Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003337 ID=TCONS_00003337|Name=TCONS_00003337|organism=Clytia hemisphaerica|type=transcript|length=2692bp
caaatattttttttccaaaatggcgaCCTAATgcttctagtctacttcac
tgaactcagcgtcataaaaaattaaagTTCAGCCAggagtagactctagt
ctagttgAAAACAGGCATGCGAAGATCTTAGATTTGATGTACTTTCTAAG
GAAAATCTATCAAAATGATTATTATTCTATTTTCTTTGTGCAGGGAAAAG
TGTGTGGTTTTGATAGTGTTACATACCAAAACGAATGTGAGGCTTTCGAG
TCCGGAACAGGTGTCGATTACCGTGGTTCATGTATACCGGAAAACATCCG
GACATCAGCAACCACATCGTCCAAAGAACGTTGCAGGAACGTCCAGTGTG
AACCGATTATTGGTGATAATTGTNTTCGTCCAAAGAACGTTGTAGGAACG
TCCAGTGTGAACCAATTATTGGTGATAATTGTGATTTGTTTACACCGCCC
GGTTCATGCTGTCCGAAATGTGGTTCGATGTTGCGACTGTTGTACAGCAA
ACAAGATCTAGAGAAACATAAGCAATACATTAGCCTGGAACCTATTACAG
TTAAAGAATTGGTGAAGCGGCTAAGAGAACAACTTAAAGTGGCGGAGTGT
CAAGTACACGGTCACCTTACTGTAGAGAACGATCTCCTCGTCATGCTATT
GGTCGATTCACAAAAGCCAACACGTGACCAAATAACAGCGTGTCGAACGG
AAGCGCAGCGTTTTCACAAATATATAAACAACAGTAGTCCTATTACACAG
ACTAATTACTATCTGTCGTTGTTGAAAGCGTCAGATTTACAGACTGTCGA
ATTTCATTCACCTTCTTCAGCCAATATGTTGAAGATGGGTACAAAACACT
TGTTGAGTTTAGTAATTCTTTGTTGGCTATCAAcgcttgtgacgtcatat
ctTGTATCTGGTGGAACGAGGTAGTATTGGGTGGTTTTGGATAATGacct
ttttatattttattcttttctctcgTTCAAATTTAATCTTCCTTCCTTCA
TTTATCCTTCGTtgcttttttaaaagttttttaaactcatgttacatgtt
tttttacagCGTCAAGGCTTCTTAAAGAGCTgattttttcagcattttat
gAGTCAGAATTGTTATCTAATGCATGTGTCGAGTCtacaaaatgttctta
atttgctgacctcgaagccttatgttcttacgtAAAAACATGTATTCATG
ACTTACTTTCTTATACAGAAACACTCGAAAAACACCGGGCGTAAAAGGGG
TGGTAATAGGCGTTGCCACTAGCTTTATAGTTTACCGTAGTTACGGGTGT
CTTTCCAAGAATTCGGAAACCTTCCTTTCGAGTTTTCTCGTAtaatttcc
ttttctttttctcgtTAATATTTTTGTGGATTTGTATATTGTGAATAGTT
AtagagaaatttaaaaatttgttgCCCCTAACAGAAGaactttttgttta
tatttttattgcagaaagttcaaatttgttttttgaaaaatgatattttc
taaccttttacgtatatgaaagatttttttgccaccgtgaaattattttt
ttaaatactagATAATTTTACGGACAATTTTATATTCATGGGTGTCCGAA
GTTTTTTTGTCCgaaaaagcgtttttttcatttgctgcaTAGCGTGTATC
ATGCTCATtatcacgtgatcaaaaatgaaaattattgcgaaattttaaaa
tctttcttttttttgtttgccgCTATTGTTTTACATAGAGAGCAAGCAAT
GCTGAATTATGAATAAACGTTTCAAACGTAAACTGAAAAATCAATCTTGA
AAGAAGCCGGTCAATCGGATGTTTGGGATAGTtcgaaacaaaatttttta
gtGTTTTACCCTTCGCTTCTTGCTGGTGTATAAAAGGCTTTAATAGTGCT
TTTTGATGGAGATTAGAGTAGTGTCTAACACAAACACGAACACGCCTTCC
AGGGTTGAAAATACACTGGGGACGAGGTTTTATTTTGTAGTCgattcgct
ttaagtgtgcacttaTTTTAGCTAGCAGGTGGAAACCAACCTCAAGAGAT
TCTCTCTTGTTAAACTGACTTGGTTTCCACAGTCATGACAGAAAAAAAAG
ATTGCACACTTAAAGCAAATGGATTTTACTTAAAGCGTCCGAAAATAAGA
CATTCAGAAAATGCCGGACACTTTAACAATAAATTGACTTTATAATTAAT
