TCONS_00003337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003337
Unique NameTCONS_00003337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003337 ID=TCONS_00003337|Name=TCONS_00003337|organism=Clytia hemisphaerica|type=transcript|length=2692bp
caaatattttttttccaaaatggcgaCCTAATgcttctagtctacttcac
tgaactcagcgtcataaaaaattaaagTTCAGCCAggagtagactctagt
ctagttgAAAACAGGCATGCGAAGATCTTAGATTTGATGTACTTTCTAAG
GAAAATCTATCAAAATGATTATTATTCTATTTTCTTTGTGCAGGGAAAAG
TGTGTGGTTTTGATAGTGTTACATACCAAAACGAATGTGAGGCTTTCGAG
TCCGGAACAGGTGTCGATTACCGTGGTTCATGTATACCGGAAAACATCCG
GACATCAGCAACCACATCGTCCAAAGAACGTTGCAGGAACGTCCAGTGTG
AACCGATTATTGGTGATAATTGTNTTCGTCCAAAGAACGTTGTAGGAACG
TCCAGTGTGAACCAATTATTGGTGATAATTGTGATTTGTTTACACCGCCC
GGTTCATGCTGTCCGAAATGTGGTTCGATGTTGCGACTGTTGTACAGCAA
ACAAGATCTAGAGAAACATAAGCAATACATTAGCCTGGAACCTATTACAG
TTAAAGAATTGGTGAAGCGGCTAAGAGAACAACTTAAAGTGGCGGAGTGT
CAAGTACACGGTCACCTTACTGTAGAGAACGATCTCCTCGTCATGCTATT
GGTCGATTCACAAAAGCCAACACGTGACCAAATAACAGCGTGTCGAACGG
AAGCGCAGCGTTTTCACAAATATATAAACAACAGTAGTCCTATTACACAG
ACTAATTACTATCTGTCGTTGTTGAAAGCGTCAGATTTACAGACTGTCGA
ATTTCATTCACCTTCTTCAGCCAATATGTTGAAGATGGGTACAAAACACT
TGTTGAGTTTAGTAATTCTTTGTTGGCTATCAAcgcttgtgacgtcatat
ctTGTATCTGGTGGAACGAGGTAGTATTGGGTGGTTTTGGATAATGacct
ttttatattttattcttttctctcgTTCAAATTTAATCTTCCTTCCTTCA
TTTATCCTTCGTtgcttttttaaaagttttttaaactcatgttacatgtt
tttttacagCGTCAAGGCTTCTTAAAGAGCTgattttttcagcattttat
gAGTCAGAATTGTTATCTAATGCATGTGTCGAGTCtacaaaatgttctta
atttgctgacctcgaagccttatgttcttacgtAAAAACATGTATTCATG
ACTTACTTTCTTATACAGAAACACTCGAAAAACACCGGGCGTAAAAGGGG
TGGTAATAGGCGTTGCCACTAGCTTTATAGTTTACCGTAGTTACGGGTGT
CTTTCCAAGAATTCGGAAACCTTCCTTTCGAGTTTTCTCGTAtaatttcc
ttttctttttctcgtTAATATTTTTGTGGATTTGTATATTGTGAATAGTT
AtagagaaatttaaaaatttgttgCCCCTAACAGAAGaactttttgttta
tatttttattgcagaaagttcaaatttgttttttgaaaaatgatattttc
taaccttttacgtatatgaaagatttttttgccaccgtgaaattattttt
ttaaatactagATAATTTTACGGACAATTTTATATTCATGGGTGTCCGAA
GTTTTTTTGTCCgaaaaagcgtttttttcatttgctgcaTAGCGTGTATC
ATGCTCATtatcacgtgatcaaaaatgaaaattattgcgaaattttaaaa
tctttcttttttttgtttgccgCTATTGTTTTACATAGAGAGCAAGCAAT
GCTGAATTATGAATAAACGTTTCAAACGTAAACTGAAAAATCAATCTTGA
AAGAAGCCGGTCAATCGGATGTTTGGGATAGTtcgaaacaaaatttttta
gtGTTTTACCCTTCGCTTCTTGCTGGTGTATAAAAGGCTTTAATAGTGCT
TTTTGATGGAGATTAGAGTAGTGTCTAACACAAACACGAACACGCCTTCC
AGGGTTGAAAATACACTGGGGACGAGGTTTTATTTTGTAGTCgattcgct
ttaagtgtgcacttaTTTTAGCTAGCAGGTGGAAACCAACCTCAAGAGAT
TCTCTCTTGTTAAACTGACTTGGTTTCCACAGTCATGACAGAAAAAAAAG
ATTGCACACTTAAAGCAAATGGATTTTACTTAAAGCGTCCGAAAATAAGA
CATTCAGAAAATGCCGGACACTTTAACAATAAATTGACTTTATAATTAAT
AGATTGCATTACTTATAGATATTATAACAGAGATAATTTATTTCATATCA
