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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003354 ID=TCONS_00003354|Name=TCONS_00003354|organism=Clytia hemisphaerica|type=transcript|length=1118bp
TTTCTGATTGGCTGAATTCATTCCTCCTtgaattctgattggtcgaTTGT
CATTGTTGTTCAATTCTAATTGGTTAATCACATGATTTGTACCTTCTGAT
TGGCTGATTCATTCCACCATTCTTGAATTCTGATTGGTTAATTATCATTA
CTGCTTAATTCTAATTGGTTCATCATGGAAGATCACATTACACaggagaa
attgaaaaattacaatCAAACTTTCCAAACTTTGGATACGGACAATAAAG
GGTTTTTAAAACCCAAAATGATACGACAAGCGTTGAAGCACGTCGGTTTC
AACCCCACTGAAAATGAACTAGAAGAAAGCTTGATAGTtattgatgaaaa
tgaaaataaccgAATTGAACttgaagaatttttgaaattaactTCGCAAC
TAGAATCAAAGACTAAAGCAAAAAAAGAAGcacGTGATTCGTTCAACGCG
TTCGACTTTCTTGGTGAAGGATTTGTAGCAGCCAACGATTTAAAAGAAGC
TTTGTTTTACATCATGGAGAAAGCTTCAGAAGAGGATAAACAAAATATCG
TCAAACATTTCAAactgGAGAAAAATCGTAAAATCGAATTCGAAGAATTC
AAGGAGATGattatcatgaaaaaataacgccCACCTCCTCCTCCCTCATT
CAAATACGCCCTTTCACCCTGCATATCATATTTTCGCAGATTTTTAGTAT
AAAAGTGATAAAAGAACTGAAGCGTGAATGTATTCAACCATGTTGCGTGA
TAAAGTCATTTTGATGTCGttggttttgaaattcttaTCAGTACGATGGG
TTCTTCCTAAAAGATTCCGACATCGGTTGAAGATATAACATTTTTCAGGA
GTTGACTCCGGATATGAGAATTCAGAACCATCCCCAGGCTAAGAACTTTC
GGACAACCAGTCTGAAATCCTTGGTTTATACTTACACAAATGATAATCAG
TCAtatgtaaatatattttttgttacCGTTTAACTGGAAATAATTATTGT
AGATTTTgtaaaattaatgttttttctgataaaTTAACATTCACAATTTG
TTAAATAAATCTATGATCCGAAACTTAAATTCTTTGAATCTACAATTTAG
AAAAGTTCATTAGGGTTA Run BLAST on NCBI transcript from alignment at sc0000026:776353..780087- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003354 ID=TCONS_00003354|Name=TCONS_00003354|organism=Clytia hemisphaerica|type=transcript|length=3735bp|location=Sequence derived from alignment at sc0000026:776353..780087- (Clytia hemisphaerica)
TTTCTGATTGGCTGAATTCATTCCTCCTTGAATTCTGATTGGTCGATTGT
CATTGTTGTTCAATTCTAATTGGTTAATCACATGATTTGTACCTTCTGAT
TGGCTGATTCATTCCACCATTCTTGAATTCTGATTGGTTAATTATCATTA
CTGCTTAATTCTAATTGGTTCATCATGGAAGATCACATTACACAGGAGAA
ATTGAAAAATTACAATCAAACTTTCCAAACTTTGGATACGGACAATAAAG
GGTTTTTAAAACCCAAAATGATACGACAAGCGTTGAAGCACGTCGGTTTC
AACCCCACTGAAAATGAACTAGAAGAAAGCTTGATAGTTATTGATGAAAA
TGAAAATAACCGAATTGAACTTGAAGAATTTTTGAAATTAACTTCGCAAC
TAGAATCAAAGACTAAAGCAAAAAAAGAAGGTATTATCAGTGTTTAATAT
TGAAAGTTCTATCTGCTCAGATGACGGGTTTTTGTCTCAGGAAAGTATAG
AAATAGGCCTGTCCGTCTCAAAATTTTGCAAAATTTTTAACAAACACGGT
AAAATTTCCTGCGAAAATTCCCTTCTTAGCTCGAAAAATTTGCTTTGACC
ACTCACTGTACAAAATTTAAGTTTATTTATAACTCCCTGGTTTCCTAAAA
GATAGGAACAACTTAATAAATTTGTGTGTGAGGTTTTCATAAGTCAGAGC
GCATGTCTCCGTTAAAACGAGATCAAGACTTTTTATCAATCGAGATCGAG
ATTTTCAAACCTCAAATCTTTTTCGTCATTTTGTCCAATTAAATAGGATT
TTAGGTTGGATATCAAACGAAAAAGTTCCTCCTGAAAGTTTGTTTTTAAG
