TCONS_00003397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003397
Unique NameTCONS_00003397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003397 ID=TCONS_00003397|Name=TCONS_00003397|organism=Clytia hemisphaerica|type=transcript|length=445bp
caGGACTTACTTCATattgtttgtacataaaagttatctttgaagttcta
tttcaatgatcttaagttatcaaaaatagcaacaaaaatttttttccggc
cggccgaatgagagcttttttccttcacccgcattccggaaacgcTACAT
TATTTTATTTCCGCCTCAGTAGAAATGTAAGCGTTTATGAACTAAAAGCT
CCGCTGAAGGTGAAGGTTTCGTCTCCATAAGATAAGAACAGCAAATGTCA
AAGTAACCATAGCAACCACAGGTGAGTGGTATTGTGGGTAATGAGATGAA
AAGAAGGCTAGTGTGTAACCAAACCCTTTGAAGGTAGTCCCTACCGCCCC
ACGAACGCCCGTGATAAAGCTTGAATCTTGTGGATTGACCGTCTGTAATA
TTAGAAAAGTGTTGGTCAACTGTCCTTGGAAGTATATGAAATTTT
Run BLAST on NCBI

transcript from alignment at sc0000026:608393..608837

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003397 ID=TCONS_00003397|Name=TCONS_00003397|organism=Clytia hemisphaerica|type=transcript|length=445bp|location=Sequence derived from alignment at sc0000026:608393..608837 (Clytia hemisphaerica)
AAAATTTCATATACTTCCAAGGACAGTTGACCAACACTTTTCTAATATTA
CAGACGGTCAATCCACAAGATTCAAGCTTTATCACGGGCGTTCGTGGGGC
GGTAGGGACTACCTTCAAAGGGTTTGGTTACACACTAGCCTTCTTTTCAT
CTCATTACCCACAATACCACTCACCTGTGGTTGCTATGGTTACTTTGACA
TTTGCTGTTCTTATCTTATGGAGACGAAACCTTCACCTTCAGCGGAGCTT
TTAGTTCATAAACGCTTACATTTCTACTGAGGCGGAAATAAAATAATGTA
gcgtttccggaatgcgggtgaaggaaaaaagctctcattcggccggccgg
aaaaaaatttttgttgctatttttgataacttaagatcattgaaatagaa
cttcaaagataacttttatgtacaaacaatATGAAGTAAGTCCtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001892XLOC_001892Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003397-exon-sc0000026-1491911889:608393..608837TCONS_00003397-exon-sc0000026-1491911889:608393..608837Clytia hemisphaericaexon
TCONS_00003397-exon-sc0000026-1510915933:608393..608837TCONS_00003397-exon-sc0000026-1510915933:608393..608837Clytia hemisphaericaexon
TCONS_00003397-exon-sc0000026-1575043694:608393..608837TCONS_00003397-exon-sc0000026-1575043694:608393..608837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:608393..608837 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.504531	0.675375	0.183463	0.218184	1.15098	1.5447	0.61027	1.36371	0.724861	0.703648	0.152304	0.965176	0.248945	0.104066	0	0.0918762	0.897344	1.29908	0.159804	0.334446	0.46735	2.04629	0.692671	1.13003	1.86004	2.36699	1.2821	1.13963	0	0.173387
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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