TCONS_00003447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003447
Unique NameTCONS_00003447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2121

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003447 ID=TCONS_00003447|Name=TCONS_00003447|organism=Clytia hemisphaerica|type=transcript|length=2121bp
CAGGGAATGACTTTTAAACTTACGTTTCTCTACTGAAACCTTTTTTCCTG
ATTTCCTTTAtaacacaaaatcaaaatatcaaaaaacagTTTTGGAAGAT
GTAATATAGCTTACAAGAAGTGTATTTTGAGTgacaaaaaaagAAAACGT
GCGAACTTGAATTCAGACGATATCAACAGCCATTTAACAAATGTGAAGGA
ATAACAAAGTTTATAAAAAACTACAAAACAGAAATAAGCAAAATTCATAA
GATGACAAACACCGAGAATTCAACCACCACGTCCGAATCCCTAATAACAT
GCAATGCTGCGTCATCACCAGTGAAACCAGTGGAGCCGCTACCACCCAAA
CCACATGATGAAGTGATAATGGACAGTTGTGGGTTACTACCTCCTAGCTC
CGAGAATTCAAACTTGGATGATATTGATGAAGATAATGAAGGGTCGGATC
AGGGATCGAGTGATAGTGCATTACCGTTGTCTTCAGCTTCAAATACAAAT
AATGATTCTTCGAATGAAGAAAACGAAAGATCCAATGAAAAGAAAAGAAA
AGACATCCTACACCGTGACATTGAGAAAAGGCGTCGAGAACGCATCAACA
GAAGTTTAGTTAAACTAAAAAGCCTTGTACCTACGACACGTGACTCAATG
AAATGTAATGGGAACAGCAGATTGCAAAAAGCTAAACTTCTTGAAATGAC
GGTTGAATATTTGGAgaacatttctaaaaaagaGCCATCACAACTTTCGA
AAGATTGTAAATCGGAAAATAAACGGGGAAATGAGAGTCCGAATCGGGAC
GTTGTTGTTGAATCAGCTAAAGAGATTTATCTTACTGGTTATAAAGCAGC
AACAGAACACATTATCAAGAAGATCAGTGATGTCTACAACATATCTGGCA
ACGAATTGCAAAGTTTGACCAAAGTTATTGGTATACCTGAGGATGTCAAG
GTTCCAAACATGGTCCTTGTACCGCCCTCACCATCACCCTTAGCTAACGG
AGAAAAGAAAATGGTGGATTTGAATGACGCCATGGCGGCTCAAAAGGAGA
AGTTAAAGCGTGAAAAAGTAAACGCAATGACAGTGGCTAGCCAATATGGT
TTGAATTATACAAATGGAAGTTTAAAAGAAGAGATTTCGATGAAGCACTC
GCCTCCTTTGAGGAACGGACAAAATGCTTTTTCCTTCTCAGATCACCATC
ATCAAgaacagaaaatgaaaagtgaacACGAAAAAGAGACTGACACTCCA
GGCCCTATTTTACTTTCATGTTTAATGCAAGACCCTATGACGTCACAATA
CCACACCACAGTCCTTCCGCTCACTGCAATCATGTCCGCTGAAAAATGCC
GAAATCTCTCAATGCCCTATTTATATAAACAAAGTAAAAATGCAATAGAG
ACAGTGCTGAGCAAAAGGAAGGATGTCCCGCCTCTAACATCACCGAAAGC
ATCGCCCAACTTTTTCATGCCGCCACATAAGGCGGATGAATACGCCCACG
CCCTTGCTAGCTCTCCATTGAAACGACTTCATGATGATCGCCAAGTACCG
GTGATAATCGGAGGAAAGCGACCGCCTCAACTGACGAAAGAATACGATCG
CTCTAAAGAATACGAGAGAATGAACGGACACATGAACGGGTATCCCGACC
CTCGTGGTCCAACACCCGATAGAAATCGACTGCCAAGTACGGAAAATTCA
TTTATGGAACGAAAACAGAGGTATGACATTAATGCCAATATGGAGATGGT
GAAAGACTTTGATTTGAAGTACAAATTGAGAAACGAAGACTATTTGAGAG
GTCTACCGACGTCTAATGGAAAAGATAAGTTTTGGTATTGAGCCCAACGT
TTTTAAAGATCGTTATTTGATGGCGGAAAAGTCTAGGATTTAACGTCTAT
GTAGTCCATGCGATACAAATGATGTCTTTTTGACGCTCAAACATTTTTGG
GTTGaacttttaaagataaaaatatttaaagatttattgtttatagaTAA
TTGAGTATCTTTGTAAATTTATagtgttaatattttttaatttaaaaacg
