTGATATTTTCAGAATTTTCTGGGGGGAAAGCAAAAAAGAGGTGGGA
AACTAAAAAACCGAAAAGTCATTGGGGGAAAAAAAAGAGGGGAGAGAGTT
TAAAAAATCAAGAATTTGGTGGGGGGAACAAACCCTGGAGGACACTATGC
CTTCCATGGACGAAAATTTCATAAATCGCCAAAATAAAAAAAAATTCCAA
ACGACCGACCCACCTCCAACATCTAGGGTCGGGTGCCGGCAAACCAACAA
TTTTTTAAGCCCAGCTTAAGTGAAAATACAGGCCAGATATCAACAGACCC
ATGTTTCGACAAATCATCCCAAGTTAGAGCAGTTGACGGTAGGTGTATAA
GTATAGCAAAAAAAGAAATGGGTGTATAGCAAAGAAATAAGTGTATAGCA
AGAAAAGAAATGGGTGTATCCAGACACCAGTGTCATCTATCGAACAACTT
CGAACAAAAATCGCAGAACCAAGAGAACGTAATTGAACGCGATCGAATAA
TTGCAATTCAATTGTTGAATGTAATCGAATCTCAATCAAACTGCGGATTC
CTTGGTAATATTCAATTGTGTTCGAGTAATGTTACATTGGTTCGATTGAT
AGTTGACTATGTTTAATTGGTTCAATTGATTGTTAATTCCATTTGATTGA
TCTTCGATTTTGTTCGATTACGATTATGTTCGATGAGTAAAAGATAGAGA
TCAGACTACTCAAAAACTGAGCTTTAATGTCGGGAGTTTGTGCTGGGAGG
TAAAAGCATAAGCTAAAGTTCAAGCTGCTAGAAAGAAGTGTTGTTGAAGG
AGAAAGCAGGCTACATTATTTGAGGCGTGTGATAACACACGTACACACCT
CCACACCCTAAAATGTCTGAGGAGTGTGATCAATCACACCCCCCCCCATT
AGTTCCAAAACTAAAAGTTCTGTATAGCACCTCTTATATCACATGCCTGA
ATTACTGAAATTAAGGTTTTAGGAGTATGATTGACTACTAGCCTGAAATT
TTCTAATGACGCACCCTGAGAAAGAAGTGAGAAACTGGCTGAAAAAAAAA
TTATTCCAATATTTACTTTCTTATTGATATAGAGTTTGACACCACCCCTA
ACACCCCCTTATTCTGTCAAATTCCAATAGAAAACTTGAAATTTCTCTGA
ACAAAAGATATGGATGTAGTCTGTGGTTTATTTTGACTGAGATTATTATA
TTTGCTATAGTTCCAATAAAGTTACTTAGTACAGTTTAGTTATTACCTTC
TAACTAACTTTATTATATTCTTGATGAAGTCAAGAAGTGCTTTGTACTAC
TTTGTACAATCAATTTTTCACGATTTTGGGAATGAAAAAATTAGTTGTTG
TTCTGAACACTATTGATTCCAACTTCATGCCATCTTCATTTTGAAAAGCT
GTTTAATAATTATACATTTCACTGAAACAAACCATAGTGCAAACCATCAC
AACATAATAGATCCAAATCGGTACGCAACCCCTTTTATAAATCTAAATTG
GGTATTATTAATTGAAATATGAATGAAAAGGTAACAAACAATCATAGAAA
CAAAATTTACATTGTAGTTTTTTATTTTATTTCATTTAATTAGTATTTAG
GATGTCTGGAGGTTTCAGAGTCAAGGGGAACCCAAGTTTGTTCACAGGCT
GCTCATCAAATGAAAATGGTAGGTATTTTGTTCAATATTTAAATATAATA
AAAGTTTATTCACTTTCATATACTAAAAAGGTTAACAGAACCTGACAGAA
CCTGTGATTTTCAATGTAATTTTTTTATGTATAATTTTCTATATTCATCT
ATCAGCATCTATAACATTCTGAAAAGTATAACAAAATTTTCATAGATCAA
CGATCAAACTTCAAGTCATACTATATAAAAAAAAGCTTTTTGCTCTTATA
GAGTTCAGCTGGTAAGAAAAAACAACGAGTCACACTTTGGGTAACAGAAG
ACACATTGAGAGTTACAGATGATGAAACTAAGGTAGGGATTTTCACATCA
ATGAAAGTACATCTTGCGTAACTTATGGCTTTCAGAACTTTCATCAATTA
TGACGTCATAAAGCACTTTCTTCCTAATTTTTCAAAATAGACAACAAATT
TTATTAACAGGCAGTTCTGAAATCTACATCCTAATTAATATGCATAGCTT
CAGCCAGGTTTCTAGCTCCCCCCAACAAAGTAAGGTCCCCCCAACAATTT
AGCTCCCCCCAAAAAATTGCCTTGTCCCCGTAGAGGGAAGTCAATAAAAA
ATATATGCGAGTACAGTACTGATAAATGAAAACTAAATTTTACTTGTATT
