TCONS_00003236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003236
Unique NameTCONS_00003236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003236 ID=TCONS_00003236|Name=TCONS_00003236|organism=Clytia hemisphaerica|type=transcript|length=1188bp
CAACAATACAAGTAGAATAACAATAGAACGTAAAATACTCAGCTAAATAT
GTCATATAAGCAATAAtttcgttaaaaaaattcaaaccagTCTCCGAACA
GCCATAGAAACGCTCTTCAATGATTTTTCCCATTCTATCCATGACTTCCA
GACGATTCCCTGGGCAAATGAAGGAGTTACCTCAGTCTGCCGGTAAACGC
CATTGAAATTCATGAGAAAGCAACTCTTGTGCCACCACCCAGATGGAAAG
TTTGCAGCACAATGACTTTGATAAATATCCCTATCTTTATCAACCGTAGA
AAACTCCATGTTATCACCAATCAGCCAATTATCCGGGTCTGATACAAACC
CACGATCAAATACACCAGCATGCAACCGATAAAAATTTGCTTCGTTTTCA
ATCGAAAAGTTTTTGTAAACGGCAAACTGGCTTTGGCCTTGAAATGAATG
AGCTTCAAGTTTAATATTCATGTGTCGTCCGTCAGTTAATTTGTGTATGT
TTTCAAGACCTAACCAATATTCACCTTCGACATTACCAAAACCATTTTTG
TAATCAGTCCACAAGCGATCGAAATCGACAGAACCGTCGAATCTCTTTTG
AATGANCAATATTCACCTTCGACATTACCAAAACCATTTTTGTAATCAGT
CCACAAGCGATCGAAATCGACAGAACCGTCGAATCTCTTTTGAATGATAA
TCCAACCTTTGTTCTTTGTGACATCCATTTCACAATAAACATCTTGTAGC
CTTTCATCAAATGTTATCTCATAAACACCACTTGTCTTATAACCACTTTG
AAGCCAAGAATCACAATCTTTATATTGGTTTACGGCCTTGTATAATTTGC
TTCCAATTTTTGATACCAAATAGTCCGTTACTTTTTTGACGATTCCATAA
AGCTTACAACTCCATATATCTCCTGATGCCGATAAATTGAGAAACTCAAC
GTAATGACATTTGATTACCAGACATTTTTTGAAACAGAAATCATAATGCA
CTGCTTCCATTTCAAACCATGTTGGAGGACCAGAAATGGCAGCATTTCTT
CCAACAAACTCGAAAGGGACCCATTTTCCAGCTAACGTTCCCGGGGAACA
AAGGAAACAAACtgatacaaaatacaaaaagctTGAAAGCCATGATGTGG
TCATGTTGTCCCAAGAATTTGATTTAGATCAAacttat
Run BLAST on NCBI

protein sequence of TCONS_00003236-protein

>TCONS_00003236-protein ID=TCONS_00003236-protein|Name=TCONS_00003236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MTTSWLSSFLYFVSVCFLCSPGTLAGKWVPFEFVGRNAAISGPPTWFEME
AVHYDFCFKKCLVIKCHYVEFLNLSASGDIWSCKLYGIVKKVTDYLVSKI
GSKLYKAVNQYKDCDSWLQSGYKTSGVYEITFDERLQDVYCEMDVTKNKG
WIIIQKRFDGSVDFDRLWTDYKNGFGNVEGEYXSFKRDSTVLSISIACGL
ITKMVLVMSKVNIG
Run BLAST on NCBI

transcript from alignment at sc0000025:657036..658223

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003236 ID=TCONS_00003236|Name=TCONS_00003236|organism=Clytia hemisphaerica|type=transcript|length=1188bp|location=Sequence derived from alignment at sc0000025:657036..658223 (Clytia hemisphaerica)
ataagtTTGATCTAAATCAAATTCTTGGGACAACATGACCACATCATGGC
TTTCAagctttttgtattttgtatcaGTTTGTTTCCTTTGTTCCCCGGGA
ACGTTAGCTGGAAAATGGGTCCCTTTCGAGTTTGTTGGAAGAAATGCTGC
CATTTCTGGTCCTCCAACATGGTTTGAAATGGAAGCAGTGCATTATGATT
TCTGTTTCAAAAAATGTCTGGTAATCAAATGTCATTACGTTGAGTTTCTC
AATTTATCGGCATCAGGAGATATATGGAGTTGTAAGCTTTATGGAATCGT
CAAAAAAGTAACGGACTATTTGGTATCAAAAATTGGAAGCAAATTATACA
AGGCCGTAAACCAATATAAAGATTGTGATTCTTGGCTTCAAAGTGGTTAT
AAGACAAGTGGTGTTTATGAGATAACATTTGATGAAAGGCTACAAGATGT
TTATTGTGAAATGGATGTCACAAAGAACAAAGGTTGGATTATCATTCAAA
AGAGATTCGACGGTTCTGTCGATTTCGATCGCTTGTGGACTGATTACAAA
AATGGTTTTGGTAATGTCGAAGGTGAATATTGNTCATTCAAAAGAGATTC
GACGGTTCTGTCGATTTCGATCGCTTGTGGACTGATTACAAAAATGGTTT
TGGTAATGTCGAAGGTGAATATTGGTTAGGTCTTGAAAACATACACAAAT
TAACTGACGGACGACACATGAATATTAAACTTGAAGCTCATTCATTTCAA
GGCCAAAGCCAGTTTGCCGTTTACAAAAACTTTTCGATTGAAAACGAAGC
AAATTTTTATCGGTTGCATGCTGGTGTATTTGATCGTGGGTTTGTATCAG
ACCCGGATAATTGGCTGATTGGTGATAACATGGAGTTTTCTACGGTTGAT
AAAGATAGGGATATTTATCAAAGTCATTGTGCTGCAAACTTTCCATCTGG
GTGGTGGCACAAGAGTTGCTTTCTCATGAATTTCAATGGCGTTTACCGGC
AGACTGAGGTAACTCCTTCATTTGCCCAGGGAATCGTCTGGAAGTCATGG
ATAGAATGGGAAAAATCATTGAAGAGCGTTTCTATGGCTGTTCGGAGAct
ggtttgaatttttttaacgaaaTTATTGCTTATATGACATATTTAGCTGA
GTATTTTACGTTCTATTGTTATTCTACTTGTATTGTTG

