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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003399 ID=TCONS_00003399|Name=TCONS_00003399|organism=Clytia hemisphaerica|type=transcript|length=1085bp
ATTCCTTGATCAGCCTCCAGCGGAGTTGTCTCGTCATTGGTCGTCAATGT
TCGGAGTGAACCCCTTTCTCTCCTAGGTTCTGGACATTCCCTTGAAAAGT
GGCCCAATTTATGGCAATTGTAGCACTCCACACTTCTCCCATTCGACTCT
CCTCGCCTCTCATTCATTCTCCCACCGTTAGTTGGACCTTGTCCATTCCA
CTGACGGTCATGGCCGCCTCCTCTCCCATAACTTCTAAACTGCCGACCAC
TAGGTCGAAACTTGCTATGGCCGCTATTTCGTCGATCTTCAGCCCTGATC
TGAGCCTCCGAAAGTTTTGTAACAATGTCTTTCAGCGTGTCCATCGTTAC
ATCCGATCTCGCAGTAGCAGCATCTGAGGGCTTGTAAGCCGTCAGATAGC
ACCTTCTCGCGAGATCCTCTGCCTCCCTGGCCGTCTTTGGCGATCCAAAC
ACAACCATGTTCCTCATCTTTTCAGTCAGTCCTGATATGAAAAGATCCAT
GAGAAACGTGCCATCGTGTGAATCCAAAATCTGTCGGCGTAGTCCCCTAC
CGACTCTTTCTCTAACATCTTTATCCTTTCTAGGCTCGAAAGGGTAAAAA
CGGTTTTGAACTTTTCGAGGAAAAGCTTCAAAACGTTCTCCAAGCTTGTT
TTATCCGTAGCCGGAAGGTCCTCGAGCCAACGCGCGGCCCTTCCCGCCAC
GTATACCGAGAGATATTCAAGGGACTCATTATCGTCCCATATCTGAGCCT
TAGCTAGAAGCCTAAACCGTTTCACAAAAGCCACTGGGTCCTCGTTATCG
TTTCCCGAAAAAATAGCAACGCTAAACTTAGGGGCCGCTGGCCGTTTACT
TTTTGAAACATATTTTAACGCGTTAGTAAGGCTCCTAAGAACCTCATCGT
TTGGGAGTTCAGGTGTAGCGTCTTCGCGGGGCGCAATCCCTTCAGTATTC
GCCATTATATAGTGGTCCTCTTCTAAGCTGTTGGGGGAGCTGGACCGTTC
AAAACCTAGCAAGGGAGAAAAGCTAAGATCGTCGTTCATGGGACGCTGTA
ACAAAACAgtttcttaatcttttttataagatgcG Run BLAST on NCBI protein sequence of TCONS_00003399-protein >TCONS_00003399-protein ID=TCONS_00003399-protein|Name=TCONS_00003399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MNDDLSFSPLLGFERSSSPNSLEEDHYIMANTEGIAPREDATPELPNDEV
LRSLTNALKYVSKSKRPAAPKFSVAIFSGNDNEDPVAFVKRFRLLAKAQI
WDDNESLEYLSVYVAGRAARWLEDLPATDKTSLENVLKLFLEKFKTVFTL
SSLERIKMLEKESVGDYADRFWIHTMARFSWIFSYQD Run BLAST on NCBI transcript from alignment at sc0000026:657547..658631 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003399 ID=TCONS_00003399|Name=TCONS_00003399|organism=Clytia hemisphaerica|type=transcript|length=1085bp|location=Sequence derived from alignment at sc0000026:657547..658631 (Clytia hemisphaerica)
CgcatcttataaaaaagattaagaaacTGTTTTGTTACAGCGTCCCATGA
ACGACGATCTTAGCTTTTCTCCCTTGCTAGGTTTTGAACGGTCCAGCTCC
CCCAACAGCTTAGAAGAGGACCACTATATAATGGCGAATACTGAAGGGAT
TGCGCCCCGCGAAGACGCTACACCTGAACTCCCAAACGATGAGGTTCTTA
GGAGCCTTACTAACGCGTTAAAATATGTTTCAAAAAGTAAACGGCCAGCG
