TCONS_00003389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003389
Unique NameTCONS_00003389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003389 ID=TCONS_00003389|Name=TCONS_00003389|organism=Clytia hemisphaerica|type=transcript|length=334bp
ATATCTATGTTCTGTCACAGGCCAAATGGAAggaaattatttattattat
aagAAGAGCATTGCGTGTAAAGTGTACAAAATATACAACGGTCTCAGCTC
GCCACTTTTATCGGAACTTATCAGCAAATCAAATACACgtggaaataaaa
aatcttcaaaaattgacCAGGTAAAATTCACCTTTGTTGATTATAAACGT
TCATTTATGTACAGAGCAGCTATTGTTTGGAATAACATTCCCAGCTCAAT
AcgagaaataaaaacttacaaagCTTTTACAAAAGCCTTGAATAAATCTG
ATTGTTtggataaaattaattttaatatgACGGG
Run BLAST on NCBI

protein sequence of TCONS_00003389-protein

>TCONS_00003389-protein ID=TCONS_00003389-protein|Name=TCONS_00003389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
IYVLSQAKWKEIIYYYKKSIACKVYKIYNGLSSPLLSELISKSNTRGNKK
SSKIDQVKFTFVDYKRSFMYRAAIVWNNIPSSIREIKTYKAFTKALNKSD
CLDKINFNMT
Run BLAST on NCBI

transcript from alignment at sc0000026:494699..495032

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003389 ID=TCONS_00003389|Name=TCONS_00003389|organism=Clytia hemisphaerica|type=transcript|length=334bp|location=Sequence derived from alignment at sc0000026:494699..495032 (Clytia hemisphaerica)
CCCGTcatattaaaattaattttatccaAACAATCAGATTTATTCAAGGC
TTTTGTAAAAGctttgtaagtttttatttctcgTATTGAGCTGGGAATGT
TATTCCAAACAATAGCTGCTCTGTACATAAATGAACGTTTATAATCAACA
AAGGTGAATTTTACCTGgtcaatttttgaagattttttatttccacGTGT
ATTTGATTTGCTGATAAGTTCCGATAAAAGTGGCGAGCTGAGACCGTTGT
ATATTTTGTACACTTTACACGCAATGCTCTTcttataataataaataatt
tccTTCCATTTGGCCTGTGACAGAACATAGATAT

Coding sequence (CDS) from alignment at sc0000026:494699..495032

>TCONS_00003389 ID=TCONS_00003389|Name=TCONS_00003389|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0000026:494699..495032 (Clytia hemisphaerica)
CGTcatattaaaattaattttatccaAACAATCAGATTTATTCAAGGCTT
TTGTAAAAGctttgtaagtttttatttctcgTATTGAGCTGGGAATGTTA
TTCCAAACAATAGCTGCTCTGTACATAAATGAACGTTTATAATCAACAAA
GGTGAATTTTACCTGgtcaatttttgaagattttttatttccacGTGTAT
TTGATTTGCTGATAAGTTCCGATAAAAGTGGCGAGCTGAGACCGTTGTAT
ATTTTGTACACTTTACACGCAATGCTCTTcttataataataaataatttc
cTTCCATTTGGCCTGTGACAGAACATAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001884XLOC_001884Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003389-proteinTCONS_00003389-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003389-exon-sc0000026-1491911889:494699..495032TCONS_00003389-exon-sc0000026-1491911889:494699..495032Clytia hemisphaericaexon
TCONS_00003389-exon-sc0000026-1510915933:494699..495032TCONS_00003389-exon-sc0000026-1510915933:494699..495032Clytia hemisphaericaexon
TCONS_00003389-exon-sc0000026-1575043694:494699..495032TCONS_00003389-exon-sc0000026-1575043694:494699..495032Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:494699..495032 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.96599	0.553533	3.21352	2.82954	5.3584	1.81469	3.49768	2.15529	1.19584	0	0.862634	0.626308	1.85683	1.96027	0.483482	0.3459	0.426121	0	0.905111	0.631422	2.46969	2.60345	1.62709	1.05195	1.21889	3.8074	0.95101	0.415332	1.45928	1.60475
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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