TCONS_00003441 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003441
Unique NameTCONS_00003441
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003441 ID=TCONS_00003441|Name=TCONS_00003441|organism=Clytia hemisphaerica|type=transcript|length=598bp
CAACAGAATCACCAAAGACAACTTATCAACCACCAACATTGAACCCGCTT
GATAAATGTCAATTGCCAGATGTTGCCGTCAGTCGGATCATTTCTGGTCG
AGACGCCAAGCCTGGACAATTCCCATGGCAAGTTGCAATGTATGTTAACG
GCCATTTCAGTTGTGGCGGATCTATCTTGAAGCCTGATTGGTTGATCACG
GCTGCACATTGTCTCCAGGGATTGCAACCGAGTCATAATATCACTTTTGT
TGCAGGTGAATTGGATCGATCAGTATCATCTGGCTATGAACAAACATCAG
AAATCGAGATGCCTCACATACATCCCCATTATGAAATGCCAATCTCTTTG
AACAATGATATCGCACTGGTTAAATTAAAAAGACCTTTCAAATTCAACCG
GTTCGTTCAACCAGTTTGTATTCCTCAGCAACACGAAGAAATTGCACCTG
GATCCAAGTGCATCCTGTCAGgttgGGGTAGAACAAAGAAGGACGGTGAG
TCACCAAATGTTTTAAAGTATACAAAGCTGTATGTGGTAAACCAAACACA
ATGCGTGGCGTGGAATCGACGAATCACTAACTATATGATGTGTGGGTA
Run BLAST on NCBI

transcript from alignment at sc0000028:558045..560682+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003441 ID=TCONS_00003441|Name=TCONS_00003441|organism=Clytia hemisphaerica|type=transcript|length=2638bp|location=Sequence derived from alignment at sc0000028:558045..560682+ (Clytia hemisphaerica)
CAACAGAATCACCAAAGACAACTTATCAACCACCAACATTGAACCCGCTT
GGTATTTATCgtctaaaaattgttataaaacacttgcgaaatttgtatgg
gattgggcttttccagaaaatctttttaaaccCTCTGTAGGATATTGATT
TCTCGAactatcgaaccccctggatatcctactttattagtaaagacccc
tggatattcactcttaaaaatatgctcaactcTGCGGATATCCTCTCGTA
TAAAGATGCTTtctatttctggaaaagtctATTTAAGGAAGCAGATTCAA
AACTGTTCTTAATGCTCTTGACCTCTTTCGAAGAAAATAAGCGTTTCTGT
TATCTGATTTTAGCCAGGTTTTTATCCGCAACCTTAACttgtttaaccct
ttcagttaaaacaaaaaatgaagtttcgCAGCTAACGAGAGTTCCGGAAC
CTCATAGTTATGGAGATATAGCTCGTCAAAGTAAAGTTCCGGAGGTACTC
GCTATGCGGATGTGTGAGACTGAAAAGGTTTTTATATCAGAATCTTTATT
TGAGAAAGTTTGACCATCTTATCCATTGTTACCATCACCATATAATTTTG
TCTTCCTCTGCTTACACAACAGATAAATGTCAATTGCCAGATGTTGCCGT
CAGTCGGATCATTTCTGGTCGAGACGCCAAGCCTGGACAATTCCCATGGC
AAGTTGCAATGTATGTTAACGGCCATTTCAGTTGTGGCGGATCTATCTTG
AAGCCTGATTGGTTGATCACGGCTGCACATTGTCTCCAGGGATTGCAACC
GAGTCATAATATCACTTTTGTTGCAGGTAGCGAATTTATTTGAAACAAAT
CTTCTTATTGTAGCCATAGAGAATTTCATCGTAATAAGAAAGATCTTCCA
GATATCCAAATCTCCGGTCACTGTTAAGCGTGTGTTAGGGCTTGAAAATC
TCACCTGCTTCTACTATTAATAACATTAGTTCCTTAGTATCTTCCTTATG
AAACACCAATAAGCTGCCAATTCTCGCACCCACATTCTCCCTTTACATGA
AAATTGTTTGAGTATGAATTTTCCAGCAGGGTCAAATTACGCTATGTCTT
AATTAATTGTATTGACAGGCTATAGAATATAGACATTTTAACCCCTAGTA
AACTTGAACCACATGTCCTTGCTTGTTTGTTTTGGATTAgtttaggcttc
tgctcatcctctaacGAAAGAATTTCTTGTAAGGAGTACAGTTGACTGGA
ACTCGAAGGGGAAGAATTTCTTGTAAGGAGTACAGTTGACTCGAACTCGA
AGGGGAATTCAATTTGTACGAATAACGGAGAATTGTTTAGAAATTAAAGA
AAGCGTTTTAAGAGGAATCCTCTTTGACAGAGACTGataattagttcgaa
ttatagaaaaattggAATATTAGAAGTTCGAAATTTACGAGATTTAACTG
CATATCTATAGAATTCTGAAAATTAGATTAGGGTTGATTGCTTATTGGCA
TGCTAACATATTTTTCCAGGTGAATTGGATCGGTCAGTATCCTCTGGCCA
TGAACAAACATCAGAGATCTCTTTAAGTAGTGTAGGATTACCACCACACC
CTATGTTTTAAGTTTGACTATCATTCACTAATCCTGAACCGACTTTTTAC
TATTTCTCTTTACTTTGGTTACAGGTGAATTGGATCGATCAGTATCATCT
GGCTATGAACAAACATCAGAAATCGAGATGCCTCACATACATCCCCATTA
TGAAATGCCAATCTCTTTGAACAATGATATCGCACTGGTTAAATTAAAAA
GACCTTTCAAATTCAACCGGTTCGTTCAACCAGTTTGTATTCCTCAGCAA
CACGAAGAAATTGCACCTGGATCCAAGTGCATCCTGTCAGGTGAAATATT
GCGTCTGCATTTTTAGGCTACACGTAtcctttttgatcagtttgatatAT
TTTTAACTCTCGGAtaggaattttatacacgatacgcatgacgcatcccc
tatatcaaaacatatcagctGGGATACGTTCAGTCTACTGAATTAAAAAA
ACGGAGTTTTCAGATTATACAGGTTAAGACCATTTCTCGAAACAAAATGC
ATCAATTAAGGTTTGTTTTAGGGTTTTCAACAGTTTTGAACAGTAGATTA
GCTTATACCATAGACATATGATCATTATCATATGTCTATGCTTATACTTA
CCTCACTTATCATCCTTTTGGTCTATTACGTTCTTATGTGTTTTGCTTTA