AGATTGCATTACTTATAGATATTATAACAGAGATAATTTATTTCATATCA
TTGTGCTTTTTCGCACACAACCCTTGGACTAAAAAAAGTGCTTTTAAACG
TTACAAAGTTTAAGCCCCAATCAAATTTGTCCTTttaattcgaatatttt
ctaaaacttctCTCGCTTCCCTTGAGCGCtgattggtttgttttttttaa
tttgaccaATCAGATTGATTGTAAAGTTTGAGCGGGTGGGTTTACGCTTA
AACGTAACCCatacatttttaggcttttaagaAGACAGGCAAGCACTATG
TAAGGTTTAGTCACAGTTGGCCTAATTATCTACTTATCTTTAATAGTTCT
TCTAAAAGAAATGTATATAGATTTTATTTCAACtttattataaacaaaaa
taatgtaTATAAATTCGTATTTGTAGTATGTAGTAAAATCAAATACCTTC
GTTAAAAAAAATATGACTTTCCtaataaaaactgaaaattta Run BLAST on NCBI protein sequence of TCONS_00003337-protein >TCONS_00003337-protein ID=TCONS_00003337-protein|Name=TCONS_00003337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MLRLLYSKQDLEKHKQYISLEPITVKELVKRLREQLKVAECQVHGHLTVE
NDLLVMLLVDSQKPTRDQITACRTEAQRFHKYINNSSPITQTNYYLSLLK
ASDLQTVEFHSPSSANMLKMGTKHLLSLVILCWLSTLVTSYLVSGGTR Run BLAST on NCBI transcript from alignment at sc0000026:358985..361980- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003337 ID=TCONS_00003337|Name=TCONS_00003337|organism=Clytia hemisphaerica|type=transcript|length=2996bp|location=Sequence derived from alignment at sc0000026:358985..361980- (Clytia hemisphaerica)
CAAATATTTTTTTTCCAAAATGGCGACCTAATGCTTCTAGTCTACTTCAC
TGAACTCAGCGTCATAAAAAATTAAAGTTCAGCCAGGAGTAGACTCTAGT
CTAGTTGAAAACAGGCATGCGAAGATCTTAGATTTGATGTACTTTCTAAG
GAAAATCTATCAAAATGATTATTATTCTATTTTCTTTGTGCAGGGAAAAG
TGTGTGGTTTTGATAGTGTTACATACCAAAACGAATGTGAGGCTTTCGAG
TCCGGAACAGGTGTCGATTACCGTGGTTCATGTATACCGGAAAACATCCG
GACATCAGCAACCACATCGTCCAAAGAACGTTGCAGGAACGTCCAGTGTG
AACCGATTATTGGTGATAATTGTNTTCGTCCAAAGAACGTTGTAGGAACG
TCCAGTGTGAACCAATTATTGGTGATAATTGTGATTTGTTTACACCGCCC
GGTTCATGCTGTCCGAAATGTGGTTCGATGTTGCGACTGTTGTACAGCAA
ACAAGATCTAGAGAAACATAAGCAATACATTAGCCTGGAACCTATTACAG
TTAAAGAATTGGTGAAGCGGCTAAGAGAACAACTTAAAGTGGTAAGTGAG
ATGTTTACCTTTCCAATGAATCGCAAACAATGTCAGAACAAAATTGTTCG
GTGATGCAGTTAACTGCAGCCCTTTCAGGAAGGTTCTGAATAAGATTGTG
TGTCTGGATTTATAAGAAGTTATAGTCAGTTGACGCAATATAACCAACCG
CGGCGTGAGGCTAATATGGTTTAAAATTATCCTAATAGTGGTATAAATAG
TATATATTTCTCTCAAAAGTGACTCCTTTGGTCTTGGGTTTCTTTGAAGC
TTGTATCCTAACCTGACTTTCAACACTTTTTTTCTTTCATTACAGGCGGA
GTGTCAAGTACACGGTCACCTTACTGTAGAGAACGATCTCCTCGTCATGC
TATTGGTCGATTCACAAAAGCCAACACGTGACCAAATAACAGCGTGTCGA
ACGGAAGCGCAGCGTTTTCACAAATATATAAACAACAGTAGTCCTATTAC
ACAGACTAATTACTATCTGTCGTTGTTGAAAGCGTCAGATTTACAGACTG
TCGAATTTCATTCACCTTCTTCAGCCAATATGTTGAAGATGGGTACAAAA
CACTTGTTGAGTTTAGTAATTCTTTGTTGGCTATCAACGCTTGTGACGTC
