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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003288 ID=TCONS_00003288|Name=TCONS_00003288|organism=Clytia hemisphaerica|type=transcript|length=532bp
ATACTGCATGGTGGTATCAacgttttatatttcaaatacTCATAAAATTT
AATATGAATTACACGAAATGGCTTCAGCAAAGAGAAACCTTCAAATGGCT
GGCTTATCTAATGATATTCCTATATGGGCTAGAAAACCAAACAACCAAAT
ATTTTCTActctattatttcaaagatCGATTCCATATCCAAACAGCCCAA
GCAGTGATTTATTACAGTGTAACTGAGGCTATATATTCGGTGGCACAAAT
TATTGGTGGCGCCGTTATTGGGCGTTACACGGACCGCACGAGAAATTTGA
GGCGTGTGGTGGTGGGCGTAATGTTGTTGTCTTTTGGCGGGAATTTTCTT
TATGTTTTACACGGGCAGCTATGGTTGGTAATTCTCGGACGGTTTTTGAT
GGGATTCCCCGAATCATTGCAAACTGCAGTCATCGAAGTTCGTCGATCAT
ACCAAAACGAACAAGAAAAGCTGAAGAGAGTAATCAGTTGGTTTGAAGTG
TTTAACCAACTGGGAATTAACATCGGTGCTGG Run BLAST on NCBI protein sequence of TCONS_00003288-protein >TCONS_00003288-protein ID=TCONS_00003288-protein|Name=TCONS_00003288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
TAWWYQRFIFQILIKFNMNYTKWLQQRETFKWLAYLMIFLYGLENQTTKY
FLLYYFKDRFHIQTAQAVIYYSVTEAIYSVAQIIGGAVIGRYTDRTRNLR
RVVVGVMLLSFGGNFLYVLHGQLWLVILGRFLMGFPESLQTAVIEVRRSY
QNEQEKLKRVISWFEVFNQLGINIGA Run BLAST on NCBI transcript from alignment at sc0000026:606482..607673+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003288 ID=TCONS_00003288|Name=TCONS_00003288|organism=Clytia hemisphaerica|type=transcript|length=1192bp|location=Sequence derived from alignment at sc0000026:606482..607673+ (Clytia hemisphaerica)
ATACTGCATGGTGGTATCAacgttttatatttcaaatacTCATAAAATTT
AATATGAATTACACGAAATGGCTTCAGCAAAGAGAAACCTTCAAATGGCT
GGCTTATCTAATGATATTCCTATATGGGCTAGAAAACCAAACAACCAAAT
ATTTTCTActctattatttcaaagatCGATTCCATATCCAAACAGCCCAA
GCAGTGATTTATTACAGTGTAACTGAGGCTATATATTCGGTGGCACAAAT
TATTGGTGGCGCCGTTATTGGGCGTTACACGGACCGCACGAGAAATTTGA
GGCGTGTGGTGGTGGGCGTAATGTTGTTGTCTTTTGGCGGGAATTTTCTT
TATGTTTTACACGGGCAGCTATGGTTGGTAATTCTCGGACGGTTTTTGAT
GGGATTCCCCGAATCATTGCAAACTGCAGTCATCGGTAAGACTTTACATT
TTCAGTTGTAACTTACAATACTTAACTTAGAAAAAAGCCTATATAGTAGT
ACAGTAgactctctcttattcgatcttcaagggactaaagattttcttcg
aattagagaaagattcgaatagcaGAGAGTAATTCaaaccactttccagc
tgaggaGACTAatactttagttcgaattacagaaacattcgatttataga
agttcgaattagagagagttgactatAGTTTCTTTACCTGGAACCTCTAT
AGTTTGATTACCTCCTTATCTCGAACAAGTtctctcgtcccttcagttaa
caatgctttTCAAACAAGTacccataactcgaacaagtttgtgttcctcg
tgcgtgttcgagttatggagactcgacTGTACTAAGTTTTCGGCGCTAAA
AATTATTTGGTTCTTTGAAATACAGAGGAAACGAAACATAAATTATTCAA
TATACAGTGGTCAATACAAGGTTTTTTCGCTGAATTTTGCAGAATTGTGA
GACGAAAAAGTCTCGCAATATACTTCACTGAGATGGAAATCGATCTGAaa
cggaagaacttttaacactgtaTAAATctgttcggtttttttccgtACAC
