TCONS_00003235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003235
Unique NameTCONS_00003235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003235 ID=TCONS_00003235|Name=TCONS_00003235|organism=Clytia hemisphaerica|type=transcript|length=1370bp
AACAAACACGTGTTATGAAAATCTTCGGTTCatatattttgttttaatat
tttgtttatttttatccaaataattttaatgattttgaaGAGCATGAGAA
ATTATGTATTGATAAAGAAATACTCTGTTTCTCATTAATGTAACACGCTC
TACCTAAAAAGTATTGAGCATTCTCAATTGTGCAGAGAATCACATGAGGA
TACAGTAACACAAATTAATGTAATTAATGAATAATATAAGTGGGTAATgt
tcaaataaataaatcaattaaaaatacaaataaCAGTTGTTTTTTCTAAA
CCGAACAACACAGCGTCCTTTCCTTGTAAATTAGAGTACTGTTTTCACCT
TTCCCTCATCCCTCGGACTTCACCATTTGATCTCATGTTGCCGAGATCTT
CTTTCGTTTGATCTTCAAGGGCCCTGATATCTTCAATCGTCATACTATGC
CATTTGTCGATCCAGCAAAACATCTGGcggttgaaattgaaaagtaaCCT
ACGGACAGTCTTGACAATTACACTTTCAACTTTTCCTTGCAAACCAAACC
ATTGAAATTCGATATGATATAATTTGTAGCATGTCATCACTGGGTCCTGC
GTTTGTTCCCATCCAGAGCCTTGAATCGGGCCACGTCCAGTTTTCTCTGA
TTTGAATTTGGTTGGATCTTCTTCCTCCTTATCATCCACCTGACGACACG
GGTCGTTAACAATATCTATTTTTTCAACAACTCTTTTGTTTAATTGGTTT
GCTGGCAAATTATGAACATTATCGATGTCACCGGTCCCAGGTTCATGTCT
TGTTTCGATGACAATATGAAATCTATCTTTCATATAATGATTGCTGTATA
CTGTACGACAGTAAGGGTAAGCGTTCCACGATTGCTCGTGAATTTCCAAT
GAGCCAGTTGGAGCTAAGGAACGAATGAAAGTAGGGACTTTGGATGAGAG
ATGAAAGATCTTGTATGTGTATTGGCATTTCATAGTAGCTCCACTTCTTT
CACCAGGAATGACCTCTTCTCTTGGTTCATTAGTAACAACCTCGATGCCT
TCTCCACGCCCAGTTTCATTCTTACTAGCCTCAGCAACACCGTACAACTG
CCCAATGCGGTACTCTTCAACTGACATTGGTAAAGTAACACGATATTCTT
TTATAACACTGCTCACATGGTTTGGATCCATCTTGAAATTTCTCACTGCT
GTCAAATTGACAAGAGAACTGGTCCGAAGTTCTTGACTGCTCGTGACTGA
TTCGAAGTGAACCACAAAAATAATCGTtttaaatttgtaaacaaaNTTTG
GGACacttgattttaattgttctctttaatgacacgtggttcgcgcaatg
tttacatttcacTACTTTTA
Run BLAST on NCBI

protein sequence of TCONS_00003235-protein

>TCONS_00003235-protein ID=TCONS_00003235-protein|Name=TCONS_00003235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MDPNHVSSVIKEYRVTLPMSVEEYRIGQLYGVAEASKNETGRGEGIEVVT
NEPREEVIPGERSGATMKCQYTYKIFHLSSKVPTFIRSLAPTGSLEIHEQ
SWNAYPYCRTVYSNHYMKDRFHIVIETRHEPGTGDIDNVHNLPANQLNKR
VVEKIDIVNDPCRQVDDKEEEDPTKFKSEKTGRGPIQGSGWEQTQDPVMT
CYKLYHIEFQWFGLQGKVESVIVKTVRRLLFNFNRQMFCWIDKWHSMTIE
DIRALEDQTKEDLGNMRSNGEVRGMRER
Run BLAST on NCBI

