TCONS_00003420 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003420
Unique Name	TCONS_00003420
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1753

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000028:376913..388424+
coding sequence from alignment at sc0000028:376913..388424+

transcript sequence

>TCONS_00003420 ID=TCONS_00003420|Name=TCONS_00003420|organism=Clytia hemisphaerica|type=transcript|length=1753bp
cataaaaacatgaaacAAAACACCATGAGGATAACCATGATGTTATATTT
CTTCCTTGGATGTATAGAATGCAACAAATACTTAGAGCTGGACAAGAAGA
CACAGAGCCAAGTCATGAAACTCGGACAGCAAATTTTCGGACAACATTCG
AACAGAAAAACGACTGGTGTGGCAGTTCCACAACAACCCCGTGAAAGACC
ACCTAAAAAGAAACTGGACCCGAAGGAAACTTGGGCTGTATGGCAAAAGT
CATTGCGCCAAAAAGAATTGCTGACTCAgcgcaaagaaaaaaacacacaa
agaaaaaagGCTCCAAAGAGACGGCCGAGACCGACAAAAGAGCCACTCCC
ACCAGCATCGGTGATGTCATTAAAGGATATGGTTTCTCAATTCCGAAGAG
TGCTAAGAACACAAAAATCTTTTGGTCTGAAACCAAGTCAACGGGTTGTG
AACAACGTTAGTGAGATGATGGCAGCCGGTATTCCCGACATTTTATCGGG
ATTCGCTATTTCGACGCACGTCAACATACCATTACGTCATCGATCAACTA
TCGAGCTTGATAAATACGAGgtagtttatttatttcatctAGTAAAACTT
CCACCCCATCATATTAGGAAATTTTNGCCTTTTTGCGTGGTTCTGGTGTC
AGTTTAAAGTCCGGACGTTTTACCGCTCCAACAACTGCGGTTTACTCGTT
CCACGGAACTGTTCATATTTCATTACCGAAAGGAATGAAAGAGTTTGCGC
GGAAGGATTTTGTGACAGCTAGTATTTGTATTGACGCCCAATGTAAAAAA
CACATGTCAATCAGTTCGACATCAGGACTTCGTAGTAACAGTCgaatatt
ttctttgaatgtCAGTGGTTACATGTATCTTGAGGCCAATCGTTTCGTGT
CAGTGTTTATCCACAACCAATCGCAGCGTTACAACATCAATATCATTCGA
GGCTCCTACTTTTCTGGTATGTTAGTCGGAACATAACTCCAATTTGATTG
GGAAAATTTGTTCGAGAATTTCTAACAAGTATTAGCAAATTGTAAATCAA
TGTTTCGTAACAATTGAATGAAATGTCGGGTGTCTACTTTTTACggaaaa
aaagaagatattGTTTGGAGCTCAACCATCAAGCACAACCCTCGCAACAA
TGACAAATATAATTGCATTTGGAGCTTTTCGTTTTGGCCAGTAATCTTGG
CGTATCTCCACACGTTTCAGTACCCATTTGGCGACGATGTAAAATCCAAt
caatattatttaaaaatttaagatttattATTATATTCCGTTATATTTAG
CCTCCATCATCTTTATCAACCCTTACTCATTTTGTATCCATTATCATCCA
AGTCTAAGTTCCAAGCTTTGAATTTAAAGTTTCCCAAAGTCCTTTTTCAA
ATGTAGTTCCATATTGAGAGTCTCAATCTTCGATAGGTCTTCAGTTGCGC
ATTTTAACTGACAAACGTTGAAACATAAATCTTTTTCAacgagaaaaata
aaattttaccttcttttgtttttgattttttgttgactttttgtCAATTT
GTGTTCGAGTGCATCAATAAACATTTTCAACctgtaaaaaattaaattga
catTCTAgactaaaatttaatttttatggtGTGTTGCAACGGACGGGGGA
GGAGTTTAATTAGaatttttatgagatttttaacCAAATTTATTAAGACG
AAGTTGTACATTTTAAAGCTTAATCTACATAATTAGATGTTATACATTTC
AAA

Run BLAST on NCBI

protein sequence of TCONS_00003420-protein

>TCONS_00003420-protein ID=TCONS_00003420-protein|Name=TCONS_00003420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
HKNMKQNTMRITMMLYFFLGCIECNKYLELDKKTQSQVMKLGQQIFGQHS
NRKTTGVAVPQQPRERPPKKKLDPKETWAVWQKSLRQKELLTQRKEKNTQ
RKKAPKRRPRPTKEPLPPASVMSLKDMVSQFRRVLRTQKSFGLKPSQRVV
NNVSEMMAAGIPDILSGFAISTHVNIPLRHRSTIELDKYEVVYLFHLVKL
PPHHIRKFXPFCVVLVSV

