TCONS_00003283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003283
Unique NameTCONS_00003283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003283 ID=TCONS_00003283|Name=TCONS_00003283|organism=Clytia hemisphaerica|type=transcript|length=1251bp
AGAATTGCCATCATGTTGTATTACTTAGACATGGTACCTGTCCCTGCTAA
CATTCAAGCATACATTCAGACTGGAAACTCGCCAAATCTGTCTTACTCTG
CTAGCCATGATTCTAGTCACAAAGGAGCTCCTAAAGAGCGATGCTCCTCA
GCTACTTTCACGCGAGAACACAAATATCAAACGAGATCGCCCGACCATAA
AGACAAATACAATACTCCGAACACTGAAGTGAAAAGTAGGCGAAGCAAAA
CTATAAGTCATTTAAagactaaaattccaaaaatcctgaaatcaaaacat
aaaagtGAAAGTTGGGAGCATGACGGGAATAATAACAACAATTTTGAGAG
TTACTATGACGATTTTGGAGCACGTGACTGCAAAACGTTTCAAAACAACC
ATTCTCGCTATTCATCGCTCGACTCTGAAACGTCTTCAAATTTTTCCGAA
CTTTCATTCGACTATTCGTCTTCTCTGAACTCATCAATGAACTCGAGTCA
CTATCTCTCACCAAGAAGCGATACCAACAATCACACTACCAGCACCGCAA
AACAAGAAAGGCGTTGTCGTTCCGCCATTTCGTTCACAAGCCGATTACAC
CCTGACACGCGCCCATCAGAAACTACCGAACGCCCTACGATACGTCGTGA
GAAGTCTGGTATACCAGTTGCTAACAAATATCGATCCAAATCTCTCGAAC
GTCGCCCTCACAAAATAGTAGAAAGGGAGCGTCCAAAATCGACGATAGAG
CACCAGCGCTCGCGGTCGCCTGGTATACCGATACGAACTAATGGTAACCG
GGGGAGACGCCCTCGTAACCATAGTGACTTGAACGATGACGTATTTGTGT
CATCGTCTTGTCCGAAAACGAGTTATGGTCGCATGTCACGTTTGCACGAT
TCTAACACGTTTCGTGTCACAAACTCGAATGAGTGTTTTGAAAGGACTAC
TTCTTCTTCATCACCTTCTACGAGAAACTGTTACAGTGCTAATGGCTATA
CTTCAAAACGACCTCATTCGTCATGCTCGGGTTCTTCGGGTGGATTTAAT
AGGTCGTTTGAAAAAGAAACTCACACACAGGACTTTCACGAGATTTTACA
CATGCTGCAACAAGACGCTTCAAACACCAAACGAGACGGGCTCACCTCGT
TTCAAGGCCTCTTACAATCAAGCATGAGGTACCTTAACACCGAAGAAGCT
GTTCGCGTCAAAGAAACATTCAACAGATATTTTGCTGAACCAAACTCCAA
A
Run BLAST on NCBI

transcript from alignment at sc0000026:481453..483038+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003283 ID=TCONS_00003283|Name=TCONS_00003283|organism=Clytia hemisphaerica|type=transcript|length=1586bp|location=Sequence derived from alignment at sc0000026:481453..483038+ (Clytia hemisphaerica)
AGAATTGCCATCATGTTGTATTACTTAGACATGGTACCTGTCCCTGCTAA
CATTCAAGCATACATTCAGACTGGAAACTCGCCAAATCTGTCTTACTCTG
CTAGCCATGATTCTAGTCACAAAGGAGCTCCTAAAGAGCGATGCTCCTCA
GCTACTTTCACGCGAGAACACAAATATCAAACGAGATCGCCCGACCATAA
AGACAAATACAATACTCCGAACACTGAAGTGAAAAGTAGGCGAAGCAAAA
CTATAAGTCATTTAAagactaaaattccaaaaatcctgaaatcaaaacat
aaaagtGAAAGTTGGGAGCATGACGGGAATAATAACAACAATTTTGAGAG
TTACTATGACGATTTTGGAGCACGTGACTGCAAAACGTTTCAAAACAACC
ATTCTCGCTATTCATCGCTCGACTCTGAAACGTCTTCAAATTTTTCCGAA
CTTTCATTCGACTATTCGTCTTCTCTGAACTCATCAATGAACTCGAGTCA
CTATCTCTCACCAAGAAGCGATACCAACAATCACACTACCAGCACCGCAA
