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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003446 ID=TCONS_00003446|Name=TCONS_00003446|organism=Clytia hemisphaerica|type=transcript|length=2325bp
taattggtATGTGATgtgctttttctttctttttgagtATAAAGTaacga
aaaaactttttcaaaattataagttaaaaaatgaaatgttATTCTGttgt
gaacaaaaaaaaaataaacgaaCTAAATCCAAAGAATAACAGAAAACGAG
TAATGGCCTAATAAAAACACGAAATGCAGGAACGATTTTCCCGTTTCAAG
CTGAAGGCTAGAGATGAATCTGCAACCTTTCTTTGACAAACCAAAGTTAA
ACGTTAAATTTGCACCACATTTCGGATGGTGAGGGATTGAATCTAGCTCt
tcattgttttttcttcattgtcaggttttacaattttcaaattttgttac
tAAATTGAAAACCATACGGGCTGATGCAACTCAGGCAGGAAATATGTGGC
TATCAATTCCTACAGAGTAGATTCAACTCAAGCCTTCGGCTATACCCTAT
TGGGGATGATAATCGACCTAGCCTTTTATTTCTCATTGAGATTTTAAAGA
ACAAATGGTTTTCCAATAAGCCGACAACATTCGCATAGCATACACAATGA
CCTTTTATCTCAATACATCAATTTTTTGTACCCAACTTTATGTCCAAGGT
TATGTCCTTCAAAAAAGAAAGCTTTCAAATCAACCTGGGTATCAAATAAT
GGAATGGGTAAAAAACTAAAACATCACGAAAATATTGGATCAAAGTTGGC
TTCGAATGAAAATGCTCTCTAATATGACGTTCTACCTTTCGATAAGTCAC
TGAGGGTTTTCGCTCCCGTCTTGTTCGATTTCTAGCATGTAAAGAGCTAC
ATACCAGGCAAGTATACCAGAGCTTTTGAGATGTTTTAAGTAAGGGATCG
TAAGTagtcagaaaaaataaaaaataaaaatgataattagaaaaaaaaaa
tgaaaaaacaaaaattaatgataataaaaaatagtttcttttttaaaact
CAAGTTGTTActcttttttaaagaattttgaaattcatatttcgttttga
ATGAATTTCTTGCGTGCATAAATATAATTGGAAGATACGTTGTTTTTAAA
ATGGGTATaataatattatattattttggtACTGTGTAAGACCCACACCC
TGATTTTATTTATACATCCCTAAGTTGAAGGGCGGGAAATCTAAGAGCGC
TGTTTACCTTCACCTGAGGTCAGAACCAGCCGCTTTCCACCTTCACGTCT
CGCGGTTTCTTTCGTGCTTGAAAATACAGCATGAGTAAATAGCTTTGCAT
TTAGGTATGGTCATGATTGATAGAGCCGTTTGCGATCACGGGTGGTTTTT
CCTCAATACTATTATTTCGGCTACCGGAGTTTTTAAAAGATGATATCAAA
ACTCCGGTCGTATTGTTCGCTTGTCCTTTTGAATGATTTGAACGAGTTTC
TAATGAATTTTGTCCGATATTAGTTCTATTATTCAAGGGAGAAGACCCAA
GAGTTGTTGTTGAATTCGGAGGTGTCGTTCCGCTGTTTCGATTTTCATTC
CGGTTATTATCGAAAGACGTTTTCCGGCTGTTATTACCGCTGGTCGGTGG
GTGTATGTGTCGGAAATCACCGGATAATTTGCGTTCTTTATCTTCGACGA
TTTTCTTATGAATTTCTTGGTGCAGTCTCTTATCGAATTCACGACTGAGT
TTACGGCTGATATCTCTGTCTAATTTCCGTTCGAAATCAGGCGTAAATTT
CTTTTCTTGCTTCTCCTGCGTTCGTTGCTTCTCTTCTTCCATTTTACGAC
CCATCTCGACGTAATATTCGAATGCGCGTAAAATAGGATTTAGCAAGAAG
TCCTGAAGAGCAAAAAATGtgaaagtcataaaaaaaaaacacaataacTC
ATAGAAATCGAGAATTTAGACGGCCGATTTTCCGCTTTGCCTATATCATA
ATTGCTAGAGTAGGCAAGAAGTGGGTACAAAGTTGgcaattgaaattttt
tggttgaaaaagattgaaaaaaggCCATGGCATTGAAGTCGATAGAAGGC
AaagcattgactttagacagcaaACTTTCTGTCCACTTTtgattcacaat
tagaataggcagggtgaAAAATGGACCATCCAGACTAGAGCTTAATATAG
AGAGAGCGTTAAAAAAATCGATTGTTAgatataaaagaaacaaaagaccT
ATTTCATAAACTAGTAGAAAGAGTACCTCGAATGCGGGGAATAATTCTGA
TAGCGATTGATACAGTGGGATGAGCACGAATTTGATAAAACCAATTTGTG
CAGATGATTTGGTGACTTTTTCACGGTCCATGAAAGGTGCTGTTGGAAga
ccttccaatttttcagcaTCACTCT Run BLAST on NCBI transcript from alignment at sc0000028:671909..674233+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003446 ID=TCONS_00003446|Name=TCONS_00003446|organism=Clytia hemisphaerica|type=transcript|length=2325bp|location=Sequence derived from alignment at sc0000028:671909..674233+ (Clytia hemisphaerica)
taattggtATGTGATgtgctttttctttctttttgagtATAAAGTaacga
