Overview
Position
The following features are aligned
Analyses
This transcript is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00003433 vs. Swiss-Prot (Human)
Match: GBB4 (Guanine nucleotide-binding protein subunit beta-4 OS=Homo sapiens GN=GNB4 PE=1 SV=3) HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0 Identity = 280/341 (82.11%), Postives = 309/341 (90.62%), Query Frame = 1 Query: 370 MSDLDALRQEAENLKNQIRDARKVAQDTNFASAAANVEAINRIQLRTRRTLRGHLAKIYAMHWASDSRSLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAQSGNYVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDSQILTSSGDTTCCLWDIETGQQLTSFIGHTGDVMSISLCNDDNRTFVSGACDASAKVWDIRTGMCTQTFTGHESDINAVSYFPSNSAFGTGSDDATCRLFDIRSDQEMMCYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNAWDTLKGERAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRVWN 1392 MS+L+ LRQEAE L+NQI+DARK D +N++++ RIQ+RTRRTLRGHLAKIYAMHW DSR LVSASQDGKLI+WDSYTTNK+HAIPLRSSWVMTCAYA SGNYVACGGLDNICSIY+LKTREGNVRVSRELPGHTGYLSCCRFLDDSQI+TSSGDTTC LWDIET QQ T+F GH+GDVMS+SL + D RTFVSGACDAS+K+WDIR GMC Q+FTGH SDINAVS+FP+ AF TGSDDATCRLFD+R+DQE++ YSHDNIICGITSVAFSKSGRLLLAGYDDFNCN WDTLKG+RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLR+WN Sbjct: 1 MSELEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTFTGHSGDVMSLSL-SPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340 The following BLAST results are available for this feature:
BLAST of TCONS_00003433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
Genome Browser
External references for this transcript
Relationships
This transcript is a part of the following gene feature(s):
Sequences
The following sequences are available for this feature:
transcript sequence >TCONS_00003433 ID=TCONS_00003433|Name=TCONS_00003433|organism=Clytia hemisphaerica|type=transcript|length=2698bpRun BLAST on NCBI protein sequence of TCONS_00003433-protein >TCONS_00003433-protein ID=TCONS_00003433-protein|Name=TCONS_00003433-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp MSDLDALRQEAENLKNQIRDARKVAQDTNFASAAANVEAINRIQLRTRRTRun BLAST on NCBI transcript from alignment at sc0000028:520312..528285+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003433 ID=TCONS_00003433|Name=TCONS_00003433|organism=Clytia hemisphaerica|type=transcript|length=7974bp|location=Sequence derived from alignment at sc0000028:520312..528285+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:520312..528285+ >TCONS_00003433 ID=TCONS_00003433|Name=TCONS_00003433|organism=Clytia hemisphaerica|type=CDS|length=11286bp|location=Sequence derived from alignment at sc0000028:520312..528285+ (Clytia hemisphaerica) |