TTGTGCTTTTTCGCACACAACCCTTGGACTAAAAAAAGTGCTTTTAAACG
TTACAAAGTTTAAGCCCCAATCAAATTTGTCCTTttaattcgaatatttt
ctaaaacttctCTCGCTTCCCTTGAGCGCtgattggtttgttttttttaa
tttgaccaATCAGATTGATTGTAAAGTTTGAGCGGGTGGGTTTACGCTTA
AACGTAACCCatacatttttaggcttttaagaAGACAGGCAAGCACTATG
TAAGGTTTAGTCACAGTTGGCCTAATTATCTACTTATCTTTAATAGTTCT
TCTAAAAGAAATGTATATAGATTTTATTTCAACtttattataaacaaaaa
taatgtaTATAAATTCGTATTTGTAGTATGTAGTAAAATCAAATACCTTC
GTTAAAAAAAATATGACTTTCCtaataaaaactgaaaattta
Run BLAST on NCBI

protein sequence of TCONS_00003337-protein

>TCONS_00003337-protein ID=TCONS_00003337-protein|Name=TCONS_00003337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MLRLLYSKQDLEKHKQYISLEPITVKELVKRLREQLKVAECQVHGHLTVE
NDLLVMLLVDSQKPTRDQITACRTEAQRFHKYINNSSPITQTNYYLSLLK
ASDLQTVEFHSPSSANMLKMGTKHLLSLVILCWLSTLVTSYLVSGGTR
Run BLAST on NCBI

transcript from alignment at sc0000026:358985..361980-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003337 ID=TCONS_00003337|Name=TCONS_00003337|organism=Clytia hemisphaerica|type=transcript|length=2996bp|location=Sequence derived from alignment at sc0000026:358985..361980- (Clytia hemisphaerica)
CAAATATTTTTTTTCCAAAATGGCGACCTAATGCTTCTAGTCTACTTCAC
TGAACTCAGCGTCATAAAAAATTAAAGTTCAGCCAGGAGTAGACTCTAGT
CTAGTTGAAAACAGGCATGCGAAGATCTTAGATTTGATGTACTTTCTAAG
GAAAATCTATCAAAATGATTATTATTCTATTTTCTTTGTGCAGGGAAAAG
TGTGTGGTTTTGATAGTGTTACATACCAAAACGAATGTGAGGCTTTCGAG
TCCGGAACAGGTGTCGATTACCGTGGTTCATGTATACCGGAAAACATCCG
GACATCAGCAACCACATCGTCCAAAGAACGTTGCAGGAACGTCCAGTGTG
AACCGATTATTGGTGATAATTGTNTTCGTCCAAAGAACGTTGTAGGAACG
TCCAGTGTGAACCAATTATTGGTGATAATTGTGATTTGTTTACACCGCCC
GGTTCATGCTGTCCGAAATGTGGTTCGATGTTGCGACTGTTGTACAGCAA
ACAAGATCTAGAGAAACATAAGCAATACATTAGCCTGGAACCTATTACAG
TTAAAGAATTGGTGAAGCGGCTAAGAGAACAACTTAAAGTGGTAAGTGAG
ATGTTTACCTTTCCAATGAATCGCAAACAATGTCAGAACAAAATTGTTCG
GTGATGCAGTTAACTGCAGCCCTTTCAGGAAGGTTCTGAATAAGATTGTG
TGTCTGGATTTATAAGAAGTTATAGTCAGTTGACGCAATATAACCAACCG
CGGCGTGAGGCTAATATGGTTTAAAATTATCCTAATAGTGGTATAAATAG
TATATATTTCTCTCAAAAGTGACTCCTTTGGTCTTGGGTTTCTTTGAAGC
TTGTATCCTAACCTGACTTTCAACACTTTTTTTCTTTCATTACAGGCGGA
GTGTCAAGTACACGGTCACCTTACTGTAGAGAACGATCTCCTCGTCATGC
TATTGGTCGATTCACAAAAGCCAACACGTGACCAAATAACAGCGTGTCGA
ACGGAAGCGCAGCGTTTTCACAAATATATAAACAACAGTAGTCCTATTAC
ACAGACTAATTACTATCTGTCGTTGTTGAAAGCGTCAGATTTACAGACTG
TCGAATTTCATTCACCTTCTTCAGCCAATATGTTGAAGATGGGTACAAAA
CACTTGTTGAGTTTAGTAATTCTTTGTTGGCTATCAACGCTTGTGACGTC
ATATCTTGTATCTGGTGGAACGAGGTAGTATTGGGTGGTTTTGGATAATG
ACCTTTTTATATTTTATTCTTTTCTCTCGTTCAAATTTAATCTTCCTTCC
TTCATTTATCCTTCGTTGCTTTTTTAAAAGTTTTTTAAACTCATGTTACA
TGTTTTTTTACAGCGTCAAGGCTTCTTAAAGAGCTGATTTTTTCAGCATT
TTATGAGTCAGAATTGTTATCTAATGCATGTGTCGAGTCTACAAAATGTT