Run BLAST on NCBI

transcript from alignment at sc0000028:376913..388424+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003420 ID=TCONS_00003420|Name=TCONS_00003420|organism=Clytia hemisphaerica|type=transcript|length=11512bp|location=Sequence derived from alignment at sc0000028:376913..388424+ (Clytia hemisphaerica)
cataaaaacatgaaacAAAACACCATGAGGATAACCATGATGTTATATTT
CTTCCTTGGATGTATAGAATGCAACAAATACTTAGAGCTGGACAAGAAGA
CACAGAGCCAAGTCATGAAACTCGGACAGCAAATTTTCGGACAACATTCG
AACAGAAAAACGACTGtaagttttggtatttttgtttgaaatcgaGTTAT
GACTTTTTCACGAGTTAAAAAGAGATCTGATTCATATTTTTGcggtccca
gctggcacacaacgttgtttcaacgttcatccaacgttatatggacgttg
tgaacgttagaaaaacgttaaaacaacatcaatctcgttccctgcgtata
aTTGCCTTCTTACTGCTTACGGATATCGCCAGATAATtatctggcgtcca
tcagtaactTAAGTTTgagatacacggggacgaggttagCTAGCACAATA
TAGTATCAGTGGTAAAACAAGACTATTATTAGTTAGATGTCCATAAAAAT
GCAATGGTCATATACTGTCAGTTCCTGTCGTTCATTTATTTCCTCACGCC
TTAAACATtaacgagtttatgtatttgtacTTTTGGGGACGGCggagcaa
attttttttccgtagacgggcggaaatatctttaatggtcggaaatatca
tagcgtaatggtcggaaatatcatagcgtaatggtcggaaatatcttttg
atggtcggaaatatccaaaactctgaaaatttgaaaatttaatggtcaga
aatatcatttgatggtcggaaatatcatttgatggtcggaagtatctttt
gatggtcggaaatatcatttgatggtcggaaatattcaaagctctaaaaa
tttgaaaacttaatggtcggaaatatcccgcgcttttaaaaatgcttcat
cagcaaaaaaatgtaaacaaagatggtagcaaagTTGGTGTTGTGTGgcc
aacttgttgtgtgtgccagACGGTTGGCAAtagatatcatactccaggat
gcaagtgaaaNTCGTGTCTCGTTGACGCAAGCGGTTAGGTGTTGGGTTTG
TAAatcaaggttgcttgcatttggtggttcgagccggggtgcatcctgga
gtatgatattgTTTGCCAACCGTGCCAGACAAGCTTTTTAGGGAGAGAAA
GTGGTATTGaactttttattcaaacaaTACTTTTCGTTCtttattgtctt
ttttatatcctttcctcctctaGCCCCCACTGTAAGGGTCATTTGTTGGC
CAAATTTTCACTGCATGCACTGCCAGctggatgcactgtaagggttcgat
TTTGGACGCCAAATTTTCCGCCGAACGTATGGTcattttcagatcgagtg
ccccccgggTAAGGTCTAGAATGGGAGGGTGTCCATAGGTAGGGTTGGGA
CTAGCTTTAGGGTGATTTGAGAGTAGTGGGGGCtagaggaggaaaggata
taaaaaagacaagaaagaaagaagagtcgtgtttgaataaaaagtttatt
accACTTTCTCTCCCTAAAAAGCTGTCTATGTCTTGTGTAAAGTACTGTA
TAAAGAACTAAGAAACAGAACAGTTCTCAGATAGtgtcccaaaaacttaa
aataaaaaactactctggcacacacaacaccaatgacccaataccccctg
aatcACGGAATGATGGATAGGaaaattatcggggaaaaaaattgctCGTC
GCGCTCTGAGCAATCAGCGAAATCTCAACAAcacctttgctaccatcttt
gtttacatttttttgctgatgaagaatttttaaaagcgcgggatatttcc
gaccattacgctatgatatttccgaccatcaaaagatatttccgaccatc
aaatgatatttctgaccattacattttcaaattttcagagttttggatat
gtccgaccatcaaaagatatttccgaccatcaaatgatatttctgaccat
tacattttcaaattttcagagttttggatatgtccgaccatcaaaagata
tttccgaccatcaaatgatatttctgaccattacattttcaaattttcag