agaaatttttgattattaTAATTGTTTAAACAAAATAACTTTGGTCTAAA
GATTAATATGTAATATAATTC
Run BLAST on NCBI

protein sequence of TCONS_00003447-protein

>TCONS_00003447-protein ID=TCONS_00003447-protein|Name=TCONS_00003447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MTNTENSTTTSESLITCNAASSPVKPVEPLPPKPHDEVIMDSCGLLPPSS
ENSNLDDIDEDNEGSDQGSSDSALPLSSASNTNNDSSNEENERSNEKKRK
DILHRDIEKRRRERINRSLVKLKSLVPTTRDSMKCNGNSRLQKAKLLEMT
VEYLENISKKEPSQLSKDCKSENKRGNESPNRDVVVESAKEIYLTGYKAA
TEHIIKKISDVYNISGNELQSLTKVIGIPEDVKVPNMVLVPPSPSPLANG
EKKMVDLNDAMAAQKEKLKREKVNAMTVASQYGLNYTNGSLKEEISMKHS
PPLRNGQNAFSFSDHHHQEQKMKSEHEKETDTPGPILLSCLMQDPMTSQY
HTTVLPLTAIMSAEKCRNLSMPYLYKQSKNAIETVLSKRKDVPPLTSPKA
SPNFFMPPHKADEYAHALASSPLKRLHDDRQVPVIIGGKRPPQLTKEYDR
SKEYERMNGHMNGYPDPRGPTPDRNRLPSTENSFMERKQRYDINANMEMV
KDFDLKYKLRNEDYLRGLPTSNGKDKFWY
Run BLAST on NCBI

transcript from alignment at sc0000028:735078..742446+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003447 ID=TCONS_00003447|Name=TCONS_00003447|organism=Clytia hemisphaerica|type=transcript|length=7369bp|location=Sequence derived from alignment at sc0000028:735078..742446+ (Clytia hemisphaerica)
CAGGGAATGACTTTTAAACTTACGTTTCTCTACTGAAACCTTTTTTCCTG
ATTTCCTTTAtaacacaaaatcaaaatatcaaaaaacagTTTTGGAAGAT
GTAATATAGCTTACAAGAAGTGTATTTTGAGTgacaaaaaaaggtaaaat
ttttTGGCTTACTACGGTTTATTTTTTATCGTCGGGGATCGAGATATGTT
TATGTGTTAGTAAAATTTCGGATGTTTGGAGTTTTGTTTGTCCTTTTTCA
TTTCGTGAAAGCACGTAAAGGGCATACGCCGTGCNagaacattttaaggc
tttgcagactctaaaacagtcaaatttttaggaaaatggacaaaaataca
taaaaaatggggaaaataagaacattttcaggcttgaaactcgaatattt
aagaacatccgaaggcttcaaaaatttagatacTCTGNAGTTTTGTTTGT
CCTTTTTCATTTCGTGAAAGCACGTAAAGGGCATACGCCGTGCCTACTTA
TACAACTTAGAGGCTTGTAGTGTGGTTGCGCAATTTTTAATAGTGGCTAG
CAATAAGAGGGTCACCACTTCCACGCTTTCAATTTCACTTTATGTTAAGT
TATCATCAAATGTAGACTACAGTCTTATTGTCTCGTGACAAAATGTATGA
TATTGGAGCTTGCTCCTGTTAGGTTTTTTAACAAAAACGTGACTTATAGG
TTCCACAGTATCTTATCCAAAAAGGTATATTCTGTTCACGAGGAGACAGA
CGTGTCAAAGACAATTCTANCCCGAGTGGATATACACGGTCTAAATTTGC
CAATTTGATAAATGACAGACTTAAGGCTATAACTCATGACCATTTGATTT
AAAAGGGCATAAGAATACTTTTCTAATGGTACNTACACGGTCTAAATTTG
CCAATTTGATAAATGACAGACTTAAGGCTATAACTCATGACCATTTGATT
TAAAAGGGCATAAACGGCATGCTTTTAGAAAGGGCGTAAGAATACTTTTC
TAATGGTATGCCAAAGCCTTTACTCTTATAAAAACTTGAAGAGCCTTGTC
ATAAGTTAATGTTTCCATGACAGCAAGTACTATATTCTTTTCGGAAGACA
CTGAGTCCAATTCAAAGACTatcttatcggcccttttaTGCCGACCCTTA
TTGACGTTATAAGGGCCGTCGTAAGGGATTAAAATTTTGGTTAGCTGATA
TAGTACTGATTTTAAacgtatgtgtgtttttctgtgaaGAAGACGGTTAG
CATCTATTTGTCTATATCCAGACTGACTGAGAACAATGATAGATCAGCAG