CTTAATTTGCTGACCTCGAAGCCTTATGTTCTTACGTAAAAACATGTATT
CATGACTTACTTTCTTATACAGAAACACTCGAAAAACACCGGGCGTAAAA
GGGGTGGTAATAGGCGTTGCCACTAGCTTTATAGTTTACCGTAGTTACGG
GTGTCTTTCCAAGAATTCGGAAACCTTCCTTTCGAGTTTTCTCGTATAAT
TTCCTTTTCTTTTTCTCGTTAATATTTTTGTGGATTTGTATATTGTGAAT
AGTTATAGAGAAATTTAAAAATTTGTTGCCCCTAACAGAAGAACTTTTTG
TTTATATTTTTATTGCAGAAAGTTCAAATTTGTTTTTTGAAAAATGATAT
TTTCTAACCTTTTACGTATATGAAAGATTTTTTTGCCACCGTGAAATTAT
TTTTTTAAATACTAGATAATTTTACGGACAATTTTATATTCATGGGTGTC
CGAAGTTTTTTTGTCCGAAAAAGCGTTTTTTTCATTTGCTGCATAGCGTG
TATCATGCTCATTATCACGTGATCAAAAATGAAAATTATTGCGAAATTTT
AAAATCTTTCTTTTTTTTGTTTGCCGCTATTGTTTTACATAGAGAGCAAG
CAATGCTGAATTATGAATAAACGTTTCAAACGTAAACTGAAAAATCAATC
TTGAAAGAAGCCGGTCAATCGGATGTTTGGGATAGTTCGAAACAAAATTT
TTTAGTGTTTTACCCTTCGCTTCTTGCTGGTGTATAAAAGGCTTTAATAG
TGCTTTTTGATGGAGATTAGAGTAGTGTCTAACACAAACACGAACACGCC
TTCCAGGGTTGAAAATACACTGGGGACGAGGTTTTATTTTGTAGTCGATT
CGCTTTAAGTGTGCACTTATTTTAGCTAGCAGGTGGAAACCAACCTCAAG
AGATTCTCTCTTGTTAAACTGACTTGGTTTCCACAGTCATGACAGAAAAA
AAAGATTGCACACTTAAAGCAAATGGATTTTACTTAAAGCGTCCGAAAAT
AAGACATTCAGAAAATGCCGGACACTTTAACAATAAATTGACTTTATAAT
TAATAGATTGCATTACTTATAGATATTATAACAGAGATAATTTATTTCAT
ATCATTGTGCTTTTTCGCACACAACCCTTGGACTAAAAAAAGTGCTTTTA
AACGTTACAAAGTTTAAGCCCCAATCAAATTTGTCCTTTTAATTCGAATA
TTTTCTAAAACTTCTCTCGCTTCCCTTGAGCGCTGATTGGTTTGTTTTTT
TTAATTTGACCAATCAGATTGATTGTAAAGTTTGAGCGGGTGGGTTTACG
CTTAAACGTAACCCATACATTTTTAGGCTTTTAAGAAGACAGGCAAGCAC
TATGTAAGGTTTAGTCACAGTTGGCCTAATTATCTACTTATCTTTAATAG
TTCTTCTAAAAGAAATGTATATAGATTTTATTTCAACTTTATTATAAACA
AAAATAATGTATATAAATTCGTATTTGTAGTATGTAGTAAAATCAAATAC
CTTCGTTAAAAAAAATATGACTTTCCTAATAAAAACTGAAAATTTA

Coding sequence (CDS) from alignment at sc0000026:358985..361980-

>TCONS_00003337 ID=TCONS_00003337|Name=TCONS_00003337|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at sc0000026:358985..361980- (Clytia hemisphaerica)
GCGGAGTGTCAAGTACACGGTCACCTTACTGTAGAGAACGATCTCCTCGT
CATGCTATTGGTCGATTCACAAAAGCCAACACGTGACCAAATAACAGCGT
GTCGAACGGAAGCGCAGCGTTTTCACAAATATATAAACAACAGTAGTCCT
ATTACACAGACTAATTACTATCTGTCGTTGTTGAAAGCGTCAGATTTACA
GACTGTCGAATTTCATTCACCTTCTTCAGCCAATATGTTGAAGATGGGTA
CAAAACACTTGTTGAGTTTAGTAATTCTTTGTTGGCTATCAACGCTTGTG
ACGTCATATCTTGTATCTGGTGGAACGAGGTAGATGTTGCGACTGTTGTA
CAGCAAACAAGATCTAGAGAAACATAAGCAATACATTAGCCTGGAACCTA
TTACAGTTAAAGAATTGGTGAAGCGGCTAAGAGAACAACTTAAAGTGGCG
GAGTGTCAAGTACACGGTCACCTTACTGTAGAGAACGATCTCCTCGTCAT
GCTATTGGTCGATTCACAAAAGCCAACACGTGACCAAATAACAGCGTGTC
GAACGGAAGCGCAGCGTTTTCACAAATATATAAACAACAGTAGTCCTATT
ACACAGACTAATTACTATCTGTCGTTGTTGAAAGCGTCAGATTTACAGAC
TGTCGAATTTCATTCACCTTCTTCAGCCAATATGTTGAAGATGGGTACAA