ATATCTTGTATCTGGTGGAACGAGGTAGTATTGGGTGGTTTTGGATAATG
ACCTTTTTATATTTTATTCTTTTCTCTCGTTCAAATTTAATCTTCCTTCC
TTCATTTATCCTTCGTTGCTTTTTTAAAAGTTTTTTAAACTCATGTTACA
TGTTTTTTTACAGCGTCAAGGCTTCTTAAAGAGCTGATTTTTTCAGCATT
TTATGAGTCAGAATTGTTATCTAATGCATGTGTCGAGTCTACAAAATGTT
CTTAATTTGCTGACCTCGAAGCCTTATGTTCTTACGTAAAAACATGTATT
CATGACTTACTTTCTTATACAGAAACACTCGAAAAACACCGGGCGTAAAA
GGGGTGGTAATAGGCGTTGCCACTAGCTTTATAGTTTACCGTAGTTACGG
GTGTCTTTCCAAGAATTCGGAAACCTTCCTTTCGAGTTTTCTCGTATAAT
TTCCTTTTCTTTTTCTCGTTAATATTTTTGTGGATTTGTATATTGTGAAT
AGTTATAGAGAAATTTAAAAATTTGTTGCCCCTAACAGAAGAACTTTTTG
TTTATATTTTTATTGCAGAAAGTTCAAATTTGTTTTTTGAAAAATGATAT
TTTCTAACCTTTTACGTATATGAAAGATTTTTTTGCCACCGTGAAATTAT
TTTTTTAAATACTAGATAATTTTACGGACAATTTTATATTCATGGGTGTC
CGAAGTTTTTTTGTCCGAAAAAGCGTTTTTTTCATTTGCTGCATAGCGTG
TATCATGCTCATTATCACGTGATCAAAAATGAAAATTATTGCGAAATTTT
AAAATCTTTCTTTTTTTTGTTTGCCGCTATTGTTTTACATAGAGAGCAAG
CAATGCTGAATTATGAATAAACGTTTCAAACGTAAACTGAAAAATCAATC
TTGAAAGAAGCCGGTCAATCGGATGTTTGGGATAGTTCGAAACAAAATTT
TTTAGTGTTTTACCCTTCGCTTCTTGCTGGTGTATAAAAGGCTTTAATAG
TGCTTTTTGATGGAGATTAGAGTAGTGTCTAACACAAACACGAACACGCC
TTCCAGGGTTGAAAATACACTGGGGACGAGGTTTTATTTTGTAGTCGATT
CGCTTTAAGTGTGCACTTATTTTAGCTAGCAGGTGGAAACCAACCTCAAG
AGATTCTCTCTTGTTAAACTGACTTGGTTTCCACAGTCATGACAGAAAAA
AAAGATTGCACACTTAAAGCAAATGGATTTTACTTAAAGCGTCCGAAAAT
AAGACATTCAGAAAATGCCGGACACTTTAACAATAAATTGACTTTATAAT
TAATAGATTGCATTACTTATAGATATTATAACAGAGATAATTTATTTCAT
ATCATTGTGCTTTTTCGCACACAACCCTTGGACTAAAAAAAGTGCTTTTA
AACGTTACAAAGTTTAAGCCCCAATCAAATTTGTCCTTTTAATTCGAATA
TTTTCTAAAACTTCTCTCGCTTCCCTTGAGCGCTGATTGGTTTGTTTTTT
TTAATTTGACCAATCAGATTGATTGTAAAGTTTGAGCGGGTGGGTTTACG
CTTAAACGTAACCCATACATTTTTAGGCTTTTAAGAAGACAGGCAAGCAC
TATGTAAGGTTTAGTCACAGTTGGCCTAATTATCTACTTATCTTTAATAG
TTCTTCTAAAAGAAATGTATATAGATTTTATTTCAACTTTATTATAAACA
AAAATAATGTATATAAATTCGTATTTGTAGTATGTAGTAAAATCAAATAC
CTTCGTTAAAAAAAATATGACTTTCCTAATAAAAACTGAAAATTTA Coding sequence (CDS) from alignment at sc0000026:358985..361980- >TCONS_00003337 ID=TCONS_00003337|Name=TCONS_00003337|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at sc0000026:358985..361980- (Clytia hemisphaerica)
GCGGAGTGTCAAGTACACGGTCACCTTACTGTAGAGAACGATCTCCTCGT
CATGCTATTGGTCGATTCACAAAAGCCAACACGTGACCAAATAACAGCGT
GTCGAACGGAAGCGCAGCGTTTTCACAAATATATAAACAACAGTAGTCCT
ATTACACAGACTAATTACTATCTGTCGTTGTTGAAAGCGTCAGATTTACA
GACTGTCGAATTTCATTCACCTTCTTCAGCCAATATGTTGAAGATGGGTA
CAAAACACTTGTTGAGTTTAGTAATTCTTTGTTGGCTATCAACGCTTGTG
ACGTCATATCTTGTATCTGGTGGAACGAGGTAGATGTTGCGACTGTTGTA