aaaaactttttcaaaattataagttaaaaaatgaaatgttATTCTGttgt
gaacaaaaaaaaaataaacgaaCTAAATCCAAAGAATAACAGAAAACGAG
TAATGGCCTAATAAAAACACGAAATGCAGGAACGATTTTCCCGTTTCAAG
CTGAAGGCTAGAGATGAATCTGCAACCTTTCTTTGACAAACCAAAGTTAA
ACGTTAAATTTGCACCACATTTCGGATGGTGAGGGATTGAATCTAGCTCt
tcattgttttttcttcattgtcaggttttacaattttcaaattttgttac
tAAATTGAAAACCATACGGGCTGATGCAACTCAGGCAGGAAATATGTGGC
TATCAATTCCTACAGAGTAGATTCAACTCAAGCCTTCGGCTATACCCTAT
TGGGGATGATAATCGACCTAGCCTTTTATTTCTCATTGAGATTTTAAAGA
ACAAATGGTTTTCCAATAAGCCGACAACATTCGCATAGCATACACAATGA
CCTTTTATCTCAATACATCAATTTTTTGTACCCAACTTTATGTCCAAGGT
TATGTCCTTCAAAAAAGAAAGCTTTCAAATCAACCTGGGTATCAAATAAT
GGAATGGGTAAAAAACTAAAACATCACGAAAATATTGGATCAAAGTTGGC
TTCGAATGAAAATGCTCTCTAATATGACGTTCTACCTTTCGATAAGTCAC
TGAGGGTTTTCGCTCCCGTCTTGTTCGATTTCTAGCATGTAAAGAGCTAC
ATACCAGGCAAGTATACCAGAGCTTTTGAGATGTTTTAAGTAAGGGATCG
TAAGTagtcagaaaaaataaaaaataaaaatgataattagaaaaaaaaaa
tgaaaaaacaaaaattaatgataataaaaaatagtttcttttttaaaact
CAAGTTGTTActcttttttaaagaattttgaaattcatatttcgttttga
ATGAATTTCTTGCGTGCATAAATATAATTGGAAGATACGTTGTTTTTAAA
ATGGGTATaataatattatattattttggtACTGTGTAAGACCCACACCC
TGATTTTATTTATACATCCCTAAGTTGAAGGGCGGGAAATCTAAGAGCGC
TGTTTACCTTCACCTGAGGTCAGAACCAGCCGCTTTCCACCTTCACGTCT
CGCGGTTTCTTTCGTGCTTGAAAATACAGCATGAGTAAATAGCTTTGCAT
TTAGGTATGGTCATGATTGATAGAGCCGTTTGCGATCACGGGTGGTTTTT
CCTCAATACTATTATTTCGGCTACCGGAGTTTTTAAAAGATGATATCAAA
ACTCCGGTCGTATTGTTCGCTTGTCCTTTTGAATGATTTGAACGAGTTTC
TAATGAATTTTGTCCGATATTAGTTCTATTATTCAAGGGAGAAGACCCAA
GAGTTGTTGTTGAATTCGGAGGTGTCGTTCCGCTGTTTCGATTTTCATTC
CGGTTATTATCGAAAGACGTTTTCCGGCTGTTATTACCGCTGGTCGGTGG
GTGTATGTGTCGGAAATCACCGGATAATTTGCGTTCTTTATCTTCGACGA
TTTTCTTATGAATTTCTTGGTGCAGTCTCTTATCGAATTCACGACTGAGT
TTACGGCTGATATCTCTGTCTAATTTCCGTTCGAAATCAGGCGTAAATTT
CTTTTCTTGCTTCTCCTGCGTTCGTTGCTTCTCTTCTTCCATTTTACGAC
CCATCTCGACGTAATATTCGAATGCGCGTAAAATAGGATTTAGCAAGAAG
TCCTGAAGAGCAAAAAATGtgaaagtcataaaaaaaaaacacaataacTC
ATAGAAATCGAGAATTTAGACGGCCGATTTTCCGCTTTGCCTATATCATA
ATTGCTAGAGTAGGCAAGAAGTGGGTACAAAGTTGgcaattgaaattttt
tggttgaaaaagattgaaaaaaggCCATGGCATTGAAGTCGATAGAAGGC
AaagcattgactttagacagcaaACTTTCTGTCCACTTTtgattcacaat
tagaataggcagggtgaAAAATGGACCATCCAGACTAGAGCTTAATATAG
AGAGAGCGTTAAAAAAATCGATTGTTAgatataaaagaaacaaaagaccT
ATTTCATAAACTAGTAGAAAGAGTACCTCGAATGCGGGGAATAATTCTGA
TAGCGATTGATACAGTGGGATGAGCACGAATTTGATAAAACCAATTTGTG
CAGATGATTTGGTGACTTTTTCACGGTCCATGAAAGGTGCTGTTGGAAga
ccttccaatttttcagcaTCACTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003446-exon-sc0000028-1491911889:671909..674233 | TCONS_00003446-exon-sc0000028-1491911889:671909..674233 | Clytia hemisphaerica | exon |
| TCONS_00003446-exon-sc0000028-1510915933:671909..674233 | TCONS_00003446-exon-sc0000028-1510915933:671909..674233 | Clytia hemisphaerica | exon |
| TCONS_00003446-exon-sc0000028-1575043694:671909..674233 | TCONS_00003446-exon-sc0000028-1575043694:671909..674233 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000028 | supercontig | sc0000028:671909..674233 + |
Blast
The following BLAST results are available for this feature:
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