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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003296 ID=TCONS_00003296|Name=TCONS_00003296|organism=Clytia hemisphaerica|type=transcript|length=2092bpRun BLAST on NCBI protein sequence of TCONS_00003296-protein >TCONS_00003296-protein ID=TCONS_00003296-protein|Name=TCONS_00003296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp MALSKPSFTKLSSCLQQLRSSRRFLILLPKENSYTVQKIELCRKSNTITARun BLAST on NCBI transcript from alignment at sc0000026:943116..966080+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003296 ID=TCONS_00003296|Name=TCONS_00003296|organism=Clytia hemisphaerica|type=transcript|length=22965bp|location=Sequence derived from alignment at sc0000026:943116..966080+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:943116..966080+ >TCONS_00003296 ID=TCONS_00003296|Name=TCONS_00003296|organism=Clytia hemisphaerica|type=CDS|length=10422bp|location=Sequence derived from alignment at sc0000026:943116..966080+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003296 vs. Swiss-Prot (Human)
Match: TTC19 (Tetratricopeptide repeat protein 19, mitochondrial OS=Homo sapiens GN=TTC19 PE=1 SV=4) HSP 1 Score: 99.7525 bits (247), Expect = 2.386e-22 Identity = 70/232 (30.17%), Postives = 117/232 (50.43%), Query Frame = 2
Query: 620 VKMSSQTVQNKVVLNIVDQLGHLAYELGNWAEAEILLNQTLHIMKQCGTTEEEDVYIEIVLRLAKIDTVYERKDDAIEKFEFCIANLESKIS-----VVDIYS-EECSERITLYGLVLTEYGTYTREIGLLDESEKAFSKALNICRNVLGPTHEQTSVLANDLATVYDEKGRYNKAIRLAEKAIRIASETSPENLATYKYNLGHILLHKGDLKRARKALREALQIAEENDDQ 1297
++++ QT K + D + +LA+ G AE L T+ + G +E++ IEI L+LA I R++ A+ +EFCI+ LE KI DI S EE + L G+ L Y ++++ + KAL I + G H QT VL +DLAT D +GR+++A ++A +A + + L NL +L+H+ +A++ +EAL+ A+ D+
Sbjct: 123 LRLAYQTDNKKAITYTYDLMANLAFIRGQLENAEQLFKATMSYLLGGGMKQEDNAIIEISLKLASIYAAQNRQEFAVAGYEFCISTLEEKIEREKELAEDIMSVEEKANTHLLLGMCLDACARYLLFSKQPSQAQRMYEKALQISEEIQGERHPQTIVLMSDLATTLDAQGRFDEAYIYMQRASDLARQINHPELHMVLSNLAAVLMHRERYTQAKEIYQEALKQAKLKKDE 354 The following BLAST results are available for this feature:
BLAST of TCONS_00003296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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