agttttggatatgtccgaccatcaaaagatatttccgaccatcaaatgat
atttctgaccattacattttcaaattttcagagttttggatatgtccgac
catcaaaagatatttccgaccatcaaatgatatttctgaccattacattt
tcaaattttcagagttttggatatgtccgaccatcaaaagatatttccga
ccatcaaatgatatttctgaccattacattttcaaattttcagagttttg
gatatgtccgaccatcaaaagatatttccgaccatcaaatgatatttctg
accattacattttcaaattttcagagttttggatatgtccgaccatcaaa
agatatttccgaccatcaaatgatatttctgaccattacattttcaaatt
ttcagagttttggatatgtccgaccatcaaaagatatttccgaccatcaa
atgatatttctgaccattacattttcaaattttcagagttttggatatgt
ccgaccatcaaaagatatttccgaccatcaaatgatatttccgaccatta
cgctatgatatttccgaccattaaagatatttccgcccgtctacggaaaa
aaaaacTGCGACggcggagtgactgaagcgatttggaataacctgcagtt
ctgacccgcaaaatcgaggacggtaaaagtgctgattaaccgtcgtcctc
agttgatcatgatctagtcaaattataGAACCTtcccgtctccgtcgcag
aaaataCACATACATAAGCTCGGTATTATTAGCGAGTTCACGTATGGCAC
TTTTTCTGTGACGGAGCGACTAGTTTTTGATTAGTCTATACATACGACTt
ctgaatacaccttttcgaccgtagtcgcgcggtcaggctcGTGCCATtta
attacagttgacgctctctaattcgatcttcaaggggaattggattttca
tcggataagggagcttatcgaatagtagagcgtcgtttatgagagtttct
tgttgactgggactttaaatttcatcgaataagggagcctatcgaatagt
agaacgtcgaattagagaacgtcaactgtatttaattatccccctaaact
cgatccaatccttttttgacacattgtctataggtgcgaaaaaaggactg
ggatggttttagtgggataaagcagacgcggctacggtcgaaaaggtatg
TACGTATAATACGGAAATTCACCCTTTTCGTAAATTTTTGAAACAAGCTG
TTAGTGAAAGTATAAATGTATTAACATTGGATAGAGTTAGAATTAGAtgg
cgattttgtgctcgttgaaaagataatcgcGAGTGGGATATTAGAATGAG
CGAATGTGAAGATGTTCGAAAAGATGAAAATCAACTCCTAGTAGAATCAA
GTgagaaaagaaacttaaactTAAAAGATCATCGAAATGCGAAAATCTTT
AAAGACACCTACCATCAAAAGAtaccttaaatgaaaaaattttggcgcAA
AGAAGATTTGGCGGATTTGCTGAATTTAGCCAATATCTCTCAAATTATTA
AAAGCTCCTACCAAAAATTTCGTCAATTTCTTCCTTGAAGGTATTGCTTT
GAATGTCTGACTGGTTGACCTTTTTTACAGTTTTTTGACCTGCTTTTTAC
AGTTACAGTTTTTTTTTGGACTGCTAAATAAACTAGATTTccatttttgg
aaaatgtcaaaaaatattgataatttgaGGCCCTATAAAGGCATTAAAGA
CCCCTTGTTTTGTCTTTTAAGCTACTATAATTGCCGCCGCAGAGAGCCTA
AAGCGACCGAGGGTGGCATTCATAGCTTTatgcataaggaagttggggga
atcatctcataattttgcgcgcgtttttcagtattttagttccacATAAA
TGGTGTCCCGGTAGCATTTTTATCTtgacggtctctctattgttttatca
tgaTCAAAAAGGATTTTCCAGAGTTAattgatctgattacccattttgaa
agctcagtttgtctttttcttatctctAGAGAATTAACGAACTCCCTTGT
TtgtaccacaagtagttatcaAGCGGTCCGCGTTAAAAAAATCACCTAAC
ACAAAGTATTTGAATagttaaagggacattacagtagtaaaatgtaaata
ttGCGCAAACCacatgtcattaaagagaacaattaaaatcacgtgtccaa
aacaaacttgtaaaacaattgagcaatcaaaattagccatatttggtttg
atNgtttgattttttattttgacatgtgacatttgttttgattttgtatc
tgctgcatacagtttgtttacaaatttcgcaagtactgttatgtcccttt