Coding sequence (CDS) from alignment at sc0000025:657036..658223

>TCONS_00003236 ID=TCONS_00003236|Name=TCONS_00003236|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0000025:657036..658223 (Clytia hemisphaerica)
ATGACCACATCATGGCTTTCAagctttttgtattttgtatcaGTTTGTTT
CCTTTGTTCCCCGGGAACGTTAGCTGGAAAATGGGTCCCTTTCGAGTTTG
TTGGAAGAAATGCTGCCATTTCTGGTCCTCCAACATGGTTTGAAATGGAA
GCAGTGCATTATGATTTCTGTTTCAAAAAATGTCTGGTAATCAAATGTCA
TTACGTTGAGTTTCTCAATTTATCGGCATCAGGAGATATATGGAGTTGTA
AGCTTTATGGAATCGTCAAAAAAGTAACGGACTATTTGGTATCAAAAATT
GGAAGCAAATTATACAAGGCCGTAAACCAATATAAAGATTGTGATTCTTG
GCTTCAAAGTGGTTATAAGACAAGTGGTGTTTATGAGATAACATTTGATG
AAAGGCTACAAGATGTTTATTGTGAAATGGATGTCACAAAGAACAAAGGT
TGGATTATCATTCAAAAGAGATTCGACGGTTCTGTCGATTTCGATCGCTT
GTGGACTGATTACAAAAATGGTTTTGGTAATGTCGAAGGTGAATATTGNT
CATTCAAAAGAGATTCGACGGTTCTGTCGATTTCGATCGCTTGTGGACTG
ATTACAAAAATGGTTTTGGTAATGTCGAAGGTGAATATTGGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001796XLOC_001796Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003236-proteinTCONS_00003236-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003236-exon-sc0000025-1491911889:657036..658223TCONS_00003236-exon-sc0000025-1491911889:657036..658223Clytia hemisphaericaexon
TCONS_00003236-exon-sc0000025-1510915933:657036..658223TCONS_00003236-exon-sc0000025-1510915933:657036..658223Clytia hemisphaericaexon
TCONS_00003236-exon-sc0000025-1575043694:657036..658223TCONS_00003236-exon-sc0000025-1575043694:657036..658223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:657036..658223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.217433	0.106015	0.205157	0.160571	0.09774	0.154471	0.559088	0.348941	0.366452	0.151303	0.220288	0.193078	1.78349	2.02738	0.576172	0.794984	0.353656	0.306719	3.92931	5.8048	1.15624	0.922868	0.290855	0.33998	0.19454	0.381969	0.0993811	0.0530311	0.120667	0.12294
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00003236 vs. Swiss-Prot (Human)
Match: FGL1 (Fibrinogen-like protein 1 OS=Homo sapiens GN=FGL1 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.045e-35
Identity = 76/181 (41.99%), Postives = 99/181 (54.70%), Query Frame = -1 
Query:   94 IQKRFDGSVDFDRLWTDYKNGFGNV---EGEYWLGLENIHKLTDGRHMNIKLEAHSFQGQSQFAVYKNFSIENEANFYRLHAGVFDR--------GFVSDPDNWLIGDNMEFSTVDKDRDIYQSHCAANFPSGWWHKSCFLMNFNGVYRQTEVTPSFAQGIVWKSWIEWEKSLKSVSMAVR 603
            IQ+R DGS +F+R W DY+NGFGN     GEYWLG +N+H LT      +K++   F+  S++A YKNF + +E NFY L+ G +           F  +   W     M+FST D+D D Y+ +CA    SGWW   C   N NGVY     T     GIVW +W  W  SLKSV M +R
Sbjct:  123 IQRRSDGSENFNRGWKDYENGFGNFVQKHGEYWLGNKNLHFLTTQEDYTLKIDLADFEKNSRYAQYKNFKVGDEKNFYELNIGEYSGTAGDSLAGNFHPEVQWWASHQRMKFSTWDRDHDNYEGNCAEEDQSGWWFNRCHSANLNGVYYSGPYTAKTDNGIVWYTWHGWWYSLKSVVMKIR 303
The following BLAST results are available for this feature:
BLAST of TCONS_00003236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGL11.045e-3541.99Fibrinogen-like protein 1 OS=Homo sapiens GN=FGL1 ... [more]
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