TCONS_00003422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003422
Unique NameTCONS_00003422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003422 ID=TCONS_00003422|Name=TCONS_00003422|organism=Clytia hemisphaerica|type=transcript|length=1515bp
CTTGGGCTGTATGGCAAAAGTCATTGCGCCAAAAAGAATTGCTGACTCAg
cgcaaagaaaaaaacacacaaagaaaaaagAGACGGCCGAGACCGACAAA
AGAGCCACTCCCACCAGCATCGGTGATGTCATTAAAGGATATGGTTTCTC
AATTCCGAAGAGTGCTAAGAACACAAAAATCTTTTGGTCTGAAACCAAGT
CAACGGGTTGTGAACAACGTTAGTGAGATGATGGCAGCCGGTATTCCCGA
CATTTTATCGGGATTCGCTATTTCGACGCACGTCAACATACCATTACGTC
ATCGATCAACTATCGAGCTTGATAAATACGAGgtagtttatttatttcat
ctAGTAAAACTTCCACCCCATCATATTAGGAAATTTTNGCCTTTTTGCGT
GGTTCTGGTGTCAGTTTAAAGTCCGGACGTTTTACCGCTCCAACAACTGC
GGTTTACTCGTTCCACGGAACTGTTCATATTTCATTACCGAAAGGAATGA
AAGAGTTTGCGCGGAAGGATTTTGTGACAGCTAGTATTTGTATTGACGCC
CAATGTAAAAAACACATGTCAATCAGTTCGACATCAGGACTTCGTAGTAA
CAGTCgaatattttctttgaatgtCAGTGGTTACATGTATCTTGAGGCCA
ATCGTTTCGTGTCAGTGTTTATCCACAACCAATCGCAGCGTTACAACATC
AATATCATTCGAGGCTCCTACTTTTCTGGTATGTTAGTCGGAACATAACT
CCAATTTGATTGGGAAAATTTGTTCGAGAATTTCTAACAAGTATTAGCAA
ATTGTAAATCAATGTTTCGTAACAATTGAATGAAATGTCGGGTGTCTACT
TTTTACggaaaaaaagaagatattGTTTGGAGCTCAACCATCAAGCACAA
CCCTCGCAACAATGACAAATATAATTGCATTTGGAGCTTTTCGTTTTGGC
CAGTAATCTTGGCGTATCTCCACACGTTTCAGTACCCATTTGGCGACGAT
GTAAAATCCAAtcaatattatttaaaaatttaagatttattATTATATTC
CGTTATATTTAGCCTCCATCATCTTTATCAACCCTTACTCATTTTGTATC
CATTATCATCCAAGTCTAAGTTCCAAGCTTTGAATTTAAAGTTTCCCAAA
GTCCTTTTTCAAATGTAGTTCCATATTGAGAGTCTCAATCTTCGATAGGT
CTTCAGTTGCGCATTTTAACTGACAAACGTTGAAACATAAATCTTTTTCA
acgagaaaaataaaattttaccttcttttgtttttgattttttgttgact
ttttgtCAATTTGTGTTCGAGTGCATCAATAAACATTTTCAACctgtaaa
aaattaaattgacatTCTAgactaaaatttaatttttatggtGTGTTGCA
ACGGACGGGGGAGGAGTTTAATTAGaatttttatgagatttttaacCAAA
TTTATTAAGACGAAGTTGTACATTTTAAAGCTTAATCTACATAATTAGAT
GTTATACATTTCAAA
Run BLAST on NCBI

transcript from alignment at sc0000028:384909..388424+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003422 ID=TCONS_00003422|Name=TCONS_00003422|organism=Clytia hemisphaerica|type=transcript|length=3516bp|location=Sequence derived from alignment at sc0000028:384909..388424+ (Clytia hemisphaerica)
CTTGGGCTGTATGGCAAAAGTCATTGCGCCAAAAAGAATTGCTGACTCAg
cgcaaagaaaaaaacacacaaagaaaaaaggtaaaataaatTGATTAACT
GAAATAGTGCTCCTACatgttttttgtaagaacaaactgcATAAGAACTT
ATATGGTTACAATTggcaaaatcttaagaacaagttaagaacattttaag
actttgcagACTAAAGTAtcaaatttcttagaaaaatactcacataattt
tgaaaataagagcatgttaagaaagcttttaggcttaaaactgaaaaagt
taagaacatagaATTtagatgttctcataaaaaacgtaTACATCCAAAAC
AAATGAGGCTTTTTGCCTCGGTTGTTCCACCAGTAAGATTTAGGTGTGTT
TTTCCCTTTGCAAACACATCATATAAAGGTCTAAAGAAGAATTCAACTAA
ACTACATGCATTTTCATAGGCTCCAAAGAGACGGCCGAGACCGACAAAAG
AGCCACTCCCACCAGCATCGGTGATGTCATTAAAGGATATGGTTTCTCAA
TTCCGAAGAGTGCTAAGAACACAAAAATCTTGTAAGTATCCCCACAAGGT
TACCCATCTCTGTCTGTCGTCTGTGTGCCCTTTagactagactggagtcg
tttataatgcgtataatacagtagtataggcgttatatgataatacagtt
attgttacgggattactttttgctttatttctactatgtctgaattagtc
gtctagcttgctagactaccttTAGCATTGTTGGAATAGTCGGATGATGC
TAAACCTATGTTGTGTAGGGGTCTGCTGAAGGTGGGTGTGTTACTTTGCG