aagttaCTAAACAAACGTGTACATTATGAGAGCATCCTTAAATACATGGT
TTTTATAGAAAACCAATAAGTTATGGCTCTGACTGGGCGGTTCTGAGTTT
TTCAGACTTAAATGTTCTTGTCATATTAATTAAAATTGGAAATCtatact
tctcagtaatttctgcaATCTGAGGCTccgattgttcttaatttgttctt
aggttttggccaaatctCAGCcttgtatttttatgaaattgttcttataa
aaaaaacgtgtaaggcaAGGTACGGATGTCACTCTATGTACTCTAGGTAG
AAAAACAAAATGGGCTTTACTTTTGAAACTAaaactgtaaatcactccct
tgacacatttgttagcatttgaagactgaattttgtctcagatcagatga
aaaaattactgtagggctaataccattccttttgaaagcaaattcTACTC
TCACAggataaaatcttaaaatcctAGGCCTGAGAAATGGCCATTTTCGG
GGTTGGGATTAGCCCTGGAAAAGTGAAACAACTACAGGCCTGGAAAATGG
CCATTTCCCAGGCCTGTGTTTTCCAAATTTCAGGGTGTAAAGTGACAATT
TCTCAGGAAATCTGTATTACCCAAAATTGAATTAGATTTAATAAATTAGT
AAATGCATTTGATCATTTTGTGAGCATTGGCTCGATAGCTCCCATTAGTC
CTGtcatgtacttgcgctactttgagaatcccggcacttttgtcacaaca
gcGGAGCTGCACCTGAGAGCCAACTTATTGACCTCAAACGGTAGATGTTA
TATCGAATGGCCAATCGTCACCTTTTTATATTTCCTatctcttatcctat
ttttctcttttctgactgtctgagactttgttttttattttttattttct
aattatctaattttaagttttgatcCGTCAATCCTATTTCGTCCAATCAA
ATCATCGCATCGTATGGGGTTCGAACCCTcgccaaagaaagaccttcgtt
TTCGGAAGCCAGCACTCTCTCCACTGAGCCATCGCCGCATGCCAGATTCC
GCAATTTGAAAGAACTTATATCAAACGGACAAATCTCTTTATATAGTCCT
ACACAGTCACAGGGTACGAGTGCCCCTATGAGAACCTTCGGTCCtttatt
gtgactctcgagctccaaccctaaccttAACTGAtgataaccgaaccccc
gtcttcCAGGGTGACTTTTAGCGATGCGCGGATGAGAAAATAAATaaggt
gacttttggccatccGATCTAAGAGCATCCACCTTTGCGCATGCGTAGCT
CAGAAATTCCAAGCCTGGCAAAGACCCATTTTAATTCAGGGTGGGTTTTC
AAATTTCtgatcttttgaaaaataaatcccACCCCGAGAAATCCCAGGCC
TGGATAATGGCCATTTTCGGGGTGGGAAAGTTTGTATAAAAATTTTCCCA
GGCTTGTAAAATGGCCAAAATCACCCctgaaattgaattgaattatgTAA
TCGTTAAAAAGTCTCAGGGCTAAAAAAAATCCCACCCCGAAAATGGCCAT
TTCCCAGGCTtgggattttaagattttttcctgtgtcttgtgttcgtttt
gctgcggtggtactttaatgaaaattatggctagtatttagtatccaaaa
atgtaaaaacaccTCATTTTTGGGAAGTAACACATGACAATAGTTTTGTT
GAACAAGTTTCTTGTGTCAATCTTTTGATAACTAAATCACCGAAACATTA
AACTGTTACTACTTCATTAATCATGTGATCGAATTTTCGTTGCGATTATT
TACACTTCAAAGCCATACATTTTACGAAAAGAAGGTTTTATCTTATAACC
AGgtagacaaatcactatctaaaaaataagcccaaagccgaagaaaattc
gtaAACGGGTTTtttcccgtataccgccataacgccatattttcccgcca
tTGCTATCATtgaaacggacgataacatcgtctaataACCAGGTAATTTT
TCccaagaaaaaacaattactGAAATATTAAAGagctagtctgaatcgca
gacctcagatagtataggtctgcttaatgatctgtCAACCATACGGGGCG
TTGAATAGGTcaattcccagctggcacacaacgttctttcaacgtcaatt
taatgttcacaacgtccatttaacgttagatgaacgttgagacaacgttg
tgtgtcatcTGGGTTGAAACATTTCATCCATAGGGTGTGGCAGTTCCACA
ACAACCCCGTGAAAGACCACCTAAAAAGAAACTGGACCCGAAGGAAACTT
GGGCTGTATGGCAAAAGTCATTGCGCCAAAAAGAATTGCTGACTCAgcgc
aaagaaaaaaacacacaaagaaaaaaggtaaaataaatTGATTAACTGAA