TTTTACAGTCCTTAATTTTGCGAGTTAGATCTGTGGATTAATCGCCTCAA
TCACCCCACCgttctcaaaagtgcaaatgatacataaactcgctggTAAA
GGAAATGGTTGGTTAGCTTATATGAGTGAAGATATTGGTCAGTAATCATA
ACTGATTATAGATGTTGCACTCTTCAAATTTACTTTGATGGGATAAATTT
TCTTAGAGATTAAATAATAATTCGCGAAAAGACCACATTGAAATTTGGAA
AGGTCTTATCCACGTAAGAACAGAATTCCAAAATTGTCAGATGATTACTT
TTAAAATGTtaactggcatcaaagaagcgctaataatgcgtatttcaaca
accagtaTGTGTAATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNgttgaaacaacgttgtgtgccagctgggaa
gtctccgcaaaatcttcaaatgAGCTCAACTGCGAAACTTAATACCCGCA
AAAATTTATCTTATCAAAGTAATCAATTGGAAGTCCTTCTTTCACTAAAA
ACAATtatccaaagtcgagatatgacgatttgaaatctttcaaaatgcgt
tcttttaattattttagttctttcgttgaaattctattgttttcttgcta
aaaacaaaaaactctgATACTGTATTTCGTCTTTGGAAAAGAGTTAGACA
AAAAGATTTGGAACTTTTGATCAAAGCCATTAAAGTAatctcaaaacatt
tgaaactatctgattatccctttaagatatttgtttttccaGTAGGAGGG
TGGCTTGGGTTCGAGTtttagtcaggtagaattaggtcATAAACCGCCAA
AAACgggacaaaaatggtgtagagatgaaattttgcacagaggtccagga
acatgtcaggaatctgcaggaatcaccaaaaaaaagccctacccccagga
agatgggaacaccctcaaatccataatggcggacatggtacttttttcta
caattaatcAAGGGGTGACCCTTGATAActgatttttaatggttttcaaa
tgtcaaaaataactagacAGGGAGACTTAACTTGGCACAGCACAACCTTT
TCATTTCCTAAACGTGAGGAACAGCGAGCAATACGAGACGATTATGGAAA
CATAAgtttttattatgatataaTATACTCTCCAACACACTTTCTAGCAT
CAGGATTTTTTTAGATCCGTCTGAGAGGCGCTCTGTGATTGGCTCCATGT
AATAAAACATCAAGTAACATGTGACAAAATGTCACGCATAAAAtgcataa
aatatttttttatctacAGAAAACGTGCGAACTTGAATTCAGACGATATC
AACAGCCATTTAACAAATGTGAAGGAATAACAAAGTTTATAAAAAACGTG
AGTAGATAATTCTTAAAGCCTTCGATTGGCTAGGCATTTTCACATGCAAT
AGTCCTGCTGAGGGTGGAGGATCTGTTGTAAAGAAATGGNAACAATAAAT
TTATACATCTCGAGAAAAGTGTATTAAGTTGAATTAATTAATTTAATGGA
ATTAATTAAGTCAAAGTTTACCCATACAAAATACGAAGTCGATAGCACAA
TTAGAGCGCTCTaccacgtcaaaatttgaaaatttgtggaAACCCTTTTT
GGTCCACCCGGTAAATCTCCTGTTATCTAACTTTTAAGTCTCATCATTAT
TTaagaaagtttctgctcgcgaaagtttgtacgcctaaagtgcATGAATC
ATCCACATTGACATTCTATTAAAGCATTCTAAACCTACTTACAACCTTTT
CCTTTACAGTACAAAACAGAAATAAGCAAAATTCATAAGATGACAAACAC
CGAGAATTCAACCACCACGTCCGAATCCCTAATAACATGCAATGCTGCGT
CATCACCAGTGAAACCAGTGGAGCCGCTACCACCCAAACCACATGATGAA
GTGATAATGGACAGTTGTGGGTTACTACCTCCTAGCTCCGAGAATTCAAA
CTTGGATGATATTGATGAAGATAATGAAGGGTCGGATCAGGGATCGAGTG
ATAGTGCATTACCGTTGTCTTCAGCTTCAAATACAAATAATGATTCTTCG
AATGAAGAAAACGAAAGATCCAATGAAAAGAAAAGAGTGAGTGATCTTAA
TCTTCTTCGAGGTCTTAGACGTCACTTGAGGACGCGCACGTCTTCTACTG
TACCTCAGAAAACAGGTTGTCAcattgacctttatatatcctaGACCAGA
GCTTTATCATttatctttgatcggagtttttagaaaaatgtaacACTTCT
AGATGTGGGctaaaaatgttattaacatgtttttattttcaccattttgt