AATATTTATGTTTACAAATCTTTTGCTTTTTATATTTGATTTANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCC
CCAAAAAAAAAGTAAGAGGGGAGCTGAAGCTATGATATGCTTAGTTTGAC
GTATAAATGACCATGCCTAAGACCCCCAATTTTCGGTGCCAAACTTATAT
TGTGTTTTTGAATACTTTGGTTTTCAGTCACTTGTGGTTGACCAGGTCAT
AGAAAAAGTTTCATTTTGTACTCCTGATCCACACGATGAAAAATTGTTCT
CTTACATCTGTCGAGATGGGACTTCAAGAAGATGGCTTTGTCATTCCTTC
AAAGGCATAAAGGATTCAGTAAGTCTTGATTTCAGAATGAGTTCAATTGT
CTTTCGATTATCGGAATCATTCAATATCCAAACCAATCAATCGATTATCG
GAATCAATTAGTATTCAATCAGTCGATTGATTATCAATGAGTCATCGATT
AAAAAAAGTTGCAATTGTATCGAGTGGGGGAGTCTGGTCTAGAAGTATCA
AAATTCACACCTAAATTAATTGACCTTCTAGGCACATGCTCAAATGATTT
GAAGTTTTGTTCTTCTGAGTTTAACATCTATATATTAATAGTGGTAGTCT
GTATGTCGTTTTGTCGTCTTTCTTTCTTTCTGTCTGTGCTACTTTCGTTT
TCGCACGCAATGTTTTTGTTCTTCCAAAAGATGACTTTTATTTTGTTCTT
GCTCCACAAATGTGTTAAATCAGATTCGCGCCGTTTATAAAGACTTTGTT
TTGATTGATAGATTAGACTTTTTCTTTTTTTTTCTTTCTTTTCTTTTGTT
TTATGTTTTCGAATGTAATTAACGACCTTATTTCATTTGAGACCTTCGAA
TTCTTTTCAAAACAAAAGAAATCTTTTAAACAGAATCTGTTAAAGAAAAG
AACAAATATAAAATAAAACACAAGAATCACATAACAAGTTTGTTAGAACA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCGTAAAAAGGGACCTTTAA
ACATGTATGTCGATAATTATTTTGCTGTAAATCTAAGTCATTGTTGAATT
TGAAAAATTATTGAAGTTATGACGAAGTTATTTCATAAAAAAGCAACATA
AAATTGAGCTATCTATCACGCTTTTTTGTCTGCGTGTCCTAGCTGCCTTC
CGGGGGGAGTATGGTTGCGAGCTGACTTTCGGCCCTGCCCCTCGGACCCT
TAGCAGAATAAAGAGGAGAAGAAACAAGGGAAATTGTGTGAATTTTAATT
CACTTTTTGGAACTAATTTGACCAAATTTCTATCTTACTAAGGGCAAAAA
GTTGAAATTTTCCTATTTTTCCAATTCTTAGTGGGACTGAAGTTTGATTT
TCCGATTTTTCAAACTGTCATGTTTCAAAAAAGGCACCTTTAAGGCTGGC
ACATACCCATACCCATACCCTTCTCTTGCCTAAGTATCCCCTCCCCCGGG
CTGCCTTTTTTTCGAAGAATCGCGTGTCATGTCTATTATTTCACTCCGCT
TATCTTGACATCAAAGTTTTCCTAAACATCAAGAACTACGGCAAATATAA
CGCAAGCGAAGCGAGAAAAAAAATCTAATTGCAGAGCCGTCTCGGACGTT
GCTGGTCGCCGGTATGGTGTAATTTGGGAATGATGCCCTTTCTGTTTTCT
GATCATTTTTGCAACAAAAATCTTTTTCAAAGTTTGGTTAAAAGATATGT
CACCCGGGAGGGATAGAGTCGAACTTTGAAGAGAATTCTTCCCTTTATAA
TTTTGATTCCATCGTGTTTAAGTCACCTTCCCAACATCTCAAAGGACTTT
AAATGCGTTCAGCAAACAGCTAAACCGGCGTGCGACGCCGGGTACCGGCT
AGTCCTTTTTAATAAGTTAAGTTTTATAAGTTAATCTTTTTATATAGTAA
GTTACGCCAATGTTTCAAAAAAAAATGTATGCTTAACATCTGTTTTTCAT
TTCCTGTTTAGGGTGAAAGAATAAGTCACGCTGTTGGTTGTGCTTTTGCT
GCCTGTCTCGCCAAAAAACAACAACAAAATCAGAACCAGCAAAACCTTCA
GGTGATTGTTGATATATAGTTTGTTTTCTTTTGTGTAACCTTATTTCAAT
TCAATTAAATTACAGTGTTCCTAAATTTAAAAATATTTTATGTTTGAAGT
ATTGGATACTTTTTTCTGAAGAAATAATGAATTTTTAGTCTATTTGTCTG
CCTTTTTAAATTTTAAAATGTGTTAAATAAAATGAGCATTATTTTACTTA
TAGAGAGGAACTTCAACAAGAAAAACGCTTGAAAGTCGTCCAAATGGTGT