AACACTTGTTGAGTTTAGTAATTCTTTGTTGGCTATCAACGCTTGTGACG
TCATATCTTGTATCTGGTGGAACGAGGTAGATGTTGCGACTGTTGTACAG
CAAACAAGATCTAGAGAAACATAAGCAATACATTAGCCTGGAACCTATTA
CAGTTAAAGAATTGGTGAAGCGGCTAAGAGAACAACTTAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001847XLOC_001847Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003337-proteinTCONS_00003337-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003337-exon-sc0000026-1575043694:361390..361980TCONS_00003337-exon-sc0000026-1575043694:361390..361980Clytia hemisphaericaexon
TCONS_00003337-exon-sc0000026-1575043694:358985..361085TCONS_00003337-exon-sc0000026-1575043694:358985..361085Clytia hemisphaericaexon
TCONS_00003337-exon-sc0000026-1510915933:361390..361980TCONS_00003337-exon-sc0000026-1510915933:361390..361980Clytia hemisphaericaexon
TCONS_00003337-exon-sc0000026-1510915933:358985..361085TCONS_00003337-exon-sc0000026-1510915933:358985..361085Clytia hemisphaericaexon
TCONS_00003337-exon-sc0000026-1491911889:361390..361980TCONS_00003337-exon-sc0000026-1491911889:361390..361980Clytia hemisphaericaexon
TCONS_00003337-exon-sc0000026-1491911889:358985..361085TCONS_00003337-exon-sc0000026-1491911889:358985..361085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:358985..361980 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75746	1.881	2.29726	1.94679	3.44906	2.63414	8.48685	10.4561	6.17675	7.21839	5.37057	6.70871	6.37629	6.19749	3.81327	3.90067	18.8673	22.0429	4.00983	3.67149	18.2907	20.6193	6.79879	8.80247	17.1355	17.3467	11.285	6.54456	2.17266	2.37518
Blast
[Close]
BLAST of TCONS_00003337 vs. Swiss-Prot (Human)
Match: RECK (Reversion-inducing cysteine-rich protein with Kazal motifs OS=Homo sapiens GN=RECK PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.958e-21
Identity = 49/149 (32.89%), Postives = 86/149 (57.72%), Query Frame = 1 
Query:  376 SSKERCRNVQCEPIIGDNCDLFTPPGSCCPKCGSMLRLLYSKQDLEKHKQYISLEPITVKELVKRLREQLKVAECQVHGHLTVENDLLVMLLVDSQKPTRDQITACRTEAQRFHKYINNSSPITQTNYYLSLLKASDLQTVEFHSPSSA 822
            SS   C +V+C  ++   C    PPG+CCP C  MLR+L+ K+ L+   +  + +PITV E+++++R  + V +C V G+ ++E++++++++     P   QI AC  EA++    IN+ SP   ++  LS L  S +Q V    PS+ 
Sbjct:  797 SSVAECASVKCPSLLAAGCKPIIPPGACCPLCAGMLRVLFDKEKLDTIAKVTNKKPITVLEILQKIRMHVSVPQCDVFGYFSIESEIVILIIPVDHYPKALQIEACNKEAEKIESLINSDSPTLASHVPLSALIISQVQ-VSSSVPSAG 944
The following BLAST results are available for this feature:
BLAST of TCONS_00003337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RECK2.958e-2132.89Reversion-inducing cysteine-rich protein with Kaza... [more]
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