ATAGTGCTCCTACatgttttttgtaagaacaaactgcATAAGAACTTATA
TGGTTACAATTggcaaaatcttaagaacaagttaagaacattttaagact
ttgcagACTAAAGTAtcaaatttcttagaaaaatactcacataattttga
aaataagagcatgttaagaaagcttttaggcttaaaactgaaaaagttaa
gaacatagaATTtagatgttctcataaaaaacgtaTACATCCAAAACAAA
TGAGGCTTTTTGCCTCGGTTGTTCCACCAGTAAGATTTAGGTGTGTTTTT
CCCTTTGCAAACACATCATATAAAGGTCTAAAGAAGAATTCAACTAAACT
ACATGCATTTTCATAGGCTCCAAAGAGACGGCCGAGACCGACAAAAGAGC
CACTCCCACCAGCATCGGTGATGTCATTAAAGGATATGGTTTCTCAATTC
CGAAGAGTGCTAAGAACACAAAAATCTTGTAAGTATCCCCACAAGGTTAC
CCATCTCTGTCNttttgctgcactgtaagggtgcaattttaaaagccaat
ttttggcccgcacataccgtcagtccgcaaacccagtgcccccccccccg
ggttagaCGGGCAGAAAGTTGGATGTCTAAAATCAATGCATTTCTTCTTC
ATCTcccttttttgacgtcaatgcttctttcaatcttttgtaAGCTAACA
ATTTAATAGGCAACCTTCTACCCACTCATTACCACCtttaacaattagaa
tagacagggcagaaagtcggtcGTCTATTTCATTTGAGGAGTGATATTCA
GTATCAGTGGTAGTAAGCCAATCAAGAAAGTCAAGAATTTCCTAGCTTTG
AAAAGATTCGGAAAAACTACGTGAGAAGGGGTTGGACCACATTTCGCACT
AAACTACACTTCGTATTTATTCATTAAATAGTTCTTAAAGAAAATGGACC
CATCTACATAGTGTTGCGCATAAATCTTCCAGATTTCTGTCATCCCCTCA
CctcttgtacgcagagaacaacaGAAAAGAAACTATAGAGGCCCCTATAG
ACATACGCTTTTTCTAAGCCTTTGCCCTTCCATTCACATTAGCCTAGAAA
AATGAAGCGTTTGAGTTTTCAAGCGTTCTGAAATCATCGAACATTTTATC
CGTATTCAGCAGACCTAGCCTCTcttcaatgttttcattttaNAAACTTG
GGCTGTATGGCAAAAGTCATTGCGCCAAAAAGAATTGCTGACTCAgcgca
aagaaaaaaacacacaaagaaaaaaggtaaaataaatTGATTAACTGAAA
TAGTGCTCCTACatgttttttgtaagaacaaactgcATAAGAACTTATAT
GGTTACAATTggcaaaatcttaagaacaagttaagaacattttaagactt
tgcagACTAAAGTAtcaaatttcttagaaaaatactcacataattttgaa
aataagagcatgttaagaaagcttttaggcttaaaactgaaaaagttaag
aacatagaATTtagatgttctcataaaaaacgtaTACATCCAAAACAAAT
GAGGCTTTTTGCCTCGGTTGTTCCACCAGTAAGATTTAGGTGTGTTTTTC
CCTTTGCAAACACATCATATAAAGGTCTAAAGAAGAATTCAACTAAACTA
CATGCATTTTCATAGGCTCCAAAGAGACGGCCGAGACCGACAAAAGAGCC
ACTCCCACCAGCATCGGTGATGTCATTAAAGGATATGGTTTCTCAATTCC
GAAGAGTGCTAAGAACACAAAAATCTTGTAAGTATCCCCACAAGGTTACC
CATCTCTGTCTGTCGTCTGTGTGCCCTTTagactagactggagtcgttta
taatgcgtataatacagtagtataggcgttatatgataatacagttattg
ttacgggattactttttgctttatttctactatgtctgaattagtcgtct
agcttgctagactaccttTAGCATTGTTGGAATAGTCGGATGATGCTAAA
CCTATGTTGTGTAGGGGTCTGCTGAAGGTGGGTGTGTTACTTTGCGCCTT
TGGTAGTATACAGAGGTTtccagtagcgtagccaagggGTTCGATTTGCT
TAAGGGATCGCCCCTACGGATTTGGAAAAACTCTATAGCCGAGAAATTCG
GACGGGTACAATTTCAAAATGCGATTTGCCATTGATGCAAAAATGATGCT
CCTATGCTGAGACATTAAATTACTTTACAACTTTCTTCCCTTCTAGTTGG
TCTGAAACCAAGTCAACGGGTTGTGAACAACGTTAGTGAGATGATGGCAG
CCGGTATTCCCGACATTTTATCGGGATTCGCTATTTCGACGCACGTCAAC