CCTTTGGTAGTATACAGAGGTTtccagtagcgtagccaagggGTTCGATT
TGCTTAAGGGATCGCCCCTACGGATTTGGAAAAACTCTATAGCCGAGAAA
TTCGGACGGGTACAATTTCAAAATGCGATTTGCCATTGATGCAAAAATGA
TGCTCCTATGCTGAGACATTAAATTACTTTACAACTTTCTTCCCTTCTAG
TTGGTCTGAAACCAAGTCAACGGGTTGTGAACAACGTTAGTGAGATGATG
GCAGCCGGTATTCCCGACATTTTATCGGGATTCGCTATTTCGACGCACGT
CAACATACCATTACGTCATCGATCAACTATCGAGCTTGATAAATACGAGg
tagtttatttatttcatctAGTAAAACTTCCACCCCATCATATTAGGAAA
TTTTNGCCTTTTTGCGTGGTTCTGGTGTCAGTTTAAAGTCCGGACGTTTT
ACCGCTCCAACAACTGCGGTTTACTCGTTCCACGGAACTGTTCATATTTC
ATTACCGAAAGGAATGAAAGAGTTTGCGCGGAAGGATTTTGTGACAGCTA
GTATTTGTATTGACGCCCAATGTAAAAAACACATGTAAGTTTTTTTTACG
AAAGTTTTCTTTACCGAGAGCACAACACTTTGCCTTTCTCTGAAATTCAA
CATGTGGCCCTTGGTCCTTTCCTTTTTCCTTGCCTTCTTTAAATTTCCAT
CTCCTGAAACTATTCTACCAAAGAACTATGATGGACACTATATGAACTTC
CCAATCTCATGAAGCTTTTGCCGTCTCTTTTGGATAAGATTCCACTGAAT
TTTCCGGGTTAGCCGACTGAAGACCGTAGAGTTTTCTAGAGTAATGGAAA
AAAGGTTGTGCTGAGTTAGAAAACTGGCTAACTTTTTCATCAAGCTTATT
TTCCAATCCAGGATCCTGGACTTTTTTCCGCTAGAGAGAGGCAGTGGAAT
CTTAGTCCAAAAAGTTGAATCTTACACGAAGTGACAGTGCCCATCCTATG
AAGCGTCAAGGTTAAAAAAGCTAAGGAAGGTAATATTTGCTTCTTCATGT
ATAGGTCAATCAGTTCGACATCAGGACTTCGTAGTAACAGTCgaatattt
tctttgaatgtCAGTGGTTACATGTATCTTGAGGTAGGtcaaaattcagt
ttttcctCTCACTCTCACTCTCTTTCAGAATACGGAAAGTCGTTGTTATT
TAGTACGCCAAATTACATGGTCCAtcccattgacttccaagcccgaagca
CTAGACTCGAGACTCGTGGATgtgaaatgaaaccacttaacTTATTTCTC
TTCCAGAACGcctgcgcgtggtttttacacaaacgccggattgaaagtaa
aatctatcgctagatttcaaaaaatgcagtcctcaaaaaccactagatac
aatccgtcgtgaTTATTATGgtgcgttctaggcgcgttctggatgggaaa
taagtggcttcactttttgttGCCAgcgaaaggttagagattctagatct
agcccttcgggctttaaactcaatggtccaCCCTCTCTCTTTTGAGTTCT
GCAAAGAATGAATTATTAATCAAATGTTATTTTAATTTATGCATATTGAT
TTTATCTAACTTgctttacaaaatattttaaaatctaaaCGAATTATTTA
ACGGTTTTGTCTAACTTTAAatctatcaaaattattttgaaattgaaatt
aaatttaatgACACTTTTGTCTAACTTCAAATCTattacaaaatatattt
ttagttgATATTCAATTTAATGACATTATATTTACATTTAATGACAGGCC
AATCGTTTCGTGTCAGTGTTTATCCACAACCAATCGCAGCGTTACAACAT
CAATATCATTCGAGGCTCCTACTTTTCTGGTATGTTAGTCGGAACATAAC
TCCAATTTGATTGGGAAAATTTGTTCGAGAATTTCTAACAAGTATTAGCA
AATTGTAAATCAATGTTTCGTAACAATTGAATGAAATGTCGGGTGTCTAC
TTTTTACggaaaaaaagaagatattGTTTGGAGCTCAACCATCAAGCACA
ACCCTCGCAACAATGACAAATATAATTGCATTTGGAGCTTTTCGTTTTGG
CCAGTAATCTTGGCGTATCTCCACACGTTTCAGTACCCATTTGGCGACGA
TGTAAAATCCAAtcaatattatttaaaaatttaagatttattATTATATT
CCGTTATATTTAGCCTCCATCATCTTTATCAACCCTTACTCATTTTGTAT
CCATTATCATCCAAGTCTAAGTTCCAAGCTTTGAATTTAAAGTTTCCCAA
AGTCCTTTTTCAAATGTAGTTCCATATTGAGAGTCTCAATCTTCGATAGG
TCTTCAGTTGCGCATTTTAACTGACAAACGTTGAAACATAAATCTTTTTC
Aacgagaaaaataaaattttaccttcttttgtttttgattttttgttgac
tttttgtCAATTTGTGTTCGAGTGCATCAATAAACATTTTCAACctgtaa
aaaattaaattgacatTCTAgactaaaatttaatttttatggtGTGTTGC
AACGGACGGGGGAGGAGTTTAATTAGaatttttatgagatttttaacCAA
ATTTATTAAGACGAAGTTGTACATTTTAAAGCTTAATCTACATAATTAGA
TGTTATACATTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001912XLOC_001912Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003422-exon-sc0000028-1491911889:384909..384988TCONS_00003422-exon-sc0000028-1491911889:384909..384988Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1510915933:384909..384988TCONS_00003422-exon-sc0000028-1510915933:384909..384988Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1575043694:384909..384988TCONS_00003422-exon-sc0000028-1575043694:384909..384988Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1491911889:385387..385489TCONS_00003422-exon-sc0000028-1491911889:385387..385489Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1510915933:385387..385489TCONS_00003422-exon-sc0000028-1510915933:385387..385489Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1575043694:385387..385489TCONS_00003422-exon-sc0000028-1575043694:385387..385489Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1491911889:385959..386342TCONS_00003422-exon-sc0000028-1491911889:385959..386342Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1510915933:385959..386342TCONS_00003422-exon-sc0000028-1510915933:385959..386342Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1575043694:385959..386342TCONS_00003422-exon-sc0000028-1575043694:385959..386342Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1491911889:386813..386891TCONS_00003422-exon-sc0000028-1491911889:386813..386891Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1510915933:386813..386891TCONS_00003422-exon-sc0000028-1510915933:386813..386891Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1575043694:386813..386891TCONS_00003422-exon-sc0000028-1575043694:386813..386891Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1491911889:387556..388424TCONS_00003422-exon-sc0000028-1491911889:387556..388424Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1510915933:387556..388424TCONS_00003422-exon-sc0000028-1510915933:387556..388424Clytia hemisphaericaexon
TCONS_00003422-exon-sc0000028-1575043694:387556..388424TCONS_00003422-exon-sc0000028-1575043694:387556..388424Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:384909..388424 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0960345	0	0	0	0.131398	0	0.0388641	0	0.0502709	0	0.0349292	0.0273277	0	0.101337	0	0	0	0	0.15109	0	0	0	0	0	0	0	0.0444383	0	0
Blast
[Close]
BLAST of TCONS_00003422 vs. Swiss-Prot (Human)
Match: ADIPL (Adipolin OS=Homo sapiens GN=C1QTNF12 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.069e-21
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 2 
Query:  389 AFLRGSGVSLKSGRFTAPTTAVYSFHGTVHI--SLPKGMKEFARKDFVTASICIDAQCKKHMSISSTSGLRSNSRIFSLNVSGYMYLEANRFVSVFIHNQSQRYNINIIRGSYFSGMLVGT 745
            AFLRGSG+SL SGRFTAP + ++ F  ++H+  S  +G      +D V   ICI++ C++H  + + SGL SNSR+F+L V G + L+A ++ SVF+ N S    + I  GS FSG+L+GT
Sbjct:  183 AFLRGSGLSLASGRFTAPVSGIFQFSASLHVDHSELQGKARLRARDVVCVLICIESLCQRHTCLEAVSGLESNSRVFTLQVQGLLQLQAGQYASVFVDNGSGAV-LTIQAGSSFSGLLLGT 302
The following BLAST results are available for this feature:
BLAST of TCONS_00003422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADIPL1.069e-2144.63Adipolin OS=Homo sapiens GN=C1QTNF12 PE=1 SV=2[more]
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