transcript from alignment at sc0000025:654614..655983

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003235 ID=TCONS_00003235|Name=TCONS_00003235|organism=Clytia hemisphaerica|type=transcript|length=1370bp|location=Sequence derived from alignment at sc0000025:654614..655983 (Clytia hemisphaerica)
TAAAAGTAgtgaaatgtaaacattgcgcgaaccacgtgtcattaaagaga
acaattaaaatcaagtGTCCCAAANtttgtttacaaatttaaaACGATTA
TTTTTGTGGTTCACTTCGAATCAGTCACGAGCAGTCAAGAACTTCGGACC
AGTTCTCTTGTCAATTTGACAGCAGTGAGAAATTTCAAGATGGATCCAAA
CCATGTGAGCAGTGTTATAAAAGAATATCGTGTTACTTTACCAATGTCAG
TTGAAGAGTACCGCATTGGGCAGTTGTACGGTGTTGCTGAGGCTAGTAAG
AATGAAACTGGGCGTGGAGAAGGCATCGAGGTTGTTACTAATGAACCAAG
AGAAGAGGTCATTCCTGGTGAAAGAAGTGGAGCTACTATGAAATGCCAAT
ACACATACAAGATCTTTCATCTCTCATCCAAAGTCCCTACTTTCATTCGT
TCCTTAGCTCCAACTGGCTCATTGGAAATTCACGAGCAATCGTGGAACGC
TTACCCTTACTGTCGTACAGTATACAGCAATCATTATATGAAAGATAGAT
TTCATATTGTCATCGAAACAAGACATGAACCTGGGACCGGTGACATCGAT
AATGTTCATAATTTGCCAGCAAACCAATTAAACAAAAGAGTTGTTGAAAA
AATAGATATTGTTAACGACCCGTGTCGTCAGGTGGATGATAAGGAGGAAG
AAGATCCAACCAAATTCAAATCAGAGAAAACTGGACGTGGCCCGATTCAA
GGCTCTGGATGGGAACAAACGCAGGACCCAGTGATGACATGCTACAAATT
ATATCATATCGAATTTCAATGGTTTGGTTTGCAAGGAAAAGTTGAAAGTG
TAATTGTCAAGACTGTCCGTAGGttacttttcaatttcaaccgCCAGATG
TTTTGCTGGATCGACAAATGGCATAGTATGACGATTGAAGATATCAGGGC
CCTTGAAGATCAAACGAAAGAAGATCTCGGCAACATGAGATCAAATGGTG
AAGTCCGAGGGATGAGGGAAAGGTGAAAACAGTACTCTAATTTACAAGGA
AAGGACGCTGTGTTGTTCGGTTTAGAAAAAACAACTGttatttgtatttt
taattgatttatttatttgaacATTACCCACTTATATTATTCATTAATTA
CATTAATTTGTGTTACTGTATCCTCATGTGATTCTCTGCACAATTGAGAA
TGCTCAATACTTTTTAGGTAGAGCGTGTTACATTAATGAGAAACAGAGTA
TTTCTTTATCAATACATAATTTCTCATGCTCttcaaaatcattaaaatta
tttggataaaaataaacaaaatattaaaacaaaatatatGAACCGAAGAT
TTTCATAACACGTGTTTGTT

