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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003360 ID=TCONS_00003360|Name=TCONS_00003360|organism=Clytia hemisphaerica|type=transcript|length=756bp
aatttcaaaaatgaggTCGATCACCACTGACCACACTGCAGTGCTACATA
ATGGACAttaatttgtttttgaataagatgAAGAAGGAAGAGAACCATCA
TGAAGAAACCTGCTAGAGATCTTAAACTGGATATTATCAACCTCCAGAAG
CTAATGCACGTGACTCGCATTAGTACACAAGGTGCTAAACATAGTTCTTA
CCGTCAAAGTTGGACATTTTCATACACGTTGCAATATTCTGATGATTATG
AAGTGTGGCATGAATATAAAACACAAAATATCGATGGCTCTTCATCAATG
ATTCTACCAGGAAACCGAGATGGAACAACCATAGCGTCCAACATTGTCGA
CCTTCGTGCACAATACATTCGTCTGATACCGAAATCGTTCAAAGGAACAT
ACATGTACCTGAGAAGTTGTGGTTGTCCCTCAGGTAAACTCACTTTTCCT
GTATTAACAAAACCacgaaaatcaaacattttaaaaagataagAATTTGa
tttggaccaaaatttagcAAAAGCTGACCAGAGAATGATTCGAATAATGC
GGTTGGCATCCTCACTGCAAGATATTGTACTTATTTTGCTATACCCATTG
AaatttctgacttaaaaacataAGATAACCAGGAATACCCAGAAATCCAT
CTATAGATAACCAAGATTTGAATTCAAGTAATTCTTTTTTACTGCAATGA
TGATGAAACGCAATGAATGAGAAACCCTGGAGATTGTTAAGAGATGGAGA
AACAGC Run BLAST on NCBI transcript from alignment at sc0000026:834689..839991- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003360 ID=TCONS_00003360|Name=TCONS_00003360|organism=Clytia hemisphaerica|type=transcript|length=5303bp|location=Sequence derived from alignment at sc0000026:834689..839991- (Clytia hemisphaerica)
AATTTCAAAAATGAGGTCGATCACCACTGACCACACTGCAGTGCTACATA
ATGGACATTAATTTGTTTTTGAATAAGATGAAGAAGGAAGAGAACCATCA
TGAAGAAACCTGCTAGAGATCTTAAACTGGATATTGTAAGTATTGTTTGT
ATTTTATTCATTTGTAGAAGTAGAATTAAGAGCCCCACGGCGGTAGACCA
GAGAAAACATTATACTGTCTGACTGTGAAGTCGGGTAACTTGCATCAGTG
GAGGGAAACTTGCATAGCCATCAAATGACTTACCAATCAAAGCAGCAAAA
TTTCAGAATGAACTACCGTGAGTGGTCCTAAATCCGACAGCCCTGCCTAA
ATCCGATGGGGTCTTTCAAAAATACAAACTAAAATAAAAACAAACCTTTC
GCTGTGACGCAATGAAGATACCAAAGTGTCAACTAAACTGAGAGATTTGA
TACACTGAACCAATTGAACCAAATAACAATAATTGCTTCTTAATACAAAA
CATAATTTTTTGTTACAAAATTGTTAATGTTTTAAACACGAGCAATTACC
GTGAAAAGCACAGCTCAAAATCATATATTTACGCTGTGCCGACGAATCGA
GATTCTATTCATCGCGCAATCAGTGAAGACAAAAGTAACCATGACNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGTAATTACTGTTATACATTTGGGGATCATGTAAA
AGATTTCTTTCAAAATAAACTCATTTCAACTACACTTGGAGGTTTCTGGG
GAATTCGTAAATAGTAAACTGCATACTGATACAGTCTGCTAGACATTAAT
ATGGTAATATTTGCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTGGTAATATTTGCTCTTCATCTTT
GATTTTTTCTACAGTGATTAGATTGACACATGCGCGATAAAATTTCTATT
ATTTGTCTTCAGAGGTTACTATTTCCTTTGAAAACTCAACCTCTGATACT
CAGGGTAACGAGCAATCGATTCAGAATAATAATGGAGGTATATAATTATT
TTTACAACTCACACTTTATGATCACATTAAATAATTGAAATCTTGACATT
ATAGTCATCTTGTTAGATGTTTTATTTCGATAGTTTATTTTTCAGCTTGG
AGAGGGAATGTTTGTAAATATTGGATTTTTTTTCATAGCAGTTATTTGGG
GGGGTCGGCTTTAGGCAGGGCTGTCAGATTTAGGACCACTCGGTACGCAG
CTCCGCTCACAGCTTTACTCTCAAAAGTCATCAATGGGCAGTTCCAGAAA