AAAACTTCCACAACAAAGTGTAGACACATTACAAAAATTGAATGAAACAG
AATATACTGCTAGAATAGAAAAAGCTAACCACACGCTTAACAATACATCA
ACATCAGGTGCTATGAATGGCCCAGCTGATATTAGTGTAGCTGCAACTCC
AGCACCAACCACACCACAATCAAAACAACCACCAGCGAGTGCATTTGCTC
CAAGACCACGCCCGAGTGGATCTGGCTCAGATATTGGTGGACTAACAAGA
CACGCCTCTTTACCATATCGTGCTAAAAAATCTGCAGGGTCATCTACCTA
CCAAGCTCTGACAGAAGATCCATTACCCCCTCGGCTACCAACTACTCCCC
CACCCATGACACCAAATTCTGAACAAGAATTCTGGTTAAATAACACTACA
CCTGGATTTACAGCCACCACAAATACAACTGTGACTGTTCAAACGCAAGC
CAACCCTTTCAGTCAACAGCCAGTAATGTCTACACCGCAGCAACCTTTTG
TTATTCAACAACAGGCTGGAGTCACTCCCATTCAACCAGTTCCAGCCGCG
GAACAACAAAGTCCTAATCCATTTGTTAACAATGCTAATCCTTTCACTGA
AAGATTTGTATGAAAAACTTGGCTACTATGGCACACATAAGTGTAAAACA
AAAGGGATAACAATGCTAACATATATAATAATATGTATACTCATACCTGG
TGCTGAATCGAGGTGGAATTCACTCAGACGCAAAAAGTAGTGCTTTCAGA
GGAAATACTTTTCAAACTAATAAATTAGAATAAGGAATGTCTAGAGTTGG
ATTATTATGAAGGGAACATTGAAAATGGCACCTATTTTAATCTTTATGTT
GGAAAAATTCTTTTAAATGAAAGTTCCATCAGCAATCCGTGTTCTTTCTT
GTATGGAGCATGATATCTTTATTTTGTATTTTGTTTTAAATGGAAAATTT
TTACACGCTTGTTTTATGTATAGATTTTGTGTTATTTTAGAGAAGCTAGT
ATAGAGTTTGCTCAAGGCCTTCTCTTACAATCAAGACGATAAATTTAGAT
TGTACTTTTTAAGTCTTTTAGTATTATCAGTNGCAAGTCGATAAATTTAG
ATTGTACTTTTTAAGTCTTTTAGTATTATCAGTTTTTTTGTTTTGTTTTT
TATAATGATAAAATCACAATTTTGTTTATTTTAACGTATCGTATATTAAA
TGCTTTTAATGACGATCGCGATAATTGTTTTTAAATGTGTTTACATGGAT
ACATTTTTTGTATAATAATATTTTGAGTTAATTGAGATAACCAGACCAAA
CTAACCTTCTTTTTCAATGAAATAATAGGGTTATCTTTTGGGATACTTGT
CTTTTTTTTATTGAGCTTCTTGGTTTTCAGAACTTTTTTTTATCTATCAT
TTCAGCTAATTCTCCTTTTTACGTACAGTAATTTATAGATAATTTTTTTT
GGTTTCCCTTTTTTTTAACTGACTAACTTTATAATGTTATGTTGACAATA
CAATTGTTTTTCAAAATAATGTGTTTTAGTTTTTTAAAGGAATTTAAAAG
GAGTTTTCGTTTTGACGGTGTTGGGTGAATGTTTTGGGTGTTATCGATAA
CAAGACTGGTTTTGTTATTAATTTTTTCCATCTATTCAACAGAANGTGTT
ATCGATAACAAGAATGGTTTTGTTATTAATTTTTTCCATCTATTCAACAG
AAATTGTTTTCTTTTTTTCAATTCGATCTCATCGTGTCAAGATTCGGAAG
TTCTTTTTGTTTCAACTTTATCATCTATGTGAATCTTCTTTTTTTTCTTA
AGCTTTGTCATTTTAATACACTCTTCACTCAAACGAAAAAAATACATTTT
GTGACCACGTAGTCTTACTTTGACATATAATAAGATAATCAAAATGACCA
CTAATTACACGAATCATGAATTTATATTTTGTTCTTCCATTTATGCTTTT
AATTATTATTTTTAACTGAAATTGTAATGATCTAATTATGTACAATATTT
ATAGTTTTCTCATAAACAATCTCTGTCATTATTGTTTTTTTATGGACAAG
GTCTACCCAAATGTTTGTTTTTAACCGTTGGTTTGATACTGCATAAAGCG
TATTTCGAAAGTCTATTGTGGGCATAAAGTGATTTGTACTCG

Coding sequence (CDS) from alignment at sc0000028:55673..63814-