TGAAATCCTTTTTTGTGTTTTGGTAGATTTGTGGGCTCAGGAAACTACCC
CATGGTCACACTCGCCGATTGATTCAATAAATACTCTGCGAAAGCTTTAT
TTTAAACAGTTTGACCATGACAGGCTTGTTTATCAAATGTGCCAAAAATG
ATAAAATTCTATTTCATGGAAGAAAAAAAACTGTCGATTGATATAAAATT
GTTTGCAATATTTTTGACTAAGTTAACACTTTATTCAATGCTTTATGCTG
TAAATTTGTTTCCTAAATTAGAGTTTTTGACTGAGCTTTGATTTAAATGA
TTCAGAAATTTAGCACGCATTTTCAATCGGTGCTTCATCGTAAAATTTGT
GCTTAACAGTTTTCTTGAATAAATGAACTGCGTAAACTTAATGATTTAAA
ATCATTCTCGAAACCATTGATTCGAAAACGTTAGTTAAGCTTAAAAAAAT
GTCTGCCTTGTATTAGCGAAAAAGATTGCAAAGAGGTGGACAGAAAGACG
TAGTTAGACCGACATACTTTAAAGATCTTAAACTAAATTTATTCCCGATA
AAAACATTTTCTGGTATTTACACCGAGCATTGTGGAAGTCTTATCACACG
ATTCAATCAATTAGTTGAGAGATATTCGGTATCGCGATTTCAAGAATTTT
TACGACGCTAAGAAAGGGAAGCAGAGGATTGTTTTAAATTTTGGAAATTT
TCGTTAAGATGGTCAACATAACTTTAAGCGAAGAACAAAAGCGAGAATAC
CATGATTGTTTTTGTTTGTTTGAGAAAAATCGTGGTTTTATTAAGCAAGA
TCAAGTTCGAGATTGTTTACGTCATGTTGGTTTCAACCCAACCGATTCAC
TCCTACAAAATTTACAATGGGAGCTTGATAGTAGTGAGCAGGGTCGGTTA
GGATTTAAGGAATTTCTTGAATTGATTACGAGGCTACTGCAGGAAATGGA
CCAGGCTAAAGAAGGTTGGTTGCCAAAAAGATTGGGAAAAGAAAACGTAA
ATTTAGGATACGCTATATAATGATCTTTACCTCAACGATTACTGCGGAAA
TTTTAAATCTGATATATCTGATATATCCGTTAATTTCTGCAATCTTTTTA
ATTGCGTACCTTTTTTCCCGCGCATGATTTAAAGAAGGATATTCGTAAAT
CTCGAATTATGCCGGCCCCGGAACAAGCCTTACAGAAATCTGAGCTAAAA
TCTGGCCAAACTCAAGAGGATTTTCAAAAATTGGGAAAGGCATTGTATCA
AAACTTTCGCTCAGTTTGCGTTGATAATTTTAAACATCAAGAAAATTGAT
ACACGTGTAGATCACCTTTAATAGATGTATTAGGGAGATGTATTAAAACG
AGGAGTAATATTTACAGATTGGTTACTTTTGTCAGATGAGTTCCTTATGA
TGATAAAGCCTCGTATTGGAGAAGATATAGAGATTACACACTTGGAACAA
TGAAAAACTAATCTACGTATTTTTTAGCGGGAAAGGTTAAGTGTAGAAAT
ATATTCTAACCTAGCCTAATTATTTTTCTTTTTTAGCACGTGATTCGTTC
AACGCGTTCGACTTTCTTGGTGAAGGATTTGTAGCAGCCAACGATTTAAA
AGAAGCTTTGTTTTACATCATGGAGAAAGCTTCAGAAGAGGATAAACAAA
ATATCGTCAAACATTTCAAGTGAGTGATGGTGTTTTTTAAACAAAACCAG
TCTTCACGAAATTTGGAAAATTATTAAGTTAAAGGTTTTGTTTTTAAATA
AGAGTGAAATCGTTTGCATACTCGTCAATTTTAATTCACAAGCTTTTTCA
CATTGGATTGACACGTATGTGGAGCAATATTGATCAGAAAGAGGAAAAGA
AAAACAAATTTTTGCTTATATCAGCATATAACAATAGGCAGACGCACTGT
CCTGATATGAAATATGTGTCTGATATAAAGCGAGAACACTTATATGTAAA
ATGCCACATTCTGATTTATGGGGCAAAAGTATTTTAGGCTTTTCACCGAC
CCTTTAATCCTTAAAACACCCAGTCTCAGTATTGTTTTAAAATTGTTCTT
ATTTTTTGAAGATTTTGAGCCTCCTTGTTCTTATAAAGTTACTCTCATAA
AAAGAGAGAGTTAATCTCATAAAAAGAGAGTTTACGCGTATAAGAAAAAT
GGTGAAACCGTCTGGCTAGCAAAAATAGCTGATCTATCGATATTCGCTTT
GAAGGCTAAGGGCGTCAGATATCATCGAAAGATGCACACTCGCTGAGATT
TCCAATACCATATCAGGTTAGTTGCACTTTACATCAGAAAGAATTTAACT
TTTTAACGGTTTTTACTTTTTATTTTTTAGACTGGAGAAAAATCGTAAAA
TCGAATTCGAAGAATTCAAGGAGATGATTATCATGAAAAAATAACGCCCA
CCTCCTCCTCCCTCATTCAAATACGCCCTTTCACCCTGCATATCATATTT
