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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003270 ID=TCONS_00003270|Name=TCONS_00003270|organism=Clytia hemisphaerica|type=transcript|length=1672bp
ATGAGGTATgacttatataaaaaaagagatAAATTTAAAGTAATAGACCT
ATTTGCACTGTGTGTAAGGTATTAAGATTTATATTGTTGGATAACAGACA
ACGTTCTTGGAAACTTGTAATATAAAAATCAGTAGCTGGAGACTCGGGca
cattttcattcaaaatattttgattggattCTTCAAAAGGATTGGGAACG
AAACTTACGTTGTGATTGTttataaaagatatttttcagGAAGGTTTGTT
CCATACCCTCAACACAATCTccaaaatgttttcgaatgagGCCGATGATG
AATTCTTATATTGGTTCAGTCGGATTGTTTACCCGTTTTTCTCGATCGGG
ATAATCGGAAATCTCTTGATCATCATTTATCACATGCATCAGAATTGGGG
AGATTTACGGAAAATGAGCTCGTATAATTTCTTTATCATGCAGCTAGCGT
TCGCCGATCTCGTTGTTTGTGTAACCACCCCAGCTATGAGGTATGAAGAG
CAAAAGCCTGTTTTCCAGGCTGGTCATTTTACGTGTAAATACATCAGACC
GAGTACCCTGCTTGTGGCCCCAATGGCGTCGTGTTGGATTTTGGTCGGCC
TGTCTTATTTCCGATATTTGGTCCTGCGTCATAATTTTAATGGAAAGATC
TCGAAAATTCACATTATGATTGTTTGTTTTGCGTTTTGGTTCTTATCAGC
TGTTTATTATTACATGGCTTTCGACTCGAATGGTATAAATGAAAATGACC
AGTGTGATTAtggtaaaatttacaaaaacatgGATGCCATGCTGGTATTC
GTGTTTGTCTTCGAGAGATTCTTGGATTGTTTCTTACCGACCATACTAAT
GACCATCTGTTTCCGCTCGATTCGTAATCATATAATGGAACATGCCGCTG
TGGCGATTATCCCCGTCCAAATGAGAATGCGACGTTTACGGGCCGTGCAG
ACCTTAAAATGGTTGATTATTTGTTACGTGTTTTTTGTGTTCCCTGGCCG
TACGCTTGTCACGATTTTCCGATTGATGAATCATTTCAAAGTGGGTTTCC
ATGGTGAAAAAGATGAGTTGATTTTGGATGTTGTTTATCACTGTATGTTA
TTTTGCATCAATCTCAACAACATGGTCAATGTGTTCATCTTTCTCCGAAT
GGATAACCAGTTCCGTCAATTCTTATCAACGCCTTTTGTTCGGTTTGGTC
TCTTCCTCCGCTGCAACGTCGCCGTGCCGGTTGGTAACGCTTTCAATTGT
TGTGTTGGTGGCGCACAACCTGAAGAACCGGAAGCTCCATTGGATGTCAT
TGTCAATCAGAATCATGAGTAAAAAACTCGAACTCGTGCTTAAGTATTTA
AAAAAGATGGAAAGATATTCCAACTCTTAttttaaaacttgaattttgat
TCGGTGAAGGGATATTTAACCGAGATTCATAGACTGGAGTCGCGGTTTGA
ATTATGTGTTTTATGATAATGCAATGACTGTTATGTCGTAAATGTAGGCT
GCTTAAACTACCTAAGGTTTTGCAAAGGTCTGTGATTAATGTTAGTTTCA
ATAGCGGCCTTACTATACCCTACTTTTTCTTAAATTAAGATGCTAGATTC
GAATATTGGATTCTTTTCTAGGTAAAATATTgctatgttgaaaaatttat
aaTAAACAGAAAAAGAACTGCA Run BLAST on NCBI protein sequence of TCONS_00003270-protein >TCONS_00003270-protein ID=TCONS_00003270-protein|Name=TCONS_00003270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MFSNEADDEFLYWFSRIVYPFFSIGIIGNLLIIIYHMHQNWGDLRKMSSY
NFFIMQLAFADLVVCVTTPAMRYEEQKPVFQAGHFTCKYIRPSTLLVAPM
ASCWILVGLSYFRYLVLRHNFNGKISKIHIMIVCFAFWFLSAVYYYMAFD
SNGINENDQCDYGKIYKNMDAMLVFVFVFERFLDCFLPTILMTICFRSIR
NHIMEHAAVAIIPVQMRMRRLRAVQTLKWLIICYVFFVFPGRTLVTIFRL
MNHFKVGFHGEKDELILDVVYHCMLFCINLNNMVNVFIFLRMDNQFRQFL
STPFVRFGLFLRCNVAVPVGNAFNCCVGGAQPEEPEAPLDVIVNQNHE Run BLAST on NCBI transcript from alignment at sc0000026:340753..343853+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003270 ID=TCONS_00003270|Name=TCONS_00003270|organism=Clytia hemisphaerica|type=transcript|length=3101bp|location=Sequence derived from alignment at sc0000026:340753..343853+ (Clytia hemisphaerica)