GCCCCTAAGTTTAGCGTTGCTATTTTTTCGGGAAACGATAACGAGGACCC
AGTGGCTTTTGTGAAACGGTTTAGGCTTCTAGCTAAGGCTCAGATATGGG
ACGATAATGAGTCCCTTGAATATCTCTCGGTATACGTGGCGGGAAGGGCC
GCGCGTTGGCTCGAGGACCTTCCGGCTACGGATAAAACAAGCTTGGAGAA
CGTTTTGAAGCTTTTCCTCGAAAAGTTCAAAACCGTTTTTACCCTTTCGA
GCCTAGAAAGGATAAAGATGTTAGAGAAAGAGTCGGTAGGGGACTACGCC
GACAGATTTTGGATTCACACGATGGCACGTTTCTCATGGATCTTTTCATA
TCAGGACTGACTGAAAAGATGAGGAACATGGTTGTGTTTGGATCGCCAAA
GACGGCCAGGGAGGCAGAGGATCTCGCGAGAAGGTGCTATCTGACGGCTT
ACAAGCCCTCAGATGCTGCTACTGCGAGATCGGATGTAACGATGGACACG
CTGAAAGACATTGTTACAAAACTTTCGGAGGCTCAGATCAGGGCTGAAGA
TCGACGAAATAGCGGCCATAGCAAGTTTCGACCTAGTGGTCGGCAGTTTA
GAAGTTATGGGAGAGGAGGCGGCCATGACCGTCAGTGGAATGGACAAGGT
CCAACTAACGGTGGGAGAATGAATGAGAGGCGAGGAGAGTCGAATGGGAG
AAGTGTGGAGTGCTACAATTGCCATAAATTGGGCCACTTTTCAAGGGAAT
GTCCAGAACCTAGGAGAGAAAGGGGTTCACTCCGAACATTGACGACCAAT
GACGAGACAACTCCGCTGGAGGCTGATCAAGGAAT Coding sequence (CDS) from alignment at sc0000026:657547..658631 >TCONS_00003399 ID=TCONS_00003399|Name=TCONS_00003399|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0000026:657547..658631 (Clytia hemisphaerica)
ATGAACGACGATCTTAGCTTTTCTCCCTTGCTAGGTTTTGAACGGTCCAG
CTCCCCCAACAGCTTAGAAGAGGACCACTATATAATGGCGAATACTGAAG
GGATTGCGCCCCGCGAAGACGCTACACCTGAACTCCCAAACGATGAGGTT
CTTAGGAGCCTTACTAACGCGTTAAAATATGTTTCAAAAAGTAAACGGCC
AGCGGCCCCTAAGTTTAGCGTTGCTATTTTTTCGGGAAACGATAACGAGG
ACCCAGTGGCTTTTGTGAAACGGTTTAGGCTTCTAGCTAAGGCTCAGATA
TGGGACGATAATGAGTCCCTTGAATATCTCTCGGTATACGTGGCGGGAAG
GGCCGCGCGTTGGCTCGAGGACCTTCCGGCTACGGATAAAACAAGCTTGG
AGAACGTTTTGAAGCTTTTCCTCGAAAAGTTCAAAACCGTTTTTACCCTT
TCGAGCCTAGAAAGGATAAAGATGTTAGAGAAAGAGTCGGTAGGGGACTA
CGCCGACAGATTTTGGATTCACACGATGGCACGTTTCTCATGGATCTTTT
CATATCAGGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003399-exon-sc0000026-1491911889:657547..658631 | TCONS_00003399-exon-sc0000026-1491911889:657547..658631 | Clytia hemisphaerica | exon |
| TCONS_00003399-exon-sc0000026-1510915933:657547..658631 | TCONS_00003399-exon-sc0000026-1510915933:657547..658631 | Clytia hemisphaerica | exon |
| TCONS_00003399-exon-sc0000026-1575043694:657547..658631 | TCONS_00003399-exon-sc0000026-1575043694:657547..658631 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:657547..658631 . |
Blast
The following BLAST results are available for this feature:
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