TCONS_00003407-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003407-protein
Unique NameTCONS_00003407-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003407-protein ID=TCONS_00003407-protein|Name=TCONS_00003407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
IVCFEVLKSNMAVPDEQSGFRWLSEYEKTWEVIQEGDDGSLQASIDEIIH
KAKRKRILVRKGNVRLGMMRHLFIIMDMSRSMKESDLLRPNRLACVTKLL
ESFIIEYFDQNPISQLGIITTKNKRAEKLTELSGNPRMHVGALQAEALKG
PDDGEPSLQNSLKLALSLLRHLPSHASREVLLIYGSLTTCDPEDIHQTIA
ELKENNIRCSVLGLSAEIKVCKTITQETNGSYHVILDEKHCKDLLLEHIR
PPEAKVNVEASLIRMGFPKHSSNEYPALCLCHIEQEQNDLKDVGYFCPQC
FSQYCELPVECKICGLTLVSAPHLARSYQHLFPLPAFEEVKQNEEQQNDN
TRTCQGCQNLLKDPIIYKCQDCSSLFCNDCDLFVHETLHTCPGCSSQIGN
IEMNGIG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001902XLOC_001902Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003407TCONS_00003407Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR004595TFIIH_C1-like_dom
IPR013083Znf_RING/FYVE/PHD
IPR012170TFIIH_SSL1/p44
IPR007198Ssl1-like
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0000439 core TFIIH complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 69..249
e-value: 1.9E-5
score: 34.1
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 69..249
e-value: 1.0E-14
score: 54.5
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 71..249
score: 9.636
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 67..238
IPR004595TFIIH C1-like domainSMARTSM01047C1_4_2coord: 353..396
e-value: 2.2E-15
score: 67.1
IPR004595TFIIH C1-like domainPFAMPF07975C1_4coord: 362..396
e-value: 9.6E-11
score: 41.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 337..395
e-value: 2.4E-5
score: 24.1
IPR012170TFIIH subunit Ssl1/p44PIRSFPIRSF015919TFIIH_SSL1coord: 6..397
e-value: 1.5E-152
score: 506.2
IPR012170TFIIH subunit Ssl1/p44TIGRFAMTIGR00622TIGR00622coord: 294..396
e-value: 1.2E-35
score: 120.6
IPR007198Ssl1-likePFAMPF04056Ssl1coord: 75..268
e-value: 3.0E-81
score: 271.8
IPR007198Ssl1-likeCDDcd01453vWA_transcription_factor_IIH_typecoord: 67..252
e-value: 4.63411E-94
score: 281.912
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 369..389
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 367..390
score: 9.473
NoneNo IPR availableSUPERFAMILY57889Cysteine-rich domaincoord: 329..394

Blast
[Close]
BLAST of TCONS_00003407-protein vs. Swiss-Prot (Human)
Match: T2H2L (General transcription factor IIH subunit 2-like protein OS=Homo sapiens GN=GTF2H2C PE=1 SV=1)

HSP 1 Score: 441.425 bits (1134), Expect = 2.007e-154
Identity = 218/385 (56.62%), Postives = 281/385 (72.99%), Query Frame = 0 
Query:   21 RWLSEYEKTWEVIQEGDDGSLQASIDEIIHKAKRKRILVRKGNVRLGMMRHLFIIMDMSRSMKESDLLRPNRLACVTKLLESFIIEYFDQNPISQLGIITTKNKRAEKLTELSGNPRMHVGALQAEALKGPDDGEPSLQNSLKLALSLLRHLPSHASREVLLIYGSLTTCDPEDIHQTIAELKENNIRCSVLGLSAEIKVCKTITQETNGSYHVILDEKHCKDLLLEHIRPPEAKVNVEASLIRMGFPKHS------SNEYPALCLCHIE-QEQNDLKDVGYFCPQCFSQYCELPVECKICGLTLVSAPHLARSYQHLFPLPAFEEVKQNEEQQNDNTRTCQGCQNLLKDPIIYKCQDCSSLFCNDCDLFVHETLHTCPGCSSQI 398
            RW   YE+TWE+++E + GSL+A+I++I+ KAKRKR+    G VRLGMMRHL++++D SR+M++ DL +PNRL C  KLLE F+ EYFDQNPISQ+GII TK+KRAEKLTELSGNPR H+ +L+ EA+     GEPSL NSL +A+  L+H+P H SREVL+I+ SLTTCDP +I+  I  LK   IR SV+GLSAE++VC  + +ET G+YHVILDE H K+LL  H+ PP A  + E SLIRMGFP+H+       +  P+  + H++   +  L   GYFCPQC ++YCELPVECKICGLTLVSAPHLARSY HLFPL AF+E+   E    +  R C GCQ  LKD  +Y C  C ++FC DCD+FVH++LH CPGC  +I
Sbjct:   10 RWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGSRTMEDQDL-KPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLK-EAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEE---YNGERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKI 389
The following BLAST results are available for this feature:
BLAST of TCONS_00003407-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T2H2L2.007e-15456.62General transcription factor IIH subunit 2-like pr... [more]
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