TCGCAGATTTTTAGTATAAAAGTGATAAAAGAACTGAAGCGTGAATGTAT
TCAACCATGTTGCGTGATAAAGTCATTTTGATGTCGTTGGTTTTGAAATT
CTTATCAGTACGATGGGTTCTTCCTAAAAGATTCCGACATCGGTTGAAGA
TATAACATTTTTCAGGAGTTGACTCCGGATATGAGAATTCAGAACCATCC
CCAGGCTAAGAACTTTCGGACAACCAGTCTGAAATCCTTGGTTTATACTT
ACACAAATGATAATCAGTCATATGTAAATATATTTTTTGTTACCGTTTAA
CTGGAAATAATTATTGTAGATTTTGTAAAATTAATGTTTTTTCTGATAAA
TTAACATTCACAATTTGTTAAATAAATCTATGATCCGAAACTTAAATTCT
TTGAATCTACAATTTAGAAAAGTTCATTAGGGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003354-exon-sc0000026-1575043694:779658..780087 | TCONS_00003354-exon-sc0000026-1575043694:779658..780087 | Clytia hemisphaerica | exon |
| TCONS_00003354-exon-sc0000026-1575043694:777569..777701 | TCONS_00003354-exon-sc0000026-1575043694:777569..777701 | Clytia hemisphaerica | exon |
| TCONS_00003354-exon-sc0000026-1575043694:776353..776907 | TCONS_00003354-exon-sc0000026-1575043694:776353..776907 | Clytia hemisphaerica | exon |
| TCONS_00003354-exon-sc0000026-1510915933:779658..780087 | TCONS_00003354-exon-sc0000026-1510915933:779658..780087 | Clytia hemisphaerica | exon |
| TCONS_00003354-exon-sc0000026-1510915933:777569..777701 | TCONS_00003354-exon-sc0000026-1510915933:777569..777701 | Clytia hemisphaerica | exon |
| TCONS_00003354-exon-sc0000026-1510915933:776353..776907 | TCONS_00003354-exon-sc0000026-1510915933:776353..776907 | Clytia hemisphaerica | exon |
| TCONS_00003354-exon-sc0000026-1491911889:779658..780087 | TCONS_00003354-exon-sc0000026-1491911889:779658..780087 | Clytia hemisphaerica | exon |
| TCONS_00003354-exon-sc0000026-1491911889:777569..777701 | TCONS_00003354-exon-sc0000026-1491911889:777569..777701 | Clytia hemisphaerica | exon |
| TCONS_00003354-exon-sc0000026-1491911889:776353..776907 | TCONS_00003354-exon-sc0000026-1491911889:776353..776907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:776353..780087 - |
Blast
BLAST of TCONS_00003354 vs. Swiss-Prot (Human)
Match: CALL3 (Calmodulin-like protein 3 OS=Homo sapiens GN=CALML3 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 4.311e-16 Identity = 37/127 (29.13%), Postives = 71/127 (55.91%), Query Frame = 1
Query: 175 MEDHITQEKLKNYNQTFQTLDTDNKGFLKPKMIRQALKHVGFNPTENELEESLIVIDENENNRIELEEFLKLTSQLESKTKAKKEARDSFNAFDFLGEGFVAANDLKEALFYIMEKASEEDKQNIVK 555
M D +T+E++ + + F D D G + + + ++ +G NPTE EL + + ID + N ++ EFL + ++ T ++E R++F FD G GFV+A +L+ + + EK S+E+ +++
Sbjct: 1 MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIR 127
The following BLAST results are available for this feature:
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