AACAAGAAAGGCGTTGTCGTTCCGCCATTTCGTTCACAAGCCGATTACAC
CCTGACACGCGCCCATCAGAAACTACCGAACGCCCTACGATACGTCGTGA
GAAGTCTGGTATACCAGTTGCTAACAAATATCGATCCAAATCTCTCGAAC
GTCGCCCTCACAAAATAGTAGAAAGGGAGCGTCCAAAATCGACGATAGAG
CACCAGCGCTCGCGGTCGCCTGGTATACCGATACGAACTAATGGTAACCG
GGGGAGACGCCCTCGTAACCATAGTGACTTGAACGATGACGTATTTGTGT
CATCGTCTTGTCCGAAAACGAGTTATGGTCGCATGTCACGTTTGCACGAT
TCTAACACGTTTCGTGTCACAAACTCGAATGAGTGTTTTGAAAGGACTAC
TTCTTCTTCATCACCTTCTACGAGAAACTGTTACAGTGCTAATGGCTATA
CTTCAAAACGACCTCATTCGTCATGCTCGGGTTCTTCGGGTGGATTTAAT
AGGTCGTTTGAAAAAGAAACTCACACACAGGTAGAGAGGATGTTTTGGTC
GAAAGTTTATACAATTTTCTTGGTTTCTTCTTGTTTTCTAacctttttta
tgaaattgagaACACATTACTCTGCCTACCCTAACGCCACAAGGGCGTAT
GGCTCGAGTTTAGCGTCGAGTGAAGTTAAATGTCTTCATATTAAACTGTC
TTAGACATTCTAACCCAGTGACTAGAAATTGACCATGTGAAAGTCAAACC
TGATCCTTATTCACGCAATTCATTAGGGTCAAAGGTAAATGCCTTCTCAA
CTgttcttttaagaaaaatgaaacaaaaactcaATTTTCACATTCCCTTT
TTCTTCATTAAACAGGACTTTCACGAGATTTTACACATGCTGCAACAAGA
CGCTTCAAACACCAAACGAGACGGGCTCACCTCGTTTCAAGGCCTCTTAC
AATCAAGCATGAGGTACCTTAACACCGAAGAAGCTGTTCGCGTCAAAGAA
ACATTCAACAGATATTTTGCTGAACCAAACTCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001823XLOC_001823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003283-exon-sc0000026-1491911889:481453..482532TCONS_00003283-exon-sc0000026-1491911889:481453..482532Clytia hemisphaericaexon
TCONS_00003283-exon-sc0000026-1510915933:481453..482532TCONS_00003283-exon-sc0000026-1510915933:481453..482532Clytia hemisphaericaexon
TCONS_00003283-exon-sc0000026-1575043694:481453..482532TCONS_00003283-exon-sc0000026-1575043694:481453..482532Clytia hemisphaericaexon
TCONS_00003283-exon-sc0000026-1491911889:482868..483038TCONS_00003283-exon-sc0000026-1491911889:482868..483038Clytia hemisphaericaexon
TCONS_00003283-exon-sc0000026-1510915933:482868..483038TCONS_00003283-exon-sc0000026-1510915933:482868..483038Clytia hemisphaericaexon
TCONS_00003283-exon-sc0000026-1575043694:482868..483038TCONS_00003283-exon-sc0000026-1575043694:482868..483038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:481453..483038 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.143226	0.141928	0.645931	0.77784	89.592	59.9594	24.8454	25.3094	13.1111	16.6568	9.73709	11.9733	1.66384	1.48873	0.426473	0.333679	2.62346	2.95976	3.6328	3.83536	3.95021	4.1979	0.961	1.55606	3.29132	2.78865	0.693159	0.881987	0.241273	0.206036
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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