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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003395 ID=TCONS_00003395|Name=TCONS_00003395|organism=Clytia hemisphaerica|type=transcript|length=1006bp
CGGTAaacgaaaaatataaaaaatataaaaacatcctTTAAGTCCCTCAT
AACGACGATAAGGAAGCTAACCTATTTAACAAGAATTGGTTCTTCTGTTT
CTCGCTTGATTTCACTTCCAATAAATCTTGTTCCTCGCGATGTAAGATTT
CTAAATACTGCTTAGCAGCTCTCAATATCATGATCTTTGGTAGTGTCTTC
TTGTTTGTGATATAAGGGATGGAAGAAGCCAGTTTCTGAAATCTTTGGTG
TTGCTCCACTCGACGACGTCTTTCGATTATGTTTTGATTCTTCTTAGATT
TCTGGATTTTAAATTCTGAATCCGGTGAGTCTTTACTACGGAAGTCATTC
TTTTTCCCgccattttctttattttcaaatgcAAGATTCGGTGAGTCCGG
GAACTGAAAAATACTGTTGTATTGTCCTATGTGTGTTTGAGTGTTTGTAT
TAGACGAGTCCGGAAAATAAATGTTAAATTCGTCTTCATTATCTTCTGTC
AGTCTTCCAACAACAAAAGAAGTGTTCGGGGTTATCGAGTCTGCAGATTT
TGAAGGAAACAAAGGAATACTTGTTTCTTGTTGGGAGTTCATTTGCTCGC
GTGATTTCTGGTTTGAAAATCTGGGCAATGGAGACAAAACTGTATTGTTT
TGCTTACGTTTAATTGTTGGAGATTCCATTGTAATGTCTGTTAGATATTT
CTCAAATTTATCTTCGGTTAGAATTTTCGGTGTAGCCAATGACGGTTCAC
TAGCATCTTCTTTGGTGAGTTTGACCATTGATTTTGTAATTCCAAGCGGT
GAAGTCAAATAGCATAGTATTTCATCTAGCTGTTTCATATCCTTGGTCTC
ACACAGATTACCATTAAAATCTTCTGGTGAGATTGATATCTCAGGGAGAG
TGAAACCACGCCTTTCCAAAACAGAAAGTGTTTGTAATGTTTGGCACGCC
ATGTCAAAGTTTGTCAGTTCTCAATTTCGGTGATTTGTCCCGTTTACTGT
TCGCTT Run BLAST on NCBI protein sequence of TCONS_00003395-protein >TCONS_00003395-protein ID=TCONS_00003395-protein|Name=TCONS_00003395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MACQTLQTLSVLERRGFTLPEISISPEDFNGNLCETKDMKQLDEILCYLT
SPLGITKSMVKLTKEDASEPSLATPKILTEDKFEKYLTDITMESPTIKRK
QNNTVLSPLPRFSNQKSREQMNSQQETSIPLFPSKSADSITPNTSFVVGR
LTEDNEDEFNIYFPDSSNTNTQTHIGQYNSIFQFPDSPNLAFENKENGGK
KNDFRSKDSPDSEFKIQKSKKNQNIIERRRRVEQHQRFQKLASSIPYITN
KKTLPKIMILRAAKQYLEILHREEQDLLEVKSSEKQKNQFLLNRLASLSS
L Run BLAST on NCBI transcript from alignment at sc0000026:586754..587759 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003395 ID=TCONS_00003395|Name=TCONS_00003395|organism=Clytia hemisphaerica|type=transcript|length=1006bp|location=Sequence derived from alignment at sc0000026:586754..587759 (Clytia hemisphaerica)
AAGCGAACAGTAAACGGGACAAATCACCGAAATTGAGAACTGACAAACTT
TGACATGGCGTGCCAAACATTACAAACACTTTCTGTTTTGGAAAGGCGTG
GTTTCACTCTCCCTGAGATATCAATCTCACCAGAAGATTTTAATGGTAAT
CTGTGTGAGACCAAGGATATGAAACAGCTAGATGAAATACTATGCTATTT
GACTTCACCGCTTGGAATTACAAAATCAATGGTCAAACTCACCAAAGAAG
ATGCTAGTGAACCGTCATTGGCTACACCGAAAATTCTAACCGAAGATAAA
TTTGAGAAATATCTAACAGACATTACAATGGAATCTCCAACAATTAAACG