ACAACTATTACCCCCTGTGGACGACAGGGTTTTTTGGATTTTTTTTTTCA
CTTGAATATCCTGAGAAATTTGAGAAAGGTTTCGGAAAATCCAGGATTTT
TCCTCATTATTTAGTCATGTATATTGGAAAATCCATAAAATTTGCTCTTA
TTTCTTGCCAAGTATTGGAAAATCCAAGATTATTCCATAAAAAATCTCGA
ATGTTATACTGAAATCATGAAGTTTTTCAAAAGTAAATTGTTACGGAATA
TCCATGTCGTCTACAGGGCGGTAACAGACTATAACTTGAACCGCCCAATG
ACGCACAAAATCAAAAAAATAAACCAATAAAAGACATGGTTTCTGCCTAC
TTTTTCAGCCCCCCCTTAAATCTTTCTGAATTTTAATCTAATAAATCTAA
TTTAAAATTGTATAAATTACCTATTTATTCTATATTTTCATATCTTTATC
TTAGCTATTAAACCTTTTCATTTTTGTATTTTTACGTAGAATTTGCGAGA
TTAGGCATTTTTTGTCTTATGCAAATATAAAACTAGAACTAGAACTAAAG
ATGTAATTTTGCCCTTAAAGAAAACTACCCCCTTAAATTGAACAAAAATT
ACCAGTACCCCTTGTTAGAATGCCCCCCCCCCAAAAAAAAGGAGTCCCCC
CTCAGATTTTTATCTTTAGAGTTTGACAATAACAAAGTATATACAATGAT
TGGCTTGATATCAATGCCATCAACATTATATTAGGCACATAATGATATCC
AACTAAATAAAACTCAATAAAAAGAAATCATAACTTGGAAATAAACTGGA
TCCTTTAATCAAATGATACAAATAAAACCAAACAAAAGTTGCAGTATCTG
GTATAACAGTTGTGTTTTGCTCATATTTTAGGCTTTGTAAATTTATCTTC
ATTATTAGATTTGAACAGGGAATGTCTTCTGATTGTAGTCCTAGTTTAAG
TTAGGTCAAGCAAGGTCTTTCGAAGTAGAGAATTTAGGCAGTAAAACACA
AGTAAGATTTCATGCTTATGACATTGATTTTGAGGCCCAGAAAACCCGAG
TTATTTTTCCCGATTTATTTTTCCGAGTTACGGAAAACCCGAGTTATGAC
GTCATTTTCAGAAAATTATTTTTTTCCTTCCGTTAAATTTTCGAGTTATT
TACTGACAGGTTTCAAAAGTTTTTTTTTTCTCTTTCCAATCTTTTTCATT
TTTTACGTATATTAAAATTGAAAACAGGTAACCGTTTTTTCAAAGGTTAA
TTAGATTCGATTGGAACTTAGATACCAGACCCCAAAGCCTCTTAAGTATT
TTGTTACAGCTAAGGTACTGGGGACAAGTTTTCCATAGAGAAAGCATGAG
ACGCGAAAAAGAAAATGCTTGCGGCAGTTGACAACATGAAAGAAGATCAA
GAAAGATGTACATCGTGGACCAATTTAAAAGAAAACTAAAAACTATTTGT
GAGCAAGTGATTTAAAGGAAGAAAAATAACTCGAAATCTTAAAAGAAGGA
AAAAAAACCGAGTTAAAAATCTTGAAATAACTCGAAAAATTAATGGAAGA
AAAAAAACCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCGAGTTAAAATCTGGAAATAACTCGAAAATTTAAA
GGAAGAAAAAAAAACCGAGTTAAAATTTTTGAAATAACTCGAAAATTTAA
CGGAAGGAAAAAAAACCGAGTTAAAATTCATGAAATAACTCGAAAATTTA
ATGGAAGGAAAAAAAACGAGTTATAAATTTGAGTGTGACGTCATAATTTT
CTGAAAATGACGTCATAACTCAGGTTTTCCGTAACTCGGAAAAATAACTC
GGGAAAGATAACTCGGGTTTTCCGGGCCTCGTTGATTTTGGATGTGACAG
AACATGTAAAAATAAGTCTCTGCTGCAAATGTCAAAGATCATTGATGTCG
AGCAACTATTTCAAGAGAATCTTTCTATCTTTCAGCAAACAATAGAGAGA
GGGAAGAGAGGGAAGAGAGGATAAAGATTCATTGGCCCTGGCGGGCCATT
TTGAGTGGAAGGGCCAAGATTTTGGAAAAAAATGTCGGCCACCATGGTTG
GGCAACGAAAAAAGAAAGTTTTTCACTTTTTACACCCTCAAAACACCTTA
AAACATCATCTAATTGAGGAGAATAATAGTTTTTATGGTTTGATTTGGTC
TGTTAAAAGTTGTTCTTATGTGTATAAGTTTCAATATAAAGCATGGTCTG
CAAAAAAGTGGGCATGATATTGTGAGCACAAAAATGGGAAAGAATATATT
ATTAGATAAAGAAAATTATTATCAATAAAACCAAAGACATAACATCTGAA
ATTCAATCAACAATTTTCAAATTTTAGTATCCCCCCTTTTTATTTCCCCC
CCTTCCTTATTCTTGGGGATTTCCCAAACTCAAGATTAAGTTGGCGGGTT
TCATGAGTTTTGAGCTCCTCTTGATGCACTGTATGGATGTGCTTTTAATA
AAAATAAGATATGAAATCGAACTACACTGTAAGGGTCAGAAACGTTCAGT
