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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003407 ID=TCONS_00003407|Name=TCONS_00003407|organism=Clytia hemisphaerica|type=transcript|length=1452bpRun BLAST on NCBI protein sequence of TCONS_00003407-protein >TCONS_00003407-protein ID=TCONS_00003407-protein|Name=TCONS_00003407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp IVCFEVLKSNMAVPDEQSGFRWLSEYEKTWEVIQEGDDGSLQASIDEIIHRun BLAST on NCBI transcript from alignment at sc0000028:65658..82844+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003407 ID=TCONS_00003407|Name=TCONS_00003407|organism=Clytia hemisphaerica|type=transcript|length=17187bp|location=Sequence derived from alignment at sc0000028:65658..82844+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:65658..82844+ >TCONS_00003407 ID=TCONS_00003407|Name=TCONS_00003407|organism=Clytia hemisphaerica|type=CDS|length=20808bp|location=Sequence derived from alignment at sc0000028:65658..82844+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003407 vs. Swiss-Prot (Human)
Match: T2H2L (General transcription factor IIH subunit 2-like protein OS=Homo sapiens GN=GTF2H2C PE=1 SV=1) HSP 1 Score: 407.527 bits (1046), Expect = 3.873e-138 Identity = 218/385 (56.62%), Postives = 281/385 (72.99%), Query Frame = 2
Query: 62 RWLSEYEKTWEVIQEGDDGSLQASIDEIIHKAKRKRILVRKGNVRLGMMRHLFIIMDMSRSMKESDLLRPNRLACVTKLLESFIIEYFDQNPISQLGIITTKNKRAEKLTELSGNPRMHVGALQAEALKGPDDGEPXXXXXXXXXXXXXXXXXXXXXXEVLLIYGSLTTCDPEDIHQTIAELKENNIRCSVLGLSAEIKVCKTITQETNGSYHVILDEKHCKDLLLEHIRPPEAKVNVEASLIRMGFPKHS------SNEYPALCLCHIE-QEQNDLKDVGYFCPQCFSQYCELPVECKICGLTLVSAPHLARSYQHLFPLPAFEEVKQNEEQQNDNTRTCQGCQNLLKDPIIYKCQDCSSLFCNDCDLFVHETLHTCPGCSSQI 1195
RW YE+TWE+++E + GSL+A+I++I+ KAKRKR+ G VRLGMMRHL++++D SR+M++ DL +PNRL C KLLE F+ EYFDQNPISQ+GII TK+KRAEKLTELSGNPR H+ +L+ EA+ GEPSL NSL +A+ L+H+P H SREVL+I+ SLTTCDP +I+ I LK IR SV+GLSAE++VC + +ET G+YHVILDE H K+LL H+ PP A + E SLIRMGFP+H+ + P+ + H++ + L GYFCPQC ++YCELPVECKICGLTLVSAPHLARSY HLFPL AF+E+ E + R C GCQ LKD +Y C C ++FC DCD+FVH++LH CPGC +I
Sbjct: 10 RWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGSRTMEDQDL-KPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLK-EAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEE---YNGERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKI 389 The following BLAST results are available for this feature:
BLAST of TCONS_00003407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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