>TCONS_00003469 ID=TCONS_00003469|Name=TCONS_00003469|organism=Clytia hemisphaerica|type=CDS|length=7290bp|location=Sequence derived from alignment at sc0000028:55673..63814- (Clytia hemisphaerica)
AGAGGAACTTCAACAAGAAAAACGCTTGAAAGTCGTCCAAATGGTGTAAA
ACTTCCACAACAAAGTGTAGACACATTACAAAAATTGAATGAAACAGAAT
ATACTGCTAGAATAGAAAAAGCTAACCACACGCTTAACAATACATCAACA
TCAGGTGCTATGAATGGCCCAGCTGATATTAGTGTAGCTGCAACTCCAGC
ACCAACCACACCACAATCAAAACAACCACCAGCGAGTGCATTTGCTCCAA
GACCACGCCCGAGTGGATCTGGCTCAGATATTGGTGGACTAACAAGACAC
GCCTCTTTACCATATCGTGCTAAAAAATCTGCAGGGTCATCTACCTACCA
AGCTCTGACAGAAGATCCATTACCCCCTCGGCTACCAACTACTCCCCCAC
CCATGACACCAAATTCTGAACAAGAATTCTGGTTAAATAACACTACACCT
GGATTTACAGCCACCACAAATACAACTGTGACTGTTCAAACGCAAGCCAA
CCCTTTCAGTCAACAGCCAGTAATGTCTACACCGCAGCAACCTTTTGTTA
TTCAACAACAGGCTGGAGTCACTCCCATTCAACCAGTTCCAGCCGCGGAA
CAACAAAGTCCTAATCCATTTGTTAACAATGCTAATCCTTTCACTGAAAG
ATTTGTATGAGGTGAAAGAATAAGTCACGCTGTTGGTTGTGCTTTTGCTG
CCTGTCTCGCCAAAAAACAACAACAAAATCAGAACCAGCAAAACCTTCAG
TCACTTGTGGTTGACCAGGTCATAGAAAAAGTTTCATTTTGTACTCCTGA
TCCACACGATGAAAAATTGTTCTCTTACATCTGTCGAGATGGGACTTCAA
GAAGATGGCTTTGTCATTCCTTCAAAGGCATAAAGGATTCAAGTTCAGCT
GGTAAGAAAAAACAACGAGTCACACTTTGGGTAACAGAAGACACATTGAG
AGTTACAGATGATGAAACTAAGTATTTAGGATGTCTGGAGGTTTCAGAGT
CAAGGGGAACCCAAGTTTGTTCACAGGCTGCTCATCAAATGAAAATGATG
ATACGAAGTTTATCAAGGCGACTTAGGCGAACACTCAGCTTCAGAGGGCG
AAGCAAAAGGAAGAAGGACAAAACTGGAGGTACTGTCTCTGGTGGGGCCA
GTTCGAATTGGGAAAATGATGCCCTGACTATTAAACAACAAGGAGGTGTC
AGTTTTACTGTGAAAAGAGGAACTTCAACAAGAAAAACGCTTGAAAGTCG
TCCAAATGGTGTAAAACTTCCACAACAAAGTGTAGACACATTACAAAAAT
TGAATGAAACAGAATATACTGCTAGAATAGAAAAAGCTAACCACACGCTT
AACAATACATCAACATCAGGTGCTATGAATGGCCCAGCTGATATTAGTGT
AGCTGCAACTCCAGCACCAACCACACCACAATCAAAACAACCACCAGCGA
GTGCATTTGCTCCAAGACCACGCCCGAGTGGATCTGGCTCAGATATTGGT
GGACTAACAAGACACGCCTCTTTACCATATCGTGCTAAAAAATCTGCAGG
GTCATCTACCTACCAAGCTCTGACAGAAGATCCATTACCCCCTCGGCTAC
CAACTACTCCCCCACCCATGACACCAAATTCTGAACAAGAATTCTGGTTA
AATAACACTACACCTGGATTTACAGCCACCACAAATACAACTGTGACTGT
TCAAACGCAAGCCAACCCTTTCAGTCAACAGCCAGTAATGTCTACACCGC
AGCAACCTTTTGTTATTCAACAACAGGCTGGAGTCACTCCCATTCAACCA
GTTCCAGCCGCGGAACAACAAAGTCCTAATCCATTTGTTAACAATGCTAA
TCCTTTCACTGAAAGATTTGTATGAGGTGAAAGAATAAGTCACGCTGTTG
GTTGTGCTTTTGCTGCCTGTCTCGCCAAAAAACAACAACAAAATCAGAAC
CAGCAAAACCTTCAGTCACTTGTGGTTGACCAGGTCATAGAAAAAGTTTC
ATTTTGTACTCCTGATCCACACGATGAAAAATTGTTCTCTTACATCTGTC
GAGATGGGACTTCAAGAAGATGGCTTTGTCATTCCTTCAAAGGCATAAAG
GATTCAAGTTCAGCTGGTAAGAAAAAACAACGAGTCACACTTTGGGTAAC
AGAAGACACATTGAGAGTTACAGATGATGAAACTAAGTATTTAGGATGTC