AAAATGCATATTAAGGGAACCATTTCCCAGGTTTAATGGAAACTGACTTC
CAGTTTAAGCTCGAGTTAGCAAGAGTTAAGGATATTTTTAAATGATGTAT
AAAGGTGTGTCTCCTGACAGCACAAAGAATTGTTTCAATGTTGTTCTTTC
TATTGTTAAAAATGCTGTGTAAGCAAATAGTAAAAGTTACGTTGGATGAT
GTCCTTTAACTATACTTTTCTTATTTCAACAGATCAACCTCCAGAAGCTA
ATGCACGTGACTCGCATTAGTACACAAGGTGCTAAACATAGTTCTTACCG
TCAAAGTTGGACATTTTCATACACGTTGCAATATTCTGATGATTATGAAG
TGTGGCATGAATATAAAACACAAAATATCGATGGCTCTTCATCAATGGTA
TGAAAAAGTTGTTTGTTTATTTTATTTGGATTTTTTTATTTTAAGTTTTG
AATGTGAAGCTGTTACAGGCTGTTAGCATACAGGCTACAAAGTCATTACT
TTTTTTACAAGATAATCAAAGTATCTACTATTTTAGTATTTCGACCCTAC
AAATGGTATTGTTTTTATTGTCAATGCAACGATTTGGTTCCATCCTTCGA
CTTACTAAATGATCAAAGGTATTACCTCTCTCCATTTGTTGTTTTAGATT
CTACCAGGAAACCGAGATGGAACAACCATAGCGTCCAACATTGTCGACCT
TCGTGCACAATACATTCGTCTGATACCGAAATCGTTCAAAGGAACATACA
TGTACCTGAGAAGTTGTGGTTGTCCCTCAGGTAAACTCACTTTTCCTGTA
TTAACAAAACCACGAAAATCAAACATTTTAAAAAGATAAGAATTTGATTT
GGACCAAAATTTAGCAAAAGCTGACCAGAGAATGATTCGAATAATGCGGT
TGGCATCCTCACTGCAAGATATTGTACTTATTTTGCTATACCCATTGAAA
TTTCTGACTTAAAAACATAAGATAACCAGGAATACCCAGAAATCCATCTA
TAGATAACCAAGATTTGAATTCAAGTAATTCTTTTTTACTGCAATGATGA
TGAAACGCAATGAATGAGAAACCCTGGAGATTGTTAAGAGATGGAGAAAC
AGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003360-exon-sc0000026-1575043694:839857..839991 | TCONS_00003360-exon-sc0000026-1575043694:839857..839991 | Clytia hemisphaerica | exon |
| TCONS_00003360-exon-sc0000026-1575043694:835395..835559 | TCONS_00003360-exon-sc0000026-1575043694:835395..835559 | Clytia hemisphaerica | exon |
| TCONS_00003360-exon-sc0000026-1575043694:834689..835144 | TCONS_00003360-exon-sc0000026-1575043694:834689..835144 | Clytia hemisphaerica | exon |
| TCONS_00003360-exon-sc0000026-1510915933:839857..839991 | TCONS_00003360-exon-sc0000026-1510915933:839857..839991 | Clytia hemisphaerica | exon |
| TCONS_00003360-exon-sc0000026-1510915933:835395..835559 | TCONS_00003360-exon-sc0000026-1510915933:835395..835559 | Clytia hemisphaerica | exon |
| TCONS_00003360-exon-sc0000026-1510915933:834689..835144 | TCONS_00003360-exon-sc0000026-1510915933:834689..835144 | Clytia hemisphaerica | exon |
| TCONS_00003360-exon-sc0000026-1491911889:839857..839991 | TCONS_00003360-exon-sc0000026-1491911889:839857..839991 | Clytia hemisphaerica | exon |
| TCONS_00003360-exon-sc0000026-1491911889:835395..835559 | TCONS_00003360-exon-sc0000026-1491911889:835395..835559 | Clytia hemisphaerica | exon |
| TCONS_00003360-exon-sc0000026-1491911889:834689..835144 | TCONS_00003360-exon-sc0000026-1491911889:834689..835144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:834689..839991 - |
Blast
The following BLAST results are available for this feature:
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