gagaatttttgtcaattttcttaagaaatcgggagTTTTCACGAagaatt
aaataaaatgttcttaacttgttctttatttttgccatcgaagtcttatg
ttcttatatcgtttgttcttatataaaaagcatGTATCtcaacttattat
ttttttctcactACAGAAAGACATCCTACACCGTGACATTGAGAAAAGGC
GTCGAGAACGCATCAACAGAAGTTTAGTTAAACTAAAAAGCCTTGTACCT
ACGACACGTGACTCAATGAAATGTAATGGGAACAGCAGATTGCAAAAAGC
TAAACTTCTTGAAATGACGGTTGAATATTTGGAgaacatttctaaaaaag
gtAAGGTTAGGCACTtcattcaaaatcaaatttGCGAAATAAAAGAGGAT
AAAATAATAACCTTATACACAGCAACTATCTATGAAACagcattttcaaa
atataatagaagttcttctttttgttttagaGCCATCACAACTTTCGAAA
GATTGTAAATCGGAAAATAAACGGGGAAATGAGAGTCCGAATCGGGACGT
TGTTGTTGAATCAGCTAAAGAGATTTATCTTACTGGTTATAAAGCAGCAA
CAGAACACATTATCAAGAAGATCAGTGATGTCTACAACATATCTGGCAAC
GAATTGCAAAGTTTGACCAAAGTTATTGGTATACCTGAGGATGTCAAGGT
TCCAAACATGGTCCTTGTACCGCCCTCACCATCACCCTTAGCTAACGGAG
AAAAGAAAATGGTGGATTTGAATGACGCCATGGCGGCTCAAAAGGAGAAG
TTAAAGCGTGAAAAAGTAAACGCAATGACAGTGGCTAGCCAATATGGTTT
GAATTATACAAATGGAAGTTTAAAAGAAGAGATTTCGATGAAGCACTCGC
CTCCTTTGAGGAACGGACAAAATGCTTTTTCCTTCTCAGATCACCATCAT
CAAgaacagaaaatgaaaagtgaacACGAAAAAGAGACTGACACTCCAGG
CCCTATTTTACTTTCATGTTTAATGCAAGACCCTATGACGTCACAATACC
ACACCACAGTCCTTCCGCTCACTGCAATCATGTCCGCTGAAAAATGCCGA
AATCTCTCAATGCCCTATTTATATAAACAAAGTAAAAATGCAATAGAGAC
AGTGCTGAGCAAAAGGAAGGATGTCCCGCCTCTAACATCACCGAAAGCAT
CGCCCAACTTTTTCATGCCGCCACATAAGGCGGATGAATACGCCCACGCC
CTTGCTAGCTCTCCATTGAAACGACTTCATGATGATCGCCAAGTACCGGT
GATAATCGGAGGAAAGCGACCGCCTCAACTGACGAAAGAATACGATCGCT
CTAAAGAATACGAGAGAATGAACGGACACATGAACGGGTATCCCGACCCT
CGTGGTCCAACACCCGATAGAAATCGACTGCCAAGTACGGAAAATTCATT
TATGGAACGAAAACAGAGGTATGACATTAATGCCAATATGGAGATGGTGA
AAGACTTTGATTTGAAGTACAAATTGAGAAACGAAGACTATTTGAGAGGT
CTACCGACGTCTAATGGAAAAGATAAGTTTTGGTATTGAGCCCAACGTTT
TTAAAGATCGTTATTTGATGGCGGAAAAGTCTAGGATTTAACGTCTATGT
AGTCCATGCGATACAAATGATGTCTTTTTGACGCTCAAACATTTTTGGGT
TGaacttttaaagataaaaatatttaaagatttattgtttatagaTAATT
GAGTATCTTTGTAAATTTATagtgttaatattttttaatttaaaaacgag
aaatttttgattattaTAATTGTTTAAACAAAATAACTTTGGTCTAAAGA
TTAATATGTAATATAATTC

Coding sequence (CDS) from alignment at sc0000028:735078..742446+

>TCONS_00003447 ID=TCONS_00003447|Name=TCONS_00003447|organism=Clytia hemisphaerica|type=CDS|length=4770bp|location=Sequence derived from alignment at sc0000028:735078..742446+ (Clytia hemisphaerica)
ATGACAAACACCGAGAATTCAACCACCACGTCCGAATCCCTAATAACATG
CAATGCTGCGTCATCACCAGTGAAACCAGTGGAGCCGCTACCACCCAAAC
CACATGATGAAGTGATAATGGACAGTTGTGGGTTACTACCTCCTAGCTCC
GAGAATTCAAACTTGGATGATATTGATGAAGATAATGAAGGGTCGGATCA
GGGATCGAGTGATAGTGCATTACCGTTGTCTTCAGCTTCAAATACAAATA