TGGAGGTTTCAGAGTCAAGGGGAACCCAAGTTTGTTCACAGGCTGCTCAT
CAAATGAAAATGATGATACGAAGTTTATCAAGGCGACTTAGGCGAACACT
CAGCTTCAGAGGGCGAAGCAAAAGGAAGAAGGACAAAACTGGAGGTACTG
TCTCTGGTGGGGCCAGTTCGAATTGGGAAAATGATGCCCTGACTATTAAA
CAACAAGGAGGTGTCAGTTTTACTGTGAAAAGAGGAACTTCAACAAGAAA
AACGCTTGAAAGTCGTCCAAATGGTGTAAAACTTCCACAACAAAGTGTAG
ACACATTACAAAAATTGAATGAAACAGAATATACTGCTAGAATAGAAAAA
GCTAACCACACGCTTAACAATACATCAACATCAGGTGCTATGAATGGCCC
AGCTGATATTAGTGTAGCTGCAACTCCAGCACCAACCACACCACAATCAA
AACAACCACCAGCGAGTGCATTTGCTCCAAGACCACGCCCGAGTGGATCT
GGCTCAGATATTGGTGGACTAACAAGACACGCCTCTTTACCATATCGTGC
TAAAAAATCTGCAGGGTCATCTACCTACCAAGCTCTGACAGAAGATCCAT
TACCCCCTCGGCTACCAACTACTCCCCCACCCATGACACCAAATTCTGAA
CAAGAATTCTGGTTAAATAACACTACACCTGGATTTACAGCCACCACAAA
TACAACTGTGACTGTTCAAACGCAAGCCAACCCTTTCAGTCAACAGCCAG
TAATGTCTACACCGCAGCAACCTTTTGTTATTCAACAACAGGCTGGAGTC
ACTCCCATTCAACCAGTTCCAGCCGCGGAACAACAAAGTCCTAATCCATT
TGTTAACAATGCTAATCCTTTCACTGAAAGATTTGTATGAGGTGAAAGAA
TAAGTCACGCTGTTGGTTGTGCTTTTGCTGCCTGTCTCGCCAAAAAACAA
CAACAAAATCAGAACCAGCAAAACCTTCAGTCACTTGTGGTTGACCAGGT
CATAGAAAAAGTTTCATTTTGTACTCCTGATCCACACGATGAAAAATTGT
TCTCTTACATCTGTCGAGATGGGACTTCAAGAAGATGGCTTTGTCATTCC
TTCAAAGGCATAAAGGATTCAAGTTCAGCTGGTAAGAAAAAACAACGAGT
CACACTTTGGGTAACAGAAGACACATTGAGAGTTACAGATGATGAAACTA
AGTATTTAGGATGTCTGGAGGTTTCAGAGTCAAGGGGAACCCAAGTTTGT
TCACAGGCTGCTCATCAAATGAAAATGATGATACGAAGTTTATCAAGGCG
ACTTAGGCGAACACTCAGCTTCAGAGGGCGAAGCAAAAGGAAGAAGGACA
AAACTGGAGGTACTGTCTCTGGTGGGGCCAGTTCGAATTGGGAAAATGAT
GCCCTGACTATTAAACAACAAGGAGGTGTCAGTTTTACTGTGAAAAGAGG
AACTTCAACAAGAAAAACGCTTGAAAGTCGTCCAAATGGTGTAAAACTTC
CACAACAAAGTGTAGACACATTACAAAAATTGAATGAAACAGAATATACT
GCTAGAATAGAAAAAGCTAACCACACGCTTAACAATACATCAACATCAGG
TGCTATGAATGGCCCAGCTGATATTAGTGTAGCTGCAACTCCAGCACCAA
CCACACCACAATCAAAACAACCACCAGCGAGTGCATTTGCTCCAAGACCA
CGCCCGAGTGGATCTGGCTCAGATATTGGTGGACTAACAAGACACGCCTC
TTTACCATATCGTGCTAAAAAATCTGCAGGGTCATCTACCTACCAAGCTC
TGACAGAAGATCCATTACCCCCTCGGCTACCAACTACTCCCCCACCCATG
ACACCAAATTCTGAACAAGAATTCTGGTTAAATAACACTACACCTGGATT
TACAGCCACCACAAATACAACTGTGACTGTTCAAACGCAAGCCAACCCTT
TCAGTCAACAGCCAGTAATGTCTACACCGCAGCAACCTTTTGTTATTCAA
CAACAGGCTGGAGTCACTCCCATTCAACCAGTTCCAGCCGCGGAACAACA
AAGTCCTAATCCATTTGTTAACAATGCTAATCCTTTCACTGAAAGATTTG
TATGAGGTGAAAGAATAAGTCACGCTGTTGGTTGTGCTTTTGCTGCCTGT
CTCGCCAAAAAACAACAACAAAATCAGAACCAGCAAAACCTTCAGTCACT
TGTGGTTGACCAGGTCATAGAAAAAGTTTCATTTTGTACTCCTGATCCAC
ACGATGAAAAATTGTTCTCTTACATCTGTCGAGATGGGACTTCAAGAAGA
TGGCTTTGTCATTCCTTCAAAGGCATAAAGGATTCAAGTTCAGCTGGTAA