Coding sequence (CDS) from alignment at sc0000025:654614..655983

>TCONS_00003235 ID=TCONS_00003235|Name=TCONS_00003235|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at sc0000025:654614..655983 (Clytia hemisphaerica)
ATGGATCCAAACCATGTGAGCAGTGTTATAAAAGAATATCGTGTTACTTT
ACCAATGTCAGTTGAAGAGTACCGCATTGGGCAGTTGTACGGTGTTGCTG
AGGCTAGTAAGAATGAAACTGGGCGTGGAGAAGGCATCGAGGTTGTTACT
AATGAACCAAGAGAAGAGGTCATTCCTGGTGAAAGAAGTGGAGCTACTAT
GAAATGCCAATACACATACAAGATCTTTCATCTCTCATCCAAAGTCCCTA
CTTTCATTCGTTCCTTAGCTCCAACTGGCTCATTGGAAATTCACGAGCAA
TCGTGGAACGCTTACCCTTACTGTCGTACAGTATACAGCAATCATTATAT
GAAAGATAGATTTCATATTGTCATCGAAACAAGACATGAACCTGGGACCG
GTGACATCGATAATGTTCATAATTTGCCAGCAAACCAATTAAACAAAAGA
GTTGTTGAAAAAATAGATATTGTTAACGACCCGTGTCGTCAGGTGGATGA
TAAGGAGGAAGAAGATCCAACCAAATTCAAATCAGAGAAAACTGGACGTG
GCCCGATTCAAGGCTCTGGATGGGAACAAACGCAGGACCCAGTGATGACA
TGCTACAAATTATATCATATCGAATTTCAATGGTTTGGTTTGCAAGGAAA
AGTTGAAAGTGTAATTGTCAAGACTGTCCGTAGGttacttttcaatttca
accgCCAGATGTTTTGCTGGATCGACAAATGGCATAGTATGACGATTGAA
GATATCAGGGCCCTTGAAGATCAAACGAAAGAAGATCTCGGCAACATGAG
ATCAAATGGTGAAGTCCGAGGGATGAGGGAAAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001795XLOC_001795Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003235-proteinTCONS_00003235-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003235-exon-sc0000025-1491911889:654614..655983TCONS_00003235-exon-sc0000025-1491911889:654614..655983Clytia hemisphaericaexon
TCONS_00003235-exon-sc0000025-1510915933:654614..655983TCONS_00003235-exon-sc0000025-1510915933:654614..655983Clytia hemisphaericaexon
TCONS_00003235-exon-sc0000025-1575043694:654614..655983TCONS_00003235-exon-sc0000025-1575043694:654614..655983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:654614..655983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25346	1.10255	0.622933	0.440645	5.31597	5.01519	4.72271	4.4136	0.412084	0.734725	0.681884	0.325692	4.31443	2.195	0.312688	0.707741	1.76636	1.66939	13.1361	15.1264	4.07957	2.89749	0.210223	0.541769	0.328087	0.146405	0.167778	0	0.135858	0.141009
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001666PI_transfer
IPR023393START-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
Blast
[Close]
BLAST of TCONS_00003235 vs. Swiss-Prot (Human)
Match: PIPNA (Phosphatidylinositol transfer protein alpha isoform OS=Homo sapiens GN=PITPNA PE=1 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 2.101e-92
Identity = 148/273 (54.21%), Postives = 185/273 (67.77%), Query Frame = -1 
Query:  357 VIKEYRVTLPMSVEEYRIGQLYGVAEASKNETGRGEGIEVVTNEPREEVIPGERSGATMKCQYTYKIFHLSSKVPTFIRSLAPTGSLEIHEQSWNAYPYCRTVYSNHYMKDRFHIVIETRHEPGTGDIDNVHNLPANQLNKRVVEKIDIVN-DPCRQVDDKEEEDPTKFKSEKTGRGPIQGSGWE-----QTQDPVMTCYKLYHIEFQWFGLQGKVESVIVKTVRRLLFNFNRQMFCWIDKWHSMTIEDIRALEDQTKEDLGNMRSNGEVRGM 1157
            ++KEYRV LP+SV+EY++GQLY VAEASKNETG GEG+EV+ NEP E+   GE      K QYT+KI+HL SKVPTF+R LAP G+L IHE++WNAYPYCRTV +N YMK+ F I IET H+P  G  +NVH L            IDI +       D K EEDP KFKS KTGRGP+ G  W+     Q   P M  YKL  ++F+W+GLQ KVE+ I K  RRL  NF+RQ+FCW+DKW  +T++DIR +E++TK  L  MR    V+GM
Sbjct:    3 LLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEK--DGE------KGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPL-GPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPVKGM 266
The following BLAST results are available for this feature:
BLAST of TCONS_00003235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIPNA2.101e-9254.21Phosphatidylinositol transfer protein alpha isofor... [more]
back to top