CTAATTTTAGTCCTAAATCAATCTCAAATCATTATTTCACAGGAGAAGTT
CGTCGATCATACCAAAACGAACAAGAAAAGCTGAAGAGAGTAATCAGTTG
GTTTGAAGTGTTTAACCAACTGGGAATTAACATCGGTGCTGG Coding sequence (CDS) from alignment at sc0000026:606482..607673+ >TCONS_00003288 ID=TCONS_00003288|Name=TCONS_00003288|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at sc0000026:606482..607673+ (Clytia hemisphaerica)
ACTGCATGGTGGTATCAacgttttatatttcaaatacTCATAAAATTTAA
TATGAATTACACGAAATGGCTTCAGCAAAGAGAAACCTTCAAATGGCTGG
CTTATCTAATGATATTCCTATATGGGCTAGAAAACCAAACAACCAAATAT
TTTCTActctattatttcaaagatCGATTCCATATCCAAACAGCCCAAGC
AGTGATTTATTACAGTGTAACTGAGGCTATATATTCGGTGGCACAAATTA
TTGGTGGCGCCGTTATTGGGCGTTACACGGACCGCACGAGAAATTTGAGG
CGTGTGGTGGTGGGCGTAATGTTGTTGTCTTTTGGCGGGAATTTTCTTTA
TGTTTTACACGGGCAGCTATGGTTGGTAATTCTCGGACGGTTTTTGATGG
GATTCCCCGAATCATTGCAAACTGCAGTCATCGAAGTTCGTCGATCATAC
CAAAACGAACAAGAAAAGCTGAAGAGAGTAATCAGTTGGTTTGAAGTGTT
TAACCAACTGGGAATTAACATCGGTGCTACTGCATGGTGGTATCAacgtt
ttatatttcaaatacTCATAAAATTTAATATGAATTACACGAAATGGCTT
CAGCAAAGAGAAACCTTCAAATGGCTGGCTTATCTAATGATATTCCTATA
TGGGCTAGAAAACCAAACAACCAAATATTTTCTActctattatttcaaag
atCGATTCCATATCCAAACAGCCCAAGCAGTGATTTATTACAGTGTAACT
GAGGCTATATATTCGGTGGCACAAATTATTGGTGGCGCCGTTATTGGGCG
TTACACGGACCGCACGAGAAATTTGAGGCGTGTGGTGGTGGGCGTAATGT
TGTTGTCTTTTGGCGGGAATTTTCTTTATGTTTTACACGGGCAGCTATGG
TTGGTAATTCTCGGACGGTTTTTGATGGGATTCCCCGAATCATTGCAAAC
TGCAGTCATCGAAGTTCGTCGATCATACCAAAACGAACAAGAAAAGCTGA
AGAGAGTAATCAGTTGGTTTGAAGTGTTTAACCAACTGGGAATTAACATC
GGTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003288-exon-sc0000026-1491911889:606482..606916 | TCONS_00003288-exon-sc0000026-1491911889:606482..606916 | Clytia hemisphaerica | exon |
| TCONS_00003288-exon-sc0000026-1510915933:606482..606916 | TCONS_00003288-exon-sc0000026-1510915933:606482..606916 | Clytia hemisphaerica | exon |
| TCONS_00003288-exon-sc0000026-1575043694:606482..606916 | TCONS_00003288-exon-sc0000026-1575043694:606482..606916 | Clytia hemisphaerica | exon |
| TCONS_00003288-exon-sc0000026-1491911889:607577..607673 | TCONS_00003288-exon-sc0000026-1491911889:607577..607673 | Clytia hemisphaerica | exon |
| TCONS_00003288-exon-sc0000026-1510915933:607577..607673 | TCONS_00003288-exon-sc0000026-1510915933:607577..607673 | Clytia hemisphaerica | exon |
| TCONS_00003288-exon-sc0000026-1575043694:607577..607673 | TCONS_00003288-exon-sc0000026-1575043694:607577..607673 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:606482..607673 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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