GAAAAAACAACGAGTCACACTTTGGGTAACAGAAGACACATTGAGAGTTA
CAGATGATGAAACTAAGTATTTAGGATGTCTGGAGGTTTCAGAGTCAAGG
GGAACCCAAGTTTGTTCACAGGCTGCTCATCAAATGAAAATGATGATACG
AAGTTTATCAAGGCGACTTAGGCGAACACTCAGCTTCAGAGGGCGAAGCA
AAAGGAAGAAGGACAAAACTGGAGGTACTGTCTCTGGTGGGGCCAGTTCG
AATTGGGAAAATGATGCCCTGACTATTAAACAACAAGGAGGTGTCAGTTT
TACTGTGAAAAGAGGAACTTCAACAAGAAAAACGCTTGAAAGTCGTCCAA
ATGGTGTAAAACTTCCACAACAAAGTGTAGACACATTACAAAAATTGAAT
GAAACAGAATATACTGCTAGAATAGAAAAAGCTAACCACACGCTTAACAA
TACATCAACATCAGGTGCTATGAATGGCCCAGCTGATATTAGTGTAGCTG
CAACTCCAGCACCAACCACACCACAATCAAAACAACCACCAGCGAGTGCA
TTTGCTCCAAGACCACGCCCGAGTGGATCTGGCTCAGATATTGGTGGACT
AACAAGACACGCCTCTTTACCATATCGTGCTAAAAAATCTGCAGGGTCAT
CTACCTACCAAGCTCTGACAGAAGATCCATTACCCCCTCGGCTACCAACT
ACTCCCCCACCCATGACACCAAATTCTGAACAAGAATTCTGGTTAAATAA
CACTACACCTGGATTTACAGCCACCACAAATACAACTGTGACTGTTCAAA
CGCAAGCCAACCCTTTCAGTCAACAGCCAGTAATGTCTACACCGCAGCAA
CCTTTTGTTATTCAACAACAGGCTGGAGTCACTCCCATTCAACCAGTTCC
AGCCGCGGAACAACAAAGTCCTAATCCATTTGTTAACAATGCTAATCCTT
TCACTGAAAGATTTGTATGAGGTGAAAGAATAAGTCACGCTGTTGGTTGT
GCTTTTGCTGCCTGTCTCGCCAAAAAACAACAACAAAATCAGAACCAGCA
AAACCTTCAGTCACTTGTGGTTGACCAGGTCATAGAAAAAGTTTCATTTT
GTACTCCTGATCCACACGATGAAAAATTGTTCTCTTACATCTGTCGAGAT
GGGACTTCAAGAAGATGGCTTTGTCATTCCTTCAAAGGCATAAAGGATTC
AAGTTCAGCTGGTAAGAAAAAACAACGAGTCACACTTTGGGTAACAGAAG
ACACATTGAGAGTTACAGATGATGAAACTAAGTATTTAGGATGTCTGGAG
GTTTCAGAGTCAAGGGGAACCCAAGTTTGTTCACAGGCTGCTCATCAAAT
GAAAATGATGATACGAAGTTTATCAAGGCGACTTAGGCGAACACTCAGCT
TCAGAGGGCGAAGCAAAAGGAAGAAGGACAAAACTGGAGGTACTGTCTCT
GGTGGGGCCAGTTCGAATTGGGAAAATGATGCCCTGACTATTAAACAACA
AGGAGGTGTCAGTTTTACTGTGAAAAGAGGAACTTCAACAAGAAAAACGC
TTGAAAGTCGTCCAAATGGTGTAAAACTTCCACAACAAAGTGTAGACACA
TTACAAAAATTGAATGAAACAGAATATACTGCTAGAATAGAAAAAGCTAA
CCACACGCTTAACAATACATCAACATCAGGTGCTATGAATGGCCCAGCTG
ATATTAGTGTAGCTGCAACTCCAGCACCAACCACACCACAATCAAAACAA
CCACCAGCGAGTGCATTTGCTCCAAGACCACGCCCGAGTGGATCTGGCTC
AGATATTGGTGGACTAACAAGACACGCCTCTTTACCATATCGTGCTAAAA
AATCTGCAGGGTCATCTACCTACCAAGCTCTGACAGAAGATCCATTACCC
CCTCGGCTACCAACTACTCCCCCACCCATGACACCAAATTCTGAACAAGA
ATTCTGGTTAAATAACACTACACCTGGATTTACAGCCACCACAAATACAA
CTGTGACTGTTCAAACGCAAGCCAACCCTTTCAGTCAACAGCCAGTAATG
TCTACACCGCAGCAACCTTTTGTTATTCAACAACAGGCTGGAGTCACTCC
CATTCAACCAGTTCCAGCCGCGGAACAACAAAGTCCTAATCCATTTGTTA
ACAATGCTAATCCTTTCACTGAAAGATTTGTATGAGGTGAAAGAATAAGT
CACGCTGTTGGTTGTGCTTTTGCTGCCTGTCTCGCCAAAAAACAACAACA
AAATCAGAACCAGCAAAACCTTCAGTCACTTGTGGTTGACCAGGTCATAG