ATACCATTACGTCATCGATCAACTATCGAGCTTGATAAATACGAGgtagt
ttatttatttcatctAGTAAAACTTCCACCCCATCATATTAGGAAATTTT
NGCCTTTTTGCGTGGTTCTGGTGTCAGTTTAAAGTCCGGACGTTTTACCG
CTCCAACAACTGCGGTTTACTCGTTCCACGGAACTGTTCATATTTCATTA
CCGAAAGGAATGAAAGAGTTTGCGCGGAAGGATTTTGTGACAGCTAGTAT
TTGTATTGACGCCCAATGTAAAAAACACATGTAAGTTTTTTTTACGAAAG
TTTTCTTTACCGAGAGCACAACACTTTGCCTTTCTCTGAAATTCAACATG
TGGCCCTTGGTCCTTTCCTTTTTCCTTGCCTTCTTTAAATTTCCATCTCC
TGAAACTATTCTACCAAAGAACTATGATGGACACTATATGAACTTCCCAA
TCTCATGAAGCTTTTGCCGTCTCTTTTGGATAAGATTCCACTGAATTTTC
CGGGTTAGCCGACTGAAGACCGTAGAGTTTTCTAGAGTAATGGAAAAAAG
GTTGTGCTGAGTTAGAAAACTGGCTAACTTTTTCATCAAGCTTATTTTCC
AATCCAGGATCCTGGACTTTTTTCCGCTAGAGAGAGGCAGTGGAATCTTA
GTCCAAAAAGTTGAATCTTACACGAAGTGACAGTGCCCATCCTATGAAGC
GTCAAGGTTAAAAAAGCTAAGGAAGGTAATATTTGCTTCTTCATGTATAG
GTCAATCAGTTCGACATCAGGACTTCGTAGTAACAGTCgaatattttctt
tgaatgtCAGTGGTTACATGTATCTTGAGGTAGGtcaaaattcagttttt
cctCTCACTCTCACTCTCTTTCAGAATACGGAAAGTCGTTGTTATTTAGT
ACGCCAAATTACATGGTCCAtcccattgacttccaagcccgaagcaCTAG
ACTCGAGACTCGTGGATgtgaaatgaaaccacttaacTTATTTCTCTTCC
AGAACGcctgcgcgtggtttttacacaaacgccggattgaaagtaaaatc
tatcgctagatttcaaaaaatgcagtcctcaaaaaccactagatacaatc
cgtcgtgaTTATTATGgtgcgttctaggcgcgttctggatgggaaataag
tggcttcactttttgttGCCAgcgaaaggttagagattctagatctagcc
cttcgggctttaaactcaatggtccaCCCTCTCTCTTTTGAGTTCTGCAA
AGAATGAATTATTAATCAAATGTTATTTTAATTTATGCATATTGATTTTA
TCTAACTTgctttacaaaatattttaaaatctaaaCGAATTATTTAACGG
TTTTGTCTAACTTTAAatctatcaaaattattttgaaattgaaattaaat
ttaatgACACTTTTGTCTAACTTCAAATCTattacaaaatatatttttag
ttgATATTCAATTTAATGACATTATATTTACATTTAATGACAGGCCAATC
GTTTCGTGTCAGTGTTTATCCACAACCAATCGCAGCGTTACAACATCAAT
ATCATTCGAGGCTCCTACTTTTCTGGTATGTTAGTCGGAACATAACTCCA
ATTTGATTGGGAAAATTTGTTCGAGAATTTCTAACAAGTATTAGCAAATT
GTAAATCAATGTTTCGTAACAATTGAATGAAATGTCGGGTGTCTACTTTT
TACggaaaaaaagaagatattGTTTGGAGCTCAACCATCAAGCACAACCC
TCGCAACAATGACAAATATAATTGCATTTGGAGCTTTTCGTTTTGGCCAG
TAATCTTGGCGTATCTCCACACGTTTCAGTACCCATTTGGCGACGATGTA
AAATCCAAtcaatattatttaaaaatttaagatttattATTATATTCCGT
TATATTTAGCCTCCATCATCTTTATCAACCCTTACTCATTTTGTATCCAT
TATCATCCAAGTCTAAGTTCCAAGCTTTGAATTTAAAGTTTCCCAAAGTC
CTTTTTCAAATGTAGTTCCATATTGAGAGTCTCAATCTTCGATAGGTCTT
CAGTTGCGCATTTTAACTGACAAACGTTGAAACATAAATCTTTTTCAacg
agaaaaataaaattttaccttcttttgtttttgattttttgttgactttt
tgtCAATTTGTGTTCGAGTGCATCAATAAACATTTTCAACctgtaaaaaa
ttaaattgacatTCTAgactaaaatttaatttttatggtGTGTTGCAACG
GACGGGGGAGGAGTTTAATTAGaatttttatgagatttttaacCAAATTT
ATTAAGACGAAGTTGTACATTTTAAAGCTTAATCTACATAATTAGATGTT
ATACATTTCAAA