CAGCAAACAAGATCTAGAGAAACATAAGCAATACATTAGCCTGGAACCTA
TTACAGTTAAAGAATTGGTGAAGCGGCTAAGAGAACAACTTAAAGTGGCG
GAGTGTCAAGTACACGGTCACCTTACTGTAGAGAACGATCTCCTCGTCAT
GCTATTGGTCGATTCACAAAAGCCAACACGTGACCAAATAACAGCGTGTC
GAACGGAAGCGCAGCGTTTTCACAAATATATAAACAACAGTAGTCCTATT
ACACAGACTAATTACTATCTGTCGTTGTTGAAAGCGTCAGATTTACAGAC
TGTCGAATTTCATTCACCTTCTTCAGCCAATATGTTGAAGATGGGTACAA
AACACTTGTTGAGTTTAGTAATTCTTTGTTGGCTATCAACGCTTGTGACG
TCATATCTTGTATCTGGTGGAACGAGGTAGATGTTGCGACTGTTGTACAG
CAAACAAGATCTAGAGAAACATAAGCAATACATTAGCCTGGAACCTATTA
CAGTTAAAGAATTGGTGAAGCGGCTAAGAGAACAACTTAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003337-exon-sc0000026-1575043694:361390..361980 | TCONS_00003337-exon-sc0000026-1575043694:361390..361980 | Clytia hemisphaerica | exon |
| TCONS_00003337-exon-sc0000026-1575043694:358985..361085 | TCONS_00003337-exon-sc0000026-1575043694:358985..361085 | Clytia hemisphaerica | exon |
| TCONS_00003337-exon-sc0000026-1510915933:361390..361980 | TCONS_00003337-exon-sc0000026-1510915933:361390..361980 | Clytia hemisphaerica | exon |
| TCONS_00003337-exon-sc0000026-1510915933:358985..361085 | TCONS_00003337-exon-sc0000026-1510915933:358985..361085 | Clytia hemisphaerica | exon |
| TCONS_00003337-exon-sc0000026-1491911889:361390..361980 | TCONS_00003337-exon-sc0000026-1491911889:361390..361980 | Clytia hemisphaerica | exon |
| TCONS_00003337-exon-sc0000026-1491911889:358985..361085 | TCONS_00003337-exon-sc0000026-1491911889:358985..361085 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:358985..361980 - |
Blast
BLAST of TCONS_00003337 vs. Swiss-Prot (Human)
Match: RECK (Reversion-inducing cysteine-rich protein with Kazal motifs OS=Homo sapiens GN=RECK PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.958e-21 Identity = 49/149 (32.89%), Postives = 86/149 (57.72%), Query Frame = 1 Query: 376 SSKERCRNVQCEPIIGDNCDLFTPPGSCCPKCGSMLRLLYSKQDLEKHKQYISLEPITVKELVKRLREQLKVAECQVHGHLTVENDLLVMLLVDSQKPTRDQITACRTEAQRFHKYINNSSPITQTNYYLSLLKASDLQTVEFHSPSSA 822
SS C +V+C ++ C PPG+CCP C MLR+L+ K+ L+ + + +PITV E+++++R + V +C V G+ ++E++++++++ P QI AC EA++ IN+ SP ++ LS L S +Q V PS+
Sbjct: 797 SSVAECASVKCPSLLAAGCKPIIPPGACCPLCAGMLRVLFDKEKLDTIAKVTNKKPITVLEILQKIRMHVSVPQCDVFGYFSIESEIVILIIPVDHYPKALQIEACNKEAEKIESLINSDSPTLASHVPLSALIISQVQ-VSSSVPSAG 944
The following BLAST results are available for this feature:
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