AAAAAGTTTCATTTTGTACTCCTGATCCACACGATGAAAAATTGTTCTCT
TACATCTGTCGAGATGGGACTTCAAGAAGATGGCTTTGTCATTCCTTCAA
AGGCATAAAGGATTCAAGTTCAGCTGGTAAGAAAAAACAACGAGTCACAC
TTTGGGTAACAGAAGACACATTGAGAGTTACAGATGATGAAACTAAGTAT
TTAGGATGTCTGGAGGTTTCAGAGTCAAGGGGAACCCAAGTTTGTTCACA
GGCTGCTCATCAAATGAAAATGATGATACGAAGTTTATCAAGGCGACTTA
GGCGAACACTCAGCTTCAGAGGGCGAAGCAAAAGGAAGAAGGACAAAACT
GGAGGTACTGTCTCTGGTGGGGCCAGTTCGAATTGGGAAAATGATGCCCT
GACTATTAAACAACAAGGAGGTGTCAGTTTTACTGTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001928XLOC_001928Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003469-proteinTCONS_00003469-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003469-exon-sc0000028-1575043694:63570..63814TCONS_00003469-exon-sc0000028-1575043694:63570..63814Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1575043694:60947..61021TCONS_00003469-exon-sc0000028-1575043694:60947..61021Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1575043694:60633..60713TCONS_00003469-exon-sc0000028-1575043694:60633..60713Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1575043694:59947..60087TCONS_00003469-exon-sc0000028-1575043694:59947..60087Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1575043694:58064..58153TCONS_00003469-exon-sc0000028-1575043694:58064..58153Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1575043694:56736..57861TCONS_00003469-exon-sc0000028-1575043694:56736..57861Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1575043694:55673..56682TCONS_00003469-exon-sc0000028-1575043694:55673..56682Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1510915933:63570..63814TCONS_00003469-exon-sc0000028-1510915933:63570..63814Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1510915933:60947..61021TCONS_00003469-exon-sc0000028-1510915933:60947..61021Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1510915933:60633..60713TCONS_00003469-exon-sc0000028-1510915933:60633..60713Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1510915933:59947..60087TCONS_00003469-exon-sc0000028-1510915933:59947..60087Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1510915933:58064..58153TCONS_00003469-exon-sc0000028-1510915933:58064..58153Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1510915933:56736..57861TCONS_00003469-exon-sc0000028-1510915933:56736..57861Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1510915933:55673..56682TCONS_00