ATGATTCTTCGAATGAAGAAAACGAAAGATCCAATGAAAAGAAAAGAAAA
GACATCCTACACCGTGACATTGAGAAAAGGCGTCGAGAACGCATCAACAG
AAGTTTAGTTAAACTAAAAAGCCTTGTACCTACGACACGTGACTCAATGA
AATGTAATGGGAACAGCAGATTGCAAAAAGCTAAACTTCTTGAAATGACG
GTTGAATATTTGGAgaacatttctaaaaaagaGCCATCACAACTTTCGAA
AGATTGTAAATCGGAAAATAAACGGGGAAATGAGAGTCCGAATCGGGACG
TTGTTGTTGAATCAGCTAAAGAGATTTATCTTACTGGTTATAAAGCAGCA
ACAGAACACATTATCAAGAAGATCAGTGATGTCTACAACATATCTGGCAA
CGAATTGCAAAGTTTGACCAAAGTTATTGGTATACCTGAGGATGTCAAGG
TTCCAAACATGGTCCTTGTACCGCCCTCACCATCACCCTTAGCTAACGGA
GAAAAGAAAATGGTGGATTTGAATGACGCCATGGCGGCTCAAAAGGAGAA
GTTAAAGCGTGAAAAAGTAAACGCAATGACAGTGGCTAGCCAATATGGTT
TGAATTATACAAATGGAAGTTTAAAAGAAGAGATTTCGATGAAGCACTCG
CCTCCTTTGAGGAACGGACAAAATGCTTTTTCCTTCTCAGATCACCATCA
TCAAgaacagaaaatgaaaagtgaacACGAAAAAGAGACTGACACTCCAG
GCCCTATTTTACTTTCATGTTTAATGCAAGACCCTATGACGTCACAATAC
CACACCACAGTCCTTCCGCTCACTGCAATCATGTCCGCTGAAAAATGCCG
AAATCTCTCAATGCCCTATTTATATAAACAAAGTAAAAATGCAATAGAGA
CAGTGCTGAGCAAAAGGAAGGATGTCCCGCCTCTAACATCACCGAAAGCA
TCGCCCAACTTTTTCATGCCGCCACATAAGGCGGATGAATACGCCCACGC
CCTTGCTAGCTCTCCATTGAAACGACTTCATGATGATCGCCAAGTACCGG
TGATAATCGGAGGAAAGCGACCGCCTCAACTGACGAAAGAATACGATCGC
TCTAAAGAATACGAGAGAATGAACGGACACATGAACGGGTATCCCGACCC
TCGTGGTCCAACACCCGATAGAAATCGACTGCCAAGTACGGAAAATTCAT
TTATGGAACGAAAACAGAGGTATGACATTAATGCCAATATGGAGATGGTG
AAAGACTTTGATTTGAAGTACAAATTGAGAAACGAAGACTATTTGAGAGG
TCTACCGACGTCTAATGGAAAAGATAAGTTTTGGTATTGAATGACAAACA
CCGAGAATTCAACCACCACGTCCGAATCCCTAATAACATGCAATGCTGCG
TCATCACCAGTGAAACCAGTGGAGCCGCTACCACCCAAACCACATGATGA
AGTGATAATGGACAGTTGTGGGTTACTACCTCCTAGCTCCGAGAATTCAA
ACTTGGATGATATTGATGAAGATAATGAAGGGTCGGATCAGGGATCGAGT
GATAGTGCATTACCGTTGTCTTCAGCTTCAAATACAAATAATGATTCTTC
GAATGAAGAAAACGAAAGATCCAATGAAAAGAAAAGAAAAGACATCCTAC
ACCGTGACATTGAGAAAAGGCGTCGAGAACGCATCAACAGAAGTTTAGTT
AAACTAAAAAGCCTTGTACCTACGACACGTGACTCAATGAAATGTAATGG
GAACAGCAGATTGCAAAAAGCTAAACTTCTTGAAATGACGGTTGAATATT
TGGAgaacatttctaaaaaagaGCCATCACAACTTTCGAAAGATTGTAAA
TCGGAAAATAAACGGGGAAATGAGAGTCCGAATCGGGACGTTGTTGTTGA
ATCAGCTAAAGAGATTTATCTTACTGGTTATAAAGCAGCAACAGAACACA
TTATCAAGAAGATCAGTGATGTCTACAACATATCTGGCAACGAATTGCAA
AGTTTGACCAAAGTTATTGGTATACCTGAGGATGTCAAGGTTCCAAACAT
GGTCCTTGTACCGCCCTCACCATCACCCTTAGCTAACGGAGAAAAGAAAA
TGGTGGATTTGAATGACGCCATGGCGGCTCAAAAGGAGAAGTTAAAGCGT
GAAAAAGTAAACGCAATGACAGTGGCTAGCCAATATGGTTTGAATTATAC
AAATGGAAGTTTAAAAGAAGAGATTTCGATGAAGCACTCGCCTCCTTTGA
GGAACGGACAAAATGCTTTTTCCTTCTCAGATCACCATCATCAAgaacag
aaaatgaaaagtgaacACGAAAAAGAGACTGACACTCCAGGCCCTATTTT