Coding sequence (CDS) from alignment at sc0000028:376913..388424+

>TCONS_00003420 ID=TCONS_00003420|Name=TCONS_00003420|organism=Clytia hemisphaerica|type=CDS|length=2628bp|location=Sequence derived from alignment at sc0000028:376913..388424+ (Clytia hemisphaerica)
cataaaaacatgaaacAAAACACCATGAGGATAACCATGATGTTATATTT
CTTCCTTGGATGTATAGAATGCAACAAATACTTAGAGCTGGACAAGAAGA
CACAGAGCCAAGTCATGAAACTCGGACAGCAAATTTTCGGACAACATTCG
AACAGAAAAACGACTGGTGTGGCAGTTCCACAACAACCCCGTGAAAGACC
ACCTAAAAAGAAACTGGACCCGAAGGAAACTTGGGCTGTATGGCAAAAGT
CATTGCGCCAAAAAGAATTGCTGACTCAgcgcaaagaaaaaaacacacaa
agaaaaaagGCTCCAAAGAGACGGCCGAGACCGACAAAAGAGCCACTCCC
ACCAGCATCGGTGATGTCATTAAAGGATATGGTTTCTCAATTCCGAAGAG
TGCTAAGAACACAAAAATCTTTTGGTCTGAAACCAAGTCAACGGGTTGTG
AACAACGTTAGTGAGATGATGGCAGCCGGTATTCCCGACATTTTATCGGG
ATTCGCTATTTCGACGCACGTCAACATACCATTACGTCATCGATCAACTA
TCGAGCTTGATAAATACGAGgtagtttatttatttcatctAGTAAAACTT
CCACCCCATCATATTAGGAAATTTTNGCCTTTTTGCGTGGTTCTGGTGTC
AGTTTAAcataaaaacatgaaacAAAACACCATGAGGATAACCATGATGT
TATATTTCTTCCTTGGATGTATAGAATGCAACAAATACTTAGAGCTGGAC
AAGAAGACACAGAGCCAAGTCATGAAACTCGGACAGCAAATTTTCGGACA
ACATTCGAACAGAAAAACGACTGGTGTGGCAGTTCCACAACAACCCCGTG
AAAGACCACCTAAAAAGAAACTGGACCCGAAGGAAACTTGGGCTGTATGG
CAAAAGTCATTGCGCCAAAAAGAATTGCTGACTCAgcgcaaagaaaaaaa
cacacaaagaaaaaagGCTCCAAAGAGACGGCCGAGACCGACAAAAGAGC
CACTCCCACCAGCATCGGTGATGTCATTAAAGGATATGGTTTCTCAATTC
CGAAGAGTGCTAAGAACACAAAAATCTTTTGGTCTGAAACCAAGTCAACG
GGTTGTGAACAACGTTAGTGAGATGATGGCAGCCGGTATTCCCGACATTT
TATCGGGATTCGCTATTTCGACGCACGTCAACATACCATTACGTCATCGA
TCAACTATCGAGCTTGATAAATACGAGgtagtttatttatttcatctAGT
AAAACTTCCACCCCATCATATTAGGAAATTTTNGCCTTTTTGCGTGGTTC
TGGTGTCAGTTTAAcataaaaacatgaaacAAAACACCATGAGGATAACC
ATGATGTTATATTTCTTCCTTGGATGTATAGAATGCAACAAATACTTAGA
GCTGGACAAGAAGACACAGAGCCAAGTCATGAAACTCGGACAGCAAATTT
TCGGACAACATTCGAACAGAAAAACGACTGGTGTGGCAGTTCCACAACAA
CCCCGTGAAAGACCACCTAAAAAGAAACTGGACCCGAAGGAAACTTGGGC
TGTATGGCAAAAGTCATTGCGCCAAAAAGAATTGCTGACTCAgcgcaaag
aaaaaaacacacaaagaaaaaagGCTCCAAAGAGACGGCCGAGACCGACA
AAAGAGCCACTCCCACCAGCATCGGTGATGTCATTAAAGGATATGGTTTC
TCAATTCCGAAGAGTGCTAAGAACACAAAAATCTTTTGGTCTGAAACCAA
GTCAACGGGTTGTGAACAACGTTAGTGAGATGATGGCAGCCGGTATTCCC
GACATTTTATCGGGATTCGCTATTTCGACGCACGTCAACATACCATTACG