ATGAGGTATgacttatataaaaaaagagatAAATTTAAAGTAATAGACCT
ATTTGCACTGTGTGTAAGGTATTAAGATTTATATTGTTGGATAACAGACA
ACGTTCTTGGAAACTTGTAATATAAAAATCAGTAGCTGGAGACTCGGGca
cattttcattcaaaatattttgattggattCTTCAAAAGGATTGGGAACG
AAACTTACGTTGTGATTGTttataaaagatatttttcaggttagtacacg
ttttttttataagaacgtccaaaaattttgaagtcttaggatgttcttaa
ctttttgaattttaagcctaaaaattttctcaacatgttcttttttttac
cattttaccattttgtgagcatttctGTCCATTATTTTCTGTAACCTAAG
ATAGGGCCTtatgaatgttttctgcacaccacgctgaagctctaaaggga
tgtgtgaaaacataacaatctgacgaatatgctttctttgaaattttgcc
attccaaaagtaaatttaaagaaaaacaacaatgtttttaaaattgagca
aaagcttttgctcaattttaaaaacattgttgtttttctttaaattgacg
aatatgcaatcttgaaatcgtaaggaccacgtttgtctaaaaggactagg
aacaacaacaaagttgcgtgattgtgttttttatgaatagggcgccgtat
cagtttttgaccttccggcgcacaacaagattcttctTGTAGatttttcc
gcgggaggactattttcctcgggaggtttaccgtgcgcgtaagaaaatta
tgaacagctgttatcaggttaattTACTAAAGATATTGGTGATTGCCAAA
gtttgcaaagccttaaaatgtttttaactttgttcttaacatgtttgcCA
TCGTAATTTCGAAATGTTTATGTCATGTTTCTTAGCATTACATTATAGAC
TTTATAAAAGCACTTGTTTCAAAATAACTGAATTGTTTCTCTTGCTTGTA
AAAGCACCAATAGTACAAATGCAccgaatctaaaaatagtaaCAAATCTG
CAGAAATTTATTCGTTTGTATGACTCGCGATCCCAACGTGTGAGATGCGG
AGCACTATTGTATCAAAAGACAGAAAATACAAAGAAGAATCATACTTGAA
GAACGAAATCAAGAAATGCCAAATCTGCCGTAGGGTTGAGCAATTTGCCG
AAGGCTACGGCAAATTGAACGGTGTTAATGATCATTTTTGAGTAATTCAT
TTTTTGCTTGTACTGTACTTTGTGACTTCTCacttcttgaaaaattttaa
tctaACATGGGATTGATTGTACAGGGTGATATATATGGTGGCCGAGGAAG
GCAGTAacgaatttctttttttcagtttactaatttcttttttcgtttca
ttttatttttatttttgtttttattttttttatataatattttttttatt
ttcaatcttttttttttattgttagacttttatttttctcataatgATTG
ATATTTTCGCTGACATTTCGAAAAATGTGTTACTGCCTTCCTCGGCCACC
ATAGATATATGGGTATTTCCACTGTATTTTGCCTATCGAAAATACAAgaa
tattcgagttatagaggtttgtGTTTTGCACTATACAAATATTTAGACCA
TTTCTTTCATGTTTCCAGGAAGGTTTGTTCCATACCCTCAACACAATCTc
caaaatgttttcgaatgagGCCGATGATGAATTCTTATATTGGTTCAGTC
GGATTGTTTACCCGTTTTTCTCGATCGGGATAATCGGAAATCTCTTGATC
ATCATTTATCACATGCATCAGAATTGGGGAGATTTACGGAAAATGAGCTC
GTATAATTTCTTTATCATGCAGCTAGCGTTCGCCGATCTCGTTGTTTGTG
TAACCACCCCAGCTATGAGGTATGAAGAGCAAAAGCCTGTTTTCCAGGCT
GGTCATTTTACGTGTAAATACATCAGACCGAGTACCCTGCTTGTGGCCCC
AATGGCGTCGTGTTGGATTTTGGTCGGCCTGTCTTATTTCCGATATTTGG
TCCTGCGTCATAATTTTAATGGAAAGATCTCGAAAATTCACATTATGATT
GTTTGTTTTGCGTTTTGGTTCTTATCAGCTGTTTATTATTACATGGCTTT
CGACTCGAATGGTATAAATGAAAATGACCAGTGTGATTAtggtaaaattt
acaaaaacatgGATGCCATGCTGGTATTCGTGTTTGTCTTCGAGAGATTC
TTGGATTGTTTCTTACCGACCATACTAATGACCATCTGTTTCCGCTCGAT
TCGTAATCATATAATGGAACATGCCGCTGTGGCGATTATCCCCGTCCAAA
TGAGAATGCGACGTTTACGGGCCGTGCAGACCTTAAAATGGTTGATTATT
TGTTACGTGTTTTTTGTGTTCCCTGGCCGTACGCTTGTCACGATTTTCCG
ATTGATGAATCATTTCAAAGTGGGTTTCCATGGTGAAAAAGATGAGTTGA
TTTTGGATGTTGTTTATCACTGTATGTTATTTTGCATCAATCTCAACAAC
ATGGTCAATGTGTTCATCTTTCTCCGAATGGATAACCAGTTCCGTCAATT
CTTATCAACGCCTTTTGTTCGGTTTGGTCTCTTCCTCCGCTGCAACGTCG
CCGTGCCGGTTGGTAACGCTTTCAATTGTTGTGTTGGTGGCGCACAACCT
GAAGAACCGGAAGCTCCATTGGATGTCATTGTCAATCAGAATCATGAGTA