ACTTTCATGTTTAATGCAAGACCCTATGACGTCACAATACCACACCACAG
TCCTTCCGCTCACTGCAATCATGTCCGCTGAAAAATGCCGAAATCTCTCA
ATGCCCTATTTATATAAACAAAGTAAAAATGCAATAGAGACAGTGCTGAG
CAAAAGGAAGGATGTCCCGCCTCTAACATCACCGAAAGCATCGCCCAACT
TTTTCATGCCGCCACATAAGGCGGATGAATACGCCCACGCCCTTGCTAGC
TCTCCATTGAAACGACTTCATGATGATCGCCAAGTACCGGTGATAATCGG
AGGAAAGCGACCGCCTCAACTGACGAAAGAATACGATCGCTCTAAAGAAT
ACGAGAGAATGAACGGACACATGAACGGGTATCCCGACCCTCGTGGTCCA
ACACCCGATAGAAATCGACTGCCAAGTACGGAAAATTCATTTATGGAACG
AAAACAGAGGTATGACATTAATGCCAATATGGAGATGGTGAAAGACTTTG
ATTTGAAGTACAAATTGAGAAACGAAGACTATTTGAGAGGTCTACCGACG
TCTAATGGAAAAGATAAGTTTTGGTATTGAATGACAAACACCGAGAATTC
AACCACCACGTCCGAATCCCTAATAACATGCAATGCTGCGTCATCACCAG
TGAAACCAGTGGAGCCGCTACCACCCAAACCACATGATGAAGTGATAATG
GACAGTTGTGGGTTACTACCTCCTAGCTCCGAGAATTCAAACTTGGATGA
TATTGATGAAGATAATGAAGGGTCGGATCAGGGATCGAGTGATAGTGCAT
TACCGTTGTCTTCAGCTTCAAATACAAATAATGATTCTTCGAATGAAGAA
AACGAAAGATCCAATGAAAAGAAAAGAAAAGACATCCTACACCGTGACAT
TGAGAAAAGGCGTCGAGAACGCATCAACAGAAGTTTAGTTAAACTAAAAA
GCCTTGTACCTACGACACGTGACTCAATGAAATGTAATGGGAACAGCAGA
TTGCAAAAAGCTAAACTTCTTGAAATGACGGTTGAATATTTGGAgaacat
ttctaaaaaagaGCCATCACAACTTTCGAAAGATTGTAAATCGGAAAATA
AACGGGGAAATGAGAGTCCGAATCGGGACGTTGTTGTTGAATCAGCTAAA
GAGATTTATCTTACTGGTTATAAAGCAGCAACAGAACACATTATCAAGAA
GATCAGTGATGTCTACAACATATCTGGCAACGAATTGCAAAGTTTGACCA
AAGTTATTGGTATACCTGAGGATGTCAAGGTTCCAAACATGGTCCTTGTA
CCGCCCTCACCATCACCCTTAGCTAACGGAGAAAAGAAAATGGTGGATTT
GAATGACGCCATGGCGGCTCAAAAGGAGAAGTTAAAGCGTGAAAAAGTAA
ACGCAATGACAGTGGCTAGCCAATATGGTTTGAATTATACAAATGGAAGT
TTAAAAGAAGAGATTTCGATGAAGCACTCGCCTCCTTTGAGGAACGGACA
AAATGCTTTTTCCTTCTCAGATCACCATCATCAAgaacagaaaatgaaaa
gtgaacACGAAAAAGAGACTGACACTCCAGGCCCTATTTTACTTTCATGT
TTAATGCAAGACCCTATGACGTCACAATACCACACCACAGTCCTTCCGCT
CACTGCAATCATGTCCGCTGAAAAATGCCGAAATCTCTCAATGCCCTATT
TATATAAACAAAGTAAAAATGCAATAGAGACAGTGCTGAGCAAAAGGAAG
GATGTCCCGCCTCTAACATCACCGAAAGCATCGCCCAACTTTTTCATGCC
GCCACATAAGGCGGATGAATACGCCCACGCCCTTGCTAGCTCTCCATTGA
AACGACTTCATGATGATCGCCAAGTACCGGTGATAATCGGAGGAAAGCGA
CCGCCTCAACTGACGAAAGAATACGATCGCTCTAAAGAATACGAGAGAAT
GAACGGACACATGAACGGGTATCCCGACCCTCGTGGTCCAACACCCGATA
GAAATCGACTGCCAAGTACGGAAAATTCATTTATGGAACGAAAACAGAGG
TATGACATTAATGCCAATATGGAGATGGTGAAAGACTTTGATTTGAAGTA
CAAATTGAGAAACGAAGACTATTTGAGAGGTCTACCGACGTCTAATGGAA
AAGATAAGTTTTGGTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001922XLOC_001922Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003447-proteinTCONS_00003447-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003447-exon-sc0000028-1491911889:735078..735220TCONS_00003447-exon-sc0000028-1491911889:735078..735220Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1510915933:735078..735220TCONS_00003447-exon-sc0000028-1510915933:735078..735220Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1575043694:735078..735220TCONS_00003447-exon-sc0000028-1575043694:735078..735220Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1491911889:739547..739624TCONS_00003447-exon-sc0000028-1491911889:739547..739624Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1510915933:739547..739624TCONS_00003447-exon-sc0000028-1510915933:739547..739624Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1575043694:739547..739624TCONS_00003447-exon-sc0000028-1575043694:739547..739624Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1491911889:740037..740363TCONS_00003447-exon-sc0000028-1491911889:740037..740363Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1510915933:740037..740363TCONS_00003447-exon-sc0000028-1510915933:740037..740363Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1575043694:740037..740363TCONS_00003447-exon-sc0000028-1575043694:740037..740363Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1491911889:740744..740927TCONS_00003447-exon-sc0000028-1491911889:740744..740927Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1510915933:740744..740927TCONS_00003447-exon-sc0000028-1510915933:740744..740927Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1575043694:740744..740927TCONS_00003447-exon-sc0000028-1575043694:740744..740927Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1491911889:741058..742446TCONS_00003447-exon-sc0000028-1491911889:741058..742446Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1510915933:741058..742446TCONS_00003447-exon-sc0000028-1510915933:741058..742446Clytia hemisphaericaexon
TCONS_00003447-exon-sc0000028-1575043694:741058..742446TCONS_00003447-exon-sc0000028-1575043694:741058..742446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:735078..742446 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0185553	0	0.0630278	0.0411086	36.7586	26.793	21.1362	22.1548	17.1373	24.2487	16.4115	17.7086	15.1419	12.38	6.32179	7.45137	5.41854	18.5032	22.9793	13.9736	38.3564	40.3755	27.5513	36.402	55.8015	47.0101	14.1718	11.7574	2.53318	1.32193
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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