TCATCGATCAACTATCGAGCTTGATAAATACGAGgtagtttatttatttc
atctAGTAAAACTTCCACCCCATCATATTAGGAAATTTTNGCCTTTTTGC
GTGGTTCTGGTGTCAGTTTAAcataaaaacatgaaacAAAACACCATGAG
GATAACCATGATGTTATATTTCTTCCTTGGATGTATAGAATGCAACAAAT
ACTTAGAGCTGGACAAGAAGACACAGAGCCAAGTCATGAAACTCGGACAG
CAAATTTTCGGACAACATTCGAACAGAAAAACGACTGGTGTGGCAGTTCC
ACAACAACCCCGTGAAAGACCACCTAAAAAGAAACTGGACCCGAAGGAAA
CTTGGGCTGTATGGCAAAAGTCATTGCGCCAAAAAGAATTGCTGACTCAg
cgcaaagaaaaaaacacacaaagaaaaaagGCTCCAAAGAGACGGCCGAG
ACCGACAAAAGAGCCACTCCCACCAGCATCGGTGATGTCATTAAAGGATA
TGGTTTCTCAATTCCGAAGAGTGCTAAGAACACAAAAATCTTTTGGTCTG
AAACCAAGTCAACGGGTTGTGAACAACGTTAGTGAGATGATGGCAGCCGG
TATTCCCGACATTTTATCGGGATTCGCTATTTCGACGCACGTCAACATAC
CATTACGTCATCGATCAACTATCGAGCTTGATAAATACGAGgtagtttat
ttatttcatctAGTAAAACTTCCACCCCATCATATTAGGAAATTTTNGCC
TTTTTGCGTGGTTCTGGTGTCAGTTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001912	XLOC_001912	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003420-protein	TCONS_00003420-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000028	supercontig	sc0000028:376913..388424 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.35355e-05	0	0.0502043	3.82367e-05	0.0918951	8.2974e-05	0	0.0992782	0	0.035109	2.08287e-05	1.22271e-05	0.138311	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00003420 vs. Swiss-Prot (Human)
Match: ADIPL (Adipolin OS=Homo sapiens GN=C1QTNF12 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.697e-21
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 3

Query:  627 AFLRGSGVSLKSGRFTAPTTAVYSFHGTVHI--SLPKGMKEFARKDFVTASICIDAQCKKHMSISSTSGLRSNSRIFSLNVSGYMYLEANRFVSVFIHNQSQRYNINIIRGSYFSGMLVGT 983
            AFLRGSG+SL SGRFTAP + ++ F  ++H+  S  +G      +D V   ICI++ C++H  + + SGL SNSR+F+L V G + L+A ++ SVF+ N S    + I  GS FSG+L+GT
Sbjct:  183 AFLRGSGLSLASGRFTAPVSGIFQFSASLHVDHSELQGKARLRARDVVCVLICIESLCQRHTCLEAVSGLESNSRVFTLQVQGLLQLQAGQYASVFVDNGSGAV-LTIQAGSSFSGLLLGT 302

The following BLAST results are available for this feature:

BLAST of TCONS_00003420 vs. Swiss-Prot (Human)

BLAST of TCONS_00003420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADIPL	1.697e-21	44.63	Adipolin OS=Homo sapiens GN=C1QTNF12 PE=1 SV=2	[more]

You are here

TCONS_00003420 (transcript) - C. hemisphaerica