003469-exon-sc0000028-1510915933:55673..56682Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1491911889:63570..63814TCONS_00003469-exon-sc0000028-1491911889:63570..63814Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1491911889:60947..61021TCONS_00003469-exon-sc0000028-1491911889:60947..61021Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1491911889:60633..60713TCONS_00003469-exon-sc0000028-1491911889:60633..60713Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1491911889:59947..60087TCONS_00003469-exon-sc0000028-1491911889:59947..60087Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1491911889:58064..58153TCONS_00003469-exon-sc0000028-1491911889:58064..58153Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1491911889:56736..57861TCONS_00003469-exon-sc0000028-1491911889:56736..57861Clytia hemisphaericaexon
TCONS_00003469-exon-sc0000028-1491911889:55673..56682TCONS_00003469-exon-sc0000028-1491911889:55673..56682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:55673..63814 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.1707	13.8575	11.5533	11.0574	434.987	334.041	157.335	166.168	100.157	115.103	83.1804	77.9382	73.8189	66.8851	58.7123	54.6265	94.3031	94.5775	58.5232	70.9407	89.3404	93.2479	48.4195	59.3682	48.0639	54.7988	138.584	130.575	140.583	143.812
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006020PTB/PI_dom
IPR011993PH_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00003469 vs. Swiss-Prot (Human)
Match: NUMBL (Numb-like protein OS=Homo sapiens GN=NUMBL PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.065e-46
Identity = 80/137 (58.39%), Postives = 101/137 (73.72%), Query Frame = 3 
Query:  189 WENDALTIKQQGGVSFTVKYLGCLEVSESRGTQVCSQAAHQMKMSSAGKKKQRVTLWVTEDTLRVTDDETKSLVVDQVIEKVSFCTPDPHDEKLFSYICRDGTSRRWLCHSFKGIKDSGERISHAVGCAFAACLAKK 599
            W+ D   +++ G  SF V+YLG +EV ESRG  VC  A  ++K  + G+K  +  LWV+ D LRV DD+TK L+VDQ IEKVSFC PD + +K FSYICRDGT+RRW+CH F  +KDSGER+SHAVGCAFAACL +K
Sbjct:   66 WQADEDAVRK-GTCSFPVRYLGHVEVEESRGMHVCEDAVKKLK--AMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAFAACLERK 199
The following BLAST results are available for this feature:
BLAST of TCONS_00003469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUMBL1.065e-4658.39Numb-like protein OS=Homo sapiens GN=NUMBL PE=1 SV... [more]
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