AAAAACTCGAACTCGTGCTTAAGTATTTAAAAAAGATGGAAAGATATTCC
AACTCTTAttttaaaacttgaattttgatTCGGTGAAGGGATATTTAACC
GAGATTCATAGACTGGAGTCGCGGTTTGAATTATGTGTTTTATGATAATG
CAATGACTGTTATGTCGTAAATGTAGGCTGCTTAAACTACCTAAGGTTTT
GCAAAGGTCTGTGATTAATGTTAGTTTCAATAGCGGCCTTACTATACCCT
ACTTTTTCTTAAATTAAGATGCTAGATTCGAATATTGGATTCTTTTCTAG
GTAAAATATTgctatgttgaaaaatttataaTAAACAGAAAAAGAACTGC
A Coding sequence (CDS) from alignment at sc0000026:340753..343853+ >TCONS_00003270 ID=TCONS_00003270|Name=TCONS_00003270|organism=Clytia hemisphaerica|type=CDS|length=1047bp|location=Sequence derived from alignment at sc0000026:340753..343853+ (Clytia hemisphaerica)
atgttttcgaatgagGCCGATGATGAATTCTTATATTGGTTCAGTCGGAT
TGTTTACCCGTTTTTCTCGATCGGGATAATCGGAAATCTCTTGATCATCA
TTTATCACATGCATCAGAATTGGGGAGATTTACGGAAAATGAGCTCGTAT
AATTTCTTTATCATGCAGCTAGCGTTCGCCGATCTCGTTGTTTGTGTAAC
CACCCCAGCTATGAGGTATGAAGAGCAAAAGCCTGTTTTCCAGGCTGGTC
ATTTTACGTGTAAATACATCAGACCGAGTACCCTGCTTGTGGCCCCAATG
GCGTCGTGTTGGATTTTGGTCGGCCTGTCTTATTTCCGATATTTGGTCCT
GCGTCATAATTTTAATGGAAAGATCTCGAAAATTCACATTATGATTGTTT
GTTTTGCGTTTTGGTTCTTATCAGCTGTTTATTATTACATGGCTTTCGAC
TCGAATGGTATAAATGAAAATGACCAGTGTGATTAtggtaaaatttacaa
aaacatgGATGCCATGCTGGTATTCGTGTTTGTCTTCGAGAGATTCTTGG
ATTGTTTCTTACCGACCATACTAATGACCATCTGTTTCCGCTCGATTCGT
AATCATATAATGGAACATGCCGCTGTGGCGATTATCCCCGTCCAAATGAG
AATGCGACGTTTACGGGCCGTGCAGACCTTAAAATGGTTGATTATTTGTT
ACGTGTTTTTTGTGTTCCCTGGCCGTACGCTTGTCACGATTTTCCGATTG
ATGAATCATTTCAAAGTGGGTTTCCATGGTGAAAAAGATGAGTTGATTTT
GGATGTTGTTTATCACTGTATGTTATTTTGCATCAATCTCAACAACATGG
TCAATGTGTTCATCTTTCTCCGAATGGATAACCAGTTCCGTCAATTCTTA
TCAACGCCTTTTGTTCGGTTTGGTCTCTTCCTCCGCTGCAACGTCGCCGT
GCCGGTTGGTAACGCTTTCAATTGTTGTGTTGGTGGCGCACAACCTGAAG
AACCGGAAGCTCCATTGGATGTCATTGTCAATCAGAATCATGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003270-exon-sc0000026-1491911889:340753..340991 | TCONS_00003270-exon-sc0000026-1491911889:340753..340991 | Clytia hemisphaerica | exon |
| TCONS_00003270-exon-sc0000026-1510915933:340753..340991 | TCONS_00003270-exon-sc0000026-1510915933:340753..340991 | Clytia hemisphaerica | exon |
| TCONS_00003270-exon-sc0000026-1575043694:340753..340991 | TCONS_00003270-exon-sc0000026-1575043694:340753..340991 | Clytia hemisphaerica | exon |
| TCONS_00003270-exon-sc0000026-1491911889:342421..343853 | TCONS_00003270-exon-sc0000026-1491911889:342421..343853 | Clytia hemisphaerica | exon |
| TCONS_00003270-exon-sc0000026-1510915933:342421..343853 | TCONS_00003270-exon-sc0000026-1510915933:342421..343853 | Clytia hemisphaerica | exon |
| TCONS_00003270-exon-sc0000026-1575043694:342421..343853 | TCONS_00003270-exon-sc0000026-1575043694:342421..343853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:340753..343853 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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