TAAGCAAAACAATACAGTTTTGTCTCCATTGCCCAGATTTTCAAACCAGA
AATCACGCGAGCAAATGAACTCCCAACAAGAAACAAGTATTCCTTTGTTT
CCTTCAAAATCTGCAGACTCGATAACCCCGAACACTTCTTTTGTTGTTGG
AAGACTGACAGAAGATAATGAAGACGAATTTAACATTTATTTTCCGGACT
CGTCTAATACAAACACTCAAACACACATAGGACAATACAACAGTATTTTT
CAGTTCCCGGACTCACCGAATCTTgcatttgaaaataaagaaaatggcGG
GAAAAAGAATGACTTCCGTAGTAAAGACTCACCGGATTCAGAATTTAAAA
TCCAGAAATCTAAGAAGAATCAAAACATAATCGAAAGACGTCGTCGAGTG
GAGCAACACCAAAGATTTCAGAAACTGGCTTCTTCCATCCCTTATATCAC
AAACAAGAAGACACTACCAAAGATCATGATATTGAGAGCTGCTAAGCAGT
ATTTAGAAATCTTACATCGCGAGGAACAAGATTTATTGGAAGTGAAATCA
AGCGAGAAACAGAAGAACCAATTCTTGTTAAATAGGTTAGCTTCCTTATC
GTCGTTATGAGGGACTTAAaggatgtttttatattttttatatttttcgt
tTACCG Coding sequence (CDS) from alignment at sc0000026:586754..587759 >TCONS_00003395 ID=TCONS_00003395|Name=TCONS_00003395|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0000026:586754..587759 (Clytia hemisphaerica)
ATGGCGTGCCAAACATTACAAACACTTTCTGTTTTGGAAAGGCGTGGTTT
CACTCTCCCTGAGATATCAATCTCACCAGAAGATTTTAATGGTAATCTGT
GTGAGACCAAGGATATGAAACAGCTAGATGAAATACTATGCTATTTGACT
TCACCGCTTGGAATTACAAAATCAATGGTCAAACTCACCAAAGAAGATGC
TAGTGAACCGTCATTGGCTACACCGAAAATTCTAACCGAAGATAAATTTG
AGAAATATCTAACAGACATTACAATGGAATCTCCAACAATTAAACGTAAG
CAAAACAATACAGTTTTGTCTCCATTGCCCAGATTTTCAAACCAGAAATC
ACGCGAGCAAATGAACTCCCAACAAGAAACAAGTATTCCTTTGTTTCCTT
CAAAATCTGCAGACTCGATAACCCCGAACACTTCTTTTGTTGTTGGAAGA
CTGACAGAAGATAATGAAGACGAATTTAACATTTATTTTCCGGACTCGTC
TAATACAAACACTCAAACACACATAGGACAATACAACAGTATTTTTCAGT
TCCCGGACTCACCGAATCTTgcatttgaaaataaagaaaatggcGGGAAA
AAGAATGACTTCCGTAGTAAAGACTCACCGGATTCAGAATTTAAAATCCA
GAAATCTAAGAAGAATCAAAACATAATCGAAAGACGTCGTCGAGTGGAGC
AACACCAAAGATTTCAGAAACTGGCTTCTTCCATCCCTTATATCACAAAC
AAGAAGACACTACCAAAGATCATGATATTGAGAGCTGCTAAGCAGTATTT
AGAAATCTTACATCGCGAGGAACAAGATTTATTGGAAGTGAAATCAAGCG
AGAAACAGAAGAACCAATTCTTGTTAAATAGGTTAGCTTCCTTATCGTCG
TTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003395-exon-sc0000026-1491911889:586754..587759 | TCONS_00003395-exon-sc0000026-1491911889:586754..587759 | Clytia hemisphaerica | exon |
| TCONS_00003395-exon-sc0000026-1510915933:586754..587759 | TCONS_00003395-exon-sc0000026-1510915933:586754..587759 | Clytia hemisphaerica | exon |
| TCONS_00003395-exon-sc0000026-1575043694:586754..587759 | TCONS_00003395-exon-sc0000026-1575043694:586754..587759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:586754..587759 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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