CATtgaagtgacgtcattttttttgaaaaagtaataaataaCTTGAAGTA
ACGTCGATTTCTCCACGATGatcctgggggggggggtatttgTAAAAAGT
TACAGACTGAACAGTGTTAAGACCGTCTTATTCATTTCGGACCAACACGA
AACTGTAAATTATTTTACATGGTTTGAGAGGTTTTAATCCAGTGTTCTTG
TTTAACTGGAGAAATTTTACAGAAAGTCCTAGGTCAAaactcataatttt
ttcttttttaggttgGGGTAGAACAAAGAAGGACGGTGAGTCACCAAATG
TTTTAAAGTATACAAAGCTGTATGTGGTAAACCAAACACAATGCGTGGCG
TGGAATCGACGAATCACTAACTATATGATGTGTGGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001918XLOC_001918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003441-exon-sc0000028-1491911889:558045..558095TCONS_00003441-exon-sc0000028-1491911889:558045..558095Clytia hemisphaericaexon
TCONS_00003441-exon-sc0000028-1510915933:558045..558095TCONS_00003441-exon-sc0000028-1510915933:558045..558095Clytia hemisphaericaexon
TCONS_00003441-exon-sc0000028-1575043694:558045..558095TCONS_00003441-exon-sc0000028-1575043694:558045..558095Clytia hemisphaericaexon
TCONS_00003441-exon-sc0000028-1491911889:558667..558870TCONS_00003441-exon-sc0000028-1491911889:558667..558870Clytia hemisphaericaexon
TCONS_00003441-exon-sc0000028-1510915933:558667..558870TCONS_00003441-exon-sc0000028-1510915933:558667..558870Clytia hemisphaericaexon
TCONS_00003441-exon-sc0000028-1575043694:558667..558870TCONS_00003441-exon-sc0000028-1575043694:558667..558870Clytia hemisphaericaexon
TCONS_00003441-exon-sc0000028-1491911889:559719..559934TCONS_00003441-exon-sc0000028-1491911889:559719..559934Clytia hemisphaericaexon
TCONS_00003441-exon-sc0000028-1510915933:559719..559934TCONS_00003441-exon-sc0000028-1510915933:559719..559934Clytia hemisphaericaexon
TCONS_00003441-exon-sc0000028-1575043694:559719..559934TCONS_00003441-exon-sc0000028-1575043694:559719..559934Clytia hemisphaericaexon
TCONS_00003441-exon-sc0000028-1491911889:560556..560682TCONS_00003441-exon-sc0000028-1491911889:560556..560682Clytia hemisphaericaexon
TCONS_00003441-exon-sc0000028-1510915933:560556..560682TCONS_00003441-exon-sc0000028-1510915933:560556..560682Clytia hemisphaericaexon
TCONS_00003441-exon-sc0000028-1575043694:560556..560682TCONS_00003441-exon-sc0000028-1575043694:560556..560682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:558045..560682 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.101028	0.0614958	0.0971896	0	0	0.0384273	0.0475984	0.184801	0.0607403	0	0	0	0	0	0	0	0	0	0	1.00806	0	0	0	0.125057	0.200196	0	0.0515674
Blast
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BLAST of TCONS_00003441 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 4.200e-35
Identity = 67/187 (35.83%), Postives = 112/187 (59.89%), Query Frame = 3 
Query:   57 CQLPDV-----AVSRIISGRDAKPGQFPWQVAMY-VNGHFSCGGSILKPDWLITAAHCLQGLQPSHNITFVAGELDRSVSSGYEQTSEIEMPHIHPHYEMPISLNNDIALVKLKRPFKFNRFVQPVCIPQQHEEIAPGSKCILSGWGRTKKDG-ESPNVLKYTKLYVVNQTQC-VAWNRRITNYMMC 593
            C +P +      +SRI++G DA PG +PWQV++    G   CGGS++  DW++TAAHC  G++ S  +  VAGE D+       Q  +I     +P + + +++NNDI L+KL  P +F++ V  VC+P   ++   G+ C  +GWG+TK +  ++P+ L+   L +++  +C  +W RRIT+ M+C
Sbjct:   19 CGVPAIHPVLSGLSRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC--GVRTSDVV--VAGEFDQGSDEENIQVLKIAKVFKNPKFSI-LTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMIC 200
The following BLAST results are available for this feature:
BLAST of TCONS_00003441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB14.